RNA–Protein interactions for RNA: ENST00000489443.2

LMX1A-204, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

TSL 1 (best)

Gene LMX1A, Length 1,255 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-204ENST00000489443 TESK2Q96S53 571 aa22.16■■□□□ 1.14
LMX1A-204ENST00000489443 MARF1Q9Y4F3 1742 aaKnown RBP22.15■■□□□ 1.14
LMX1A-204ENST00000489443 NUTM2GQ5VZR2 741 aa22.14■■□□□ 1.13
LMX1A-204ENST00000489443 TMC1Q8TDI8 760 aa22.13■■□□□ 1.13
LMX1A-204ENST00000489443 SLC24A1O60721 1099 aa22.12■■□□□ 1.13
LMX1A-204ENST00000489443 ABTB2Q8N961 1025 aa22.12■■□□□ 1.13
LMX1A-204ENST00000489443 USP21Q9UK80 565 aa22.12■■□□□ 1.13
LMX1A-204ENST00000489443 QTRT2Q9H974 415 aaKnown RBP22.11■■□□□ 1.13
LMX1A-204ENST00000489443 ABCA3Q99758 1704 aa22.11■■□□□ 1.13
LMX1A-204ENST00000489443 FNBP4Q8N3X1 1017 aaPredicted RBP22.1■■□□□ 1.13
LMX1A-204ENST00000489443 ZNF692Q9BU19 519 aaPredicted RBP22.1■■□□□ 1.13
LMX1A-204ENST00000489443 USP6P35125 1406 aa22.09■■□□□ 1.13
LMX1A-204ENST00000489443 TMF1P82094 1093 aa22.08■■□□□ 1.13
LMX1A-204ENST00000489443 PUS7Q96PZ0 661 aaKnown RBP22.08■■□□□ 1.13
LMX1A-204ENST00000489443 SLC12A5Q9H2X9 1139 aa22.08■■□□□ 1.13
LMX1A-204ENST00000489443 BRD4O60885 1362 aaPredicted RBP22.08■■□□□ 1.12
LMX1A-204ENST00000489443 RXRBP28702 533 aa22.07■■□□□ 1.12
LMX1A-204ENST00000489443 AKAP12Q02952 1782 aa22.07■■□□□ 1.12
LMX1A-204ENST00000489443 KTN1Q86UP2 1357 aaKnown RBP22.06■■□□□ 1.12
LMX1A-204ENST00000489443 FAM83GA6ND36 823 aa22.05■■□□□ 1.12
LMX1A-204ENST00000489443 SOCS7O14512 581 aa22.05■■□□□ 1.12
LMX1A-204ENST00000489443 CPSF1Q10570 1443 aaKnown RBP22.05■■□□□ 1.12
LMX1A-204ENST00000489443 BCL9LQ86UU0 1499 aa22.04■■□□□ 1.12
LMX1A-204ENST00000489443 CRYBG1Q9Y4K1 1723 aa22.04■■□□□ 1.12
LMX1A-204ENST00000489443 HDGFL2Q7Z4V5 671 aaPredicted RBP22.04■■□□□ 1.12
LMX1A-204ENST00000489443 NLRP13Q86W25 1043 aa22.04■■□□□ 1.12
LMX1A-204ENST00000489443 TRPC5Q9UL62 973 aaPredicted RBP22.04■■□□□ 1.12
LMX1A-204ENST00000489443 TTC21BQ7Z4L5 1316 aa22.04■■□□□ 1.12
LMX1A-204ENST00000489443 NLRP6P59044 892 aa22.03■■□□□ 1.12
LMX1A-204ENST00000489443 SSH2Q76I76 1423 aa22.03■■□□□ 1.12
LMX1A-204ENST00000489443 ZC3H6P61129 1189 aaKnown RBP22.02■■□□□ 1.12
LMX1A-204ENST00000489443 RBM6P78332 1123 aaKnown RBP22.02■■□□□ 1.12
LMX1A-204ENST00000489443 EIF4G2P78344 907 aaKnown RBP eCLIP22.02■■□□□ 1.12
LMX1A-204ENST00000489443 UNC5CLQ8IV45 518 aa22.02■■□□□ 1.12
LMX1A-204ENST00000489443 TERF2IPQ9NYB0 399 aa22.02■■□□□ 1.12
LMX1A-204ENST00000489443 SLIT2O94813 1529 aa22.01■■□□□ 1.11
LMX1A-204ENST00000489443 PHRF1Q9P1Y6 1649 aaKnown RBP22.01■■□□□ 1.11
LMX1A-204ENST00000489443 HSPA5P11021 654 aaKnown RBP22■■□□□ 1.11
LMX1A-204ENST00000489443 CDCA8Q53HL2 280 aa22■■□□□ 1.11
LMX1A-204ENST00000489443 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22■■□□□ 1.11
LMX1A-204ENST00000489443 PRDM11Q9NQV5 511 aa22■■□□□ 1.11
LMX1A-204ENST00000489443 CD163L1Q9NR16 1453 aa22■■□□□ 1.11
