RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, human

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC3-210	ENST00000490808	SRPK2	P78362	688 aa	Known RBP	13.84	□□□□□ -0.19
HDAC3-210	ENST00000490808	PSME1	Q06323	249 aa		13.84	□□□□□ -0.19
HDAC3-210	ENST00000490808	NUDT16	Q96DE0	195 aa	Known RBP	13.84	□□□□□ -0.19
HDAC3-210	ENST00000490808	SOS2	Q07890	1332 aa	Predicted RBP	13.84	□□□□□ -0.19
HDAC3-210	ENST00000490808	NPC1L1	Q9UHC9	1359 aa		13.83	□□□□□ -0.19
HDAC3-210	ENST00000490808	NLRP13	Q86W25	1043 aa		13.83	□□□□□ -0.2
HDAC3-210	ENST00000490808	ORAI2	Q96SN7	254 aa		13.82	□□□□□ -0.2
HDAC3-210	ENST00000490808	SBNO1	A3KN83	1393 aa		13.82	□□□□□ -0.2
HDAC3-210	ENST00000490808	POLR3A	O14802	1390 aa	Predicted RBP	13.82	□□□□□ -0.2
HDAC3-210	ENST00000490808	PARD3	Q8TEW0	1356 aa		13.82	□□□□□ -0.2
HDAC3-210	ENST00000490808	ZNF692	Q9BU19	519 aa	Predicted RBP	13.81	□□□□□ -0.2
HDAC3-210	ENST00000490808	AFF2	P51816	1311 aa		13.81	□□□□□ -0.2
HDAC3-210	ENST00000490808	MYOM1	P52179	1685 aa		13.8	□□□□□ -0.2
HDAC3-210	ENST00000490808	FAM9B	Q8IZU0	186 aa		13.8	□□□□□ -0.2
HDAC3-210	ENST00000490808	PRR36	Q9H6K5	1346 aa		13.8	□□□□□ -0.2
HDAC3-210	ENST00000490808	PPIP5K1	Q6PFW1	1433 aa		13.8	□□□□□ -0.2
HDAC3-210	ENST00000490808	PXDN	Q92626	1479 aa		13.8	□□□□□ -0.2
HDAC3-210	ENST00000490808	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
HDAC3-210	ENST00000490808	CNGB1	Q14028	1251 aa	Predicted RBP	13.79	□□□□□ -0.2
HDAC3-210	ENST00000490808	NGDN	Q8NEJ9	315 aa	Known RBP	13.79	□□□□□ -0.2
HDAC3-210	ENST00000490808	ARHGEF10	O15013	1369 aa		13.79	□□□□□ -0.2
HDAC3-210	ENST00000490808	RGS12	O14924	1447 aa		13.79	□□□□□ -0.2
HDAC3-210	ENST00000490808	NUTM2F	A1L443	756 aa		13.78	□□□□□ -0.2
HDAC3-210	ENST00000490808	FOXO3	O43524	673 aa		13.78	□□□□□ -0.2
HDAC3-210	ENST00000490808	CABP2	Q9NPB3	220 aa		13.78	□□□□□ -0.2
HDAC3-210	ENST00000490808	RBM6	P78332	1123 aa	Known RBP	13.77	□□□□□ -0.21
HDAC3-210	ENST00000490808	AKAP12	Q02952	1782 aa		13.77	□□□□□ -0.21
HDAC3-210	ENST00000490808	CC2D1B	Q5T0F9	858 aa	Known RBP	13.77	□□□□□ -0.21
HDAC3-210	ENST00000490808	KRT28	Q7Z3Y7	464 aa		13.77	□□□□□ -0.21
HDAC3-210	ENST00000490808	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.77	□□□□□ -0.21
HDAC3-210	ENST00000490808	TNS3	Q68CZ2	1445 aa		13.76	□□□□□ -0.21
HDAC3-210	ENST00000490808	QTRT2	Q9H974	415 aa	Known RBP	13.76	□□□□□ -0.21
HDAC3-210	ENST00000490808	TERF2IP	Q9NYB0	399 aa		13.76	□□□□□ -0.21
HDAC3-210	ENST00000490808	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.76	□□□□□ -0.21
HDAC3-210	ENST00000490808	ACE	P12821	1306 aa		13.75	□□□□□ -0.21
HDAC3-210	ENST00000490808	SPATA31A3	Q5VYP0	1347 aa		13.75	□□□□□ -0.21
HDAC3-210	ENST00000490808	C8orf37	Q96NL8	207 aa		13.75	□□□□□ -0.21
HDAC3-210	ENST00000490808	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.74	□□□□□ -0.21
HDAC3-210	ENST00000490808	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.74	□□□□□ -0.21
HDAC3-210	ENST00000490808	PMFBP1	Q8TBY8	1022 aa		13.74	□□□□□ -0.21
HDAC3-210	ENST00000490808	CABP1	Q9NZU7	370 aa		13.74	□□□□□ -0.21
HDAC3-210	ENST00000490808	ZRANB1	Q9UGI0	708 aa		13.74	□□□□□ -0.21
HDAC3-210	ENST00000490808	CPSF1	Q10570	1443 aa	Known RBP	13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	MON2	Q7Z3U7	1717 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	NSD2	O96028	1365 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	INSR	P06213	1382 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	PNPLA6	Q8IY17	1366 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	ANKRD36B	Q8N2N9	1353 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	ALS2	Q96Q42	1657 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	CGNL1	Q0VF96	1302 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	TTC21A	Q8NDW8	1320 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	PNISR	Q8TF01	805 aa	Known RBP	13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	USP6	P35125	1406 aa		13.73	□□□□□ -0.21
HDAC3-210	ENST00000490808	CCDC184	Q52MB2	194 aa		13.72	□□□□□ -0.21
HDAC3-210	ENST00000490808	GTF3C3	Q9Y5Q9	886 aa		13.72	□□□□□ -0.21
HDAC3-210	ENST00000490808	ZBED9	Q6R2W3	1325 aa		13.71	□□□□□ -0.21
HDAC3-210	ENST00000490808	NGLY1	Q96IV0	654 aa		13.71	□□□□□ -0.21
HDAC3-210	ENST00000490808	SLC12A5	Q9H2X9	1139 aa		13.71	□□□□□ -0.21
HDAC3-210	ENST00000490808	SRCAP	Q6ZRS2	3230 aa		13.7	□□□□□ -0.22
HDAC3-210	ENST00000490808	EDC4	Q6P2E9	1401 aa	Known RBP	13.7	□□□□□ -0.22
HDAC3-210	ENST00000490808	PPP2R1A	P30153	589 aa		13.69	□□□□□ -0.22
HDAC3-210	ENST00000490808	WDR43	Q15061	677 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
HDAC3-210	ENST00000490808	DDX17	Q92841	729 aa	Known RBP	13.69	□□□□□ -0.22
HDAC3-210	ENST00000490808	SSH2	Q76I76	1423 aa		13.69	□□□□□ -0.22
HDAC3-210	ENST00000490808	NSD3	Q9BZ95	1437 aa		13.69	□□□□□ -0.22
HDAC3-210	ENST00000490808	MARF1	Q9Y4F3	1742 aa	Known RBP	13.69	□□□□□ -0.22
HDAC3-210	ENST00000490808	NRK	Q7Z2Y5	1582 aa		13.68	□□□□□ -0.22
HDAC3-210	ENST00000490808	MORC1	Q86VD1	984 aa		13.68	□□□□□ -0.22
HDAC3-210	ENST00000490808	USP54	Q70EL1	1684 aa		13.68	□□□□□ -0.22
HDAC3-210	ENST00000490808	ADAMTS2	O95450	1211 aa		13.67	□□□□□ -0.22
HDAC3-210	ENST00000490808	NEFL	P07196	543 aa		13.67	□□□□□ -0.22
HDAC3-210	ENST00000490808	CARD14	Q9BXL6	1004 aa		13.67	□□□□□ -0.22
HDAC3-210	ENST00000490808	CD163L1	Q9NR16	1453 aa		13.67	□□□□□ -0.22
HDAC3-210	ENST00000490808	PAK3	O75914	559 aa	Predicted RBP	13.66	□□□□□ -0.22
HDAC3-210	ENST00000490808	ABTB2	Q8N961	1025 aa		13.66	□□□□□ -0.22
HDAC3-210	ENST00000490808	CFAP53	Q96M91	514 aa		13.66	□□□□□ -0.22
HDAC3-210	ENST00000490808		A0A1W2PP64	1363 aa		13.66	□□□□□ -0.22
HDAC3-210	ENST00000490808	ABCA3	Q99758	1704 aa		13.65	□□□□□ -0.22
HDAC3-210	ENST00000490808	XPC	Q01831	940 aa	Predicted RBP	13.65	□□□□□ -0.22
HDAC3-210	ENST00000490808	TTC21B	Q7Z4L5	1316 aa		13.64	□□□□□ -0.23
HDAC3-210	ENST00000490808	USP31	Q70CQ4	1352 aa		13.64	□□□□□ -0.23
HDAC3-210	ENST00000490808	USP21	Q9UK80	565 aa		13.64	□□□□□ -0.23
HDAC3-210	ENST00000490808	CRYBG1	Q9Y4K1	1723 aa		13.64	□□□□□ -0.23
HDAC3-210	ENST00000490808	USP19	O94966	1318 aa		13.64	□□□□□ -0.23
HDAC3-210	ENST00000490808	HAP1	P54257	671 aa	Predicted RBP	13.63	□□□□□ -0.23
HDAC3-210	ENST00000490808	PDE3B	Q13370	1112 aa		13.63	□□□□□ -0.23
HDAC3-210	ENST00000490808	LMOD2	Q6P5Q4	547 aa		13.63	□□□□□ -0.23
HDAC3-210	ENST00000490808	NGEF	Q8N5V2	710 aa		13.63	□□□□□ -0.23
HDAC3-210	ENST00000490808	KCNH5	Q8NCM2	988 aa		13.63	□□□□□ -0.23
HDAC3-210	ENST00000490808	TRPC5	Q9UL62	973 aa	Predicted RBP	13.63	□□□□□ -0.23
HDAC3-210	ENST00000490808	PIK3C2A	O00443	1686 aa		13.63	□□□□□ -0.23
HDAC3-210	ENST00000490808	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.62	□□□□□ -0.23
HDAC3-210	ENST00000490808	CCDC125	Q86Z20	511 aa		13.62	□□□□□ -0.23
HDAC3-210	ENST00000490808	NWD2	Q9ULI1	1742 aa		13.61	□□□□□ -0.23
HDAC3-210	ENST00000490808	SLIT3	O75094	1523 aa		13.61	□□□□□ -0.23
HDAC3-210	ENST00000490808	ABCC6	O95255	1503 aa		13.61	□□□□□ -0.23
HDAC3-210	ENST00000490808	NLRP6	P59044	892 aa		13.61	□□□□□ -0.23
HDAC3-210	ENST00000490808	KIF20B	Q96Q89	1820 aa		13.61	□□□□□ -0.23
HDAC3-210	ENST00000490808	CPD	O75976	1380 aa		13.6	□□□□□ -0.23
HDAC3-210	ENST00000490808	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms