RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 CARD14Q9BXL6 1004 aa15.76■□□□□ 0.11
TRIM40-208ENST00000489892 ATF3P18847 181 aa15.75■□□□□ 0.11
TRIM40-208ENST00000489892 CC2D1BQ5T0F9 858 aaKnown RBP15.75■□□□□ 0.11
TRIM40-208ENST00000489892 CD163L1Q9NR16 1453 aa15.75■□□□□ 0.11
TRIM40-208ENST00000489892 CADPS2Q86UW7 1296 aa15.74■□□□□ 0.11
TRIM40-208ENST00000489892 PRR36Q9H6K5 1346 aa15.73■□□□□ 0.11
TRIM40-208ENST00000489892 MRS2Q9HD23 443 aa15.73■□□□□ 0.11
TRIM40-208ENST00000489892 AKAP12Q02952 1782 aa15.72■□□□□ 0.11
TRIM40-208ENST00000489892 MON2Q7Z3U7 1717 aa15.72■□□□□ 0.11
TRIM40-208ENST00000489892 MEX3CQ5U5Q3 659 aaKnown RBP15.72■□□□□ 0.11
TRIM40-208ENST00000489892 POLR3AO14802 1390 aaPredicted RBP15.72■□□□□ 0.11
TRIM40-208ENST00000489892 MORC1Q86VD1 984 aa15.71■□□□□ 0.11
TRIM40-208ENST00000489892 AHDC1Q5TGY3 1603 aaPredicted RBP15.71■□□□□ 0.11
TRIM40-208ENST00000489892 SHPRHQ149N8 1683 aa15.7■□□□□ 0.1
TRIM40-208ENST00000489892 NGDNQ8NEJ9 315 aaKnown RBP15.7■□□□□ 0.1
TRIM40-208ENST00000489892 ACEP12821 1306 aa15.69■□□□□ 0.1
TRIM40-208ENST00000489892 SPATA31A6Q5VVP1 1343 aa15.69■□□□□ 0.1
TRIM40-208ENST00000489892 TTC21AQ8NDW8 1320 aa15.69■□□□□ 0.1
TRIM40-208ENST00000489892 ANKRD26Q9UPS8 1709 aa15.69■□□□□ 0.1
TRIM40-208ENST00000489892 KIF20BQ96Q89 1820 aa15.69■□□□□ 0.1
TRIM40-208ENST00000489892 IFFO2Q5TF58 517 aa15.69■□□□□ 0.1
TRIM40-208ENST00000489892 USP6P35125 1406 aa15.68■□□□□ 0.1
TRIM40-208ENST00000489892 KIF1AQ12756 1690 aa15.68■□□□□ 0.1
TRIM40-208ENST00000489892 CNGB1Q14028 1251 aaPredicted RBP15.68■□□□□ 0.1
TRIM40-208ENST00000489892 PHF8Q9UPP1 1060 aa15.67■□□□□ 0.1
TRIM40-208ENST00000489892 LRP6O75581 1613 aa15.67■□□□□ 0.1
TRIM40-208ENST00000489892 NUTM2FA1L443 756 aa15.66■□□□□ 0.1
TRIM40-208ENST00000489892 PPP2R1AP30153 589 aa15.66■□□□□ 0.1
TRIM40-208ENST00000489892 FYB1O15117 783 aa15.65■□□□□ 0.1
TRIM40-208ENST00000489892 ZNF772Q68DY9 489 aaPredicted RBP15.65■□□□□ 0.1
TRIM40-208ENST00000489892 NRKQ7Z2Y5 1582 aa15.65■□□□□ 0.1
TRIM40-208ENST00000489892 ESCO1Q5FWF5 840 aa15.64■□□□□ 0.09
TRIM40-208ENST00000489892 COG3Q96JB2 828 aa15.64■□□□□ 0.09
TRIM40-208ENST00000489892 CFAP53Q96M91 514 aa15.64■□□□□ 0.09