LMX1A-204ENST00000489443 ATRNO75882 1429 aa21.99■■□□□ 1.11
LMX1A-204ENST00000489443 PLCH1Q4KWH8 1693 aa21.99■■□□□ 1.11
LMX1A-204ENST00000489443 MON2Q7Z3U7 1717 aa21.99■■□□□ 1.11
LMX1A-204ENST00000489443 USP19O94966 1318 aa21.99■■□□□ 1.11
LMX1A-204ENST00000489443 TTC21AQ8NDW8 1320 aa21.99■■□□□ 1.11
LMX1A-204ENST00000489443 KIAA0232Q92628 1395 aa21.99■■□□□ 1.11
LMX1A-204ENST00000489443 PIK3C2AO00443 1686 aa21.98■■□□□ 1.11
LMX1A-204ENST00000489443 CHRNA2Q15822 529 aa21.98■■□□□ 1.11
LMX1A-204ENST00000489443 BTG4Q9NY30 223 aa21.98■■□□□ 1.11
LMX1A-204ENST00000489443 NINLQ9Y2I6 1382 aa21.98■■□□□ 1.11
LMX1A-204ENST00000489443 COL14A1Q05707 1796 aaKnown RBP21.97■■□□□ 1.11
LMX1A-204ENST00000489443 GCP02774 474 aa21.97■■□□□ 1.11
LMX1A-204ENST00000489443 A0A1W2PP64 1363 aa21.97■■□□□ 1.11
LMX1A-204ENST00000489443 NWD2Q9ULI1 1742 aa21.97■■□□□ 1.11
LMX1A-204ENST00000489443 NRKQ7Z2Y5 1582 aa21.96■■□□□ 1.11
LMX1A-204ENST00000489443 CCDC9Q9Y3X0 531 aaKnown RBP21.96■■□□□ 1.11
LMX1A-204ENST00000489443 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.96■■□□□ 1.11
LMX1A-204ENST00000489443 GJD4Q96KN9 370 aaPredicted RBP21.95■■□□□ 1.1
LMX1A-204ENST00000489443 ZBTB7CA1YPR0 619 aa21.94■■□□□ 1.1
LMX1A-204ENST00000489443 POLR3GLQ9BT43 218 aa21.94■■□□□ 1.1
LMX1A-204ENST00000489443 ZRANB1Q9UGI0 708 aa21.94■■□□□ 1.1
LMX1A-204ENST00000489443 EDC4Q6P2E9 1401 aaKnown RBP21.94■■□□□ 1.1
LMX1A-204ENST00000489443 NME9Q86XW9 330 aa21.93■■□□□ 1.1
LMX1A-204ENST00000489443 CDK12Q9NYV4 1490 aaPredicted RBP21.93■■□□□ 1.1
LMX1A-204ENST00000489443 SOX12O15370 315 aa21.92■■□□□ 1.1
LMX1A-204ENST00000489443 VPS72Q15906 364 aa21.92■■□□□ 1.1
LMX1A-204ENST00000489443 RGS12O14924 1447 aa21.9■■□□□ 1.1
LMX1A-204ENST00000489443 CPDO75976 1380 aa21.9■■□□□ 1.1
LMX1A-204ENST00000489443 ANKRD36BQ8N2N9 1353 aa21.9■■□□□ 1.1
LMX1A-204ENST00000489443 SLIT3O75094 1523 aa21.9■■□□□ 1.1
LMX1A-204ENST00000489443 NRAPQ86VF7 1730 aa21.89■■□□□ 1.1
LMX1A-204ENST00000489443 KCNH5Q8NCM2 988 aa21.89■■□□□ 1.09
LMX1A-204ENST00000489443 STRN4Q9NRL3 753 aa21.89■■□□□ 1.09
LMX1A-204ENST00000489443 GLI3P10071 1580 aa21.87■■□□□ 1.09
LMX1A-204ENST00000489443 EVA1CP58658 441 aa21.87■■□□□ 1.09
LMX1A-204ENST00000489443 USP31Q70CQ4 1352 aa21.87■■□□□ 1.09
LMX1A-204ENST00000489443 MYOM1P52179 1685 aa21.85■■□□□ 1.09
LMX1A-204ENST00000489443 CAMTA1Q9Y6Y1 1673 aa21.85■■□□□ 1.09
LMX1A-204ENST00000489443 ARHGEF25Q86VW2 580 aa21.83■■□□□ 1.09
LMX1A-204ENST00000489443 SPATA31A5Q5VU36 1347 aa21.82■■□□□ 1.08
LMX1A-204ENST00000489443 SPATA31A7Q8IWB4 1347 aa21.82■■□□□ 1.08
LMX1A-204ENST00000489443 LMO7Q8WWI1 1683 aa21.82■■□□□ 1.08
LMX1A-204ENST00000489443 C11orf95C9JLR9 678 aaPredicted RBP21.82■■□□□ 1.08
LMX1A-204ENST00000489443 AATKQ6ZMQ8 1374 aa21.82■■□□□ 1.08
LMX1A-204ENST00000489443 USP54Q70EL1 1684 aa21.82■■□□□ 1.08
LMX1A-204ENST00000489443 NFAT5O94916 1531 aa21.81■■□□□ 1.08
LMX1A-204ENST00000489443 A0A0G2JS52 829