TRIM40-208ENST00000489892 RGPD8O14715 1765 aaPredicted RBP15.64■□□□□ 0.09
TRIM40-208ENST00000489892 C1orf167Q5SNV9 1468 aa15.64■□□□□ 0.09
TRIM40-208ENST00000489892 TTC21BQ7Z4L5 1316 aa15.64■□□□□ 0.09
TRIM40-208ENST00000489892 INSRP06213 1382 aa15.63■□□□□ 0.09
TRIM40-208ENST00000489892 BRINP3Q76B58 766 aa15.63■□□□□ 0.09
TRIM40-208ENST00000489892 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.63■□□□□ 0.09
TRIM40-208ENST00000489892 MST1RQ04912 1400 aa15.62■□□□□ 0.09
TRIM40-208ENST00000489892 SSH2Q76I76 1423 aa15.62■□□□□ 0.09
TRIM40-208ENST00000489892 PMFBP1Q8TBY8 1022 aa15.62■□□□□ 0.09
TRIM40-208ENST00000489892 ZRANB1Q9UGI0 708 aa15.62■□□□□ 0.09
TRIM40-208ENST00000489892 CDK12Q9NYV4 1490 aaPredicted RBP15.62■□□□□ 0.09
TRIM40-208ENST00000489892 NUTM2BA6NNL0 878 aaPredicted RBP15.61■□□□□ 0.09
TRIM40-208ENST00000489892 NUTM2EB1AL46 878 aaPredicted RBP15.61■□□□□ 0.09
TRIM40-208ENST00000489892 NUTM2AQ8IVF1 878 aaPredicted RBP15.61■□□□□ 0.09
TRIM40-208ENST00000489892 GGNBP2Q9H3C7 697 aa15.61■□□□□ 0.09
TRIM40-208ENST00000489892 NHSL1Q5SYE7 1610 aa15.61■□□□□ 0.09
TRIM40-208ENST00000489892 PSME1Q06323 249 aa15.6■□□□□ 0.09
TRIM40-208ENST00000489892 AATKQ6ZMQ8 1374 aa15.6■□□□□ 0.09
TRIM40-208ENST00000489892 USP31Q70CQ4 1352 aa15.6■□□□□ 0.09
TRIM40-208ENST00000489892 RXRBP28702 533 aa15.59■□□□□ 0.09
TRIM40-208ENST00000489892 WDR43Q15061 677 aaKnown RBP eCLIP15.59■□□□□ 0.09
TRIM40-208ENST00000489892 PNISRQ8TF01 805 aaKnown RBP15.59■□□□□ 0.09
TRIM40-208ENST00000489892 NME9Q86XW9 330 aa15.58■□□□□ 0.08
TRIM40-208ENST00000489892 NPHP3Q7Z494 1330 aa15.58■□□□□ 0.08
TRIM40-208ENST00000489892 FAM9BQ8IZU0 186 aa15.57■□□□□ 0.08
TRIM40-208ENST00000489892 OVOS2A0A0J9YW53 1432 aa15.57■□□□□ 0.08
TRIM40-208ENST00000489892 OVOS2Q6IE36 1432 aa15.57■□□□□ 0.08
TRIM40-208ENST00000489892 USP54Q70EL1 1684 aa15.56■□□□□ 0.08
TRIM40-208ENST00000489892 TNNT2P45379 298 aaPredicted RBP15.55■□□□□ 0.08
TRIM40-208ENST00000489892 MTHFSP49914 203 aa15.55■□□□□ 0.08
TRIM40-208ENST00000489892 CCDC184Q52MB2 194 aa15.55■□□□□ 0.08
TRIM40-208ENST00000489892 LRRC59Q96AG4 307 aaKnown RBP15.55■□□□□ 0.08
TRIM40-208ENST00000489892 NUDCQ9Y266 331 aa15.55■□□□□ 0.08
TRIM40-208ENST00000489892 SMG6Q86US8 1419 aaKnown RBP15.54■□□□□ 0.08
TRIM40-208ENST00000489892 AFF2P51816 1311 aa15.54■□□□□ 0.08
TRIM40-208ENST00000489892 ABTB2Q8N961 1025 aa15.54■□□□□ 0.08
TRIM40-208ENST00000489892 ORAI2Q96SN7 254 aa15.54■□□□□ 0.08
TRIM40-208ENST00000489892 SBNO1A3KN83 1393 aa15.53■□□□□ 0.08
TRIM40-208ENST00000489892 KIF24Q5T7B8 1368 aa15.53■□□□□ 0.08
TRIM40-208ENST00000489892 PAK3O75914 559 aaPredicted RBP15.53■□□□□ 0.08
TRIM40-208ENST00000489892 PIK3C2AO00443 1686 aa15.52■□□□□ 0.08
TRIM40-208ENST00000489892 FOXO3O43524 673 aa15.52■□□□□ 0.08
TRIM40-208ENST00000489892 NLRP6P59044 892 aa15.52■□□□□ 0.08
TRIM40-208ENST00000489892 C8orf37Q96NL8 207 aa15.52■□□□□ 0.08
TRIM40-208ENST00000489892 RGS12O14924 1447 aa15.51■□□□□ 0.07
TRIM40-208ENST00000489892 KRT28Q7Z3Y7 464 aa15.51■□□□□ 0.07
TRIM40-208ENST00000489892 KCNH5Q8NCM2 988 aa15.51■□□□□ 0.07
TRIM40-208ENST00000489892 DDX17Q92841 729 aaKnown RBP15.51■□□□□ 0.07
TRIM40-208ENST00000489892 ARHGEF10O15013 1369 aa15.5■□□□□ 0.07
TRIM40-208ENST00000489892 PNPLA6Q8IY17 1366 aa15.5■□□□□ 0.07
TRIM40-208ENST00000489892 HNRNPUQ00839 825 aaKnown RBP eCLIP15.5■□□□□ 0.07
TRIM40-208ENST00000489892 NGEFQ8N5V2 710 aa15.5■□□□□ 0.07
TRIM40-208ENST00000489892 PNNQ9H307 717 aaKnown RBP15.5■□□□□ 0.07
TRIM40-208ENST00000489892 SUPT16HQ9Y5B9 1047 aaKnown RBP15.5■□□□□ 0.07
TRIM40-208ENST00000489892 TRPM3Q9HCF6 1732 aaPredicted RBP15.48■□□□□ 0.07
TRIM40-208ENST00000489892 POLKQ9UBT6 870 aa15.48■□□□□ 0.07
TRIM40-208ENST00000489892 BLMP54132 1417 aaPredicted RBP15.48■□□□□ 0.07
TRIM40-208ENST00000489892 MAP2P11137 1827 aaKnown RBP15.47■□□□□ 0.07
TRIM40-208ENST00000489892 ZBED9Q6R2W3 1325 aa15.47■□□□□ 0.07
TRIM40-208ENST00000489892 LRP5O75197 1615 aa15.47■□□□□ 0.07
TRIM40-208ENST00000489892 DIAPH1O60610 1272 aaKnown RBP15.47■□□□□ 0.07
TRIM40-208ENST00000489892 RTL1A6NKG5 1358 aa15.47■□□□□ 0.07
TRIM40-208ENST00000489892 TNS3Q68CZ2 1445 aa15.46■□□□□ 0.07
TRIM40-208ENST00000489892 ADAMTS2O95450 1211 aa15.46■□□□□ 0.07
TRIM40-208ENST00000489892 RBM6P78332 1123 aaKnown RBP15.46■□□□□ 0.07
TRIM40-208ENST00000489892 NGLY1Q96IV0 654 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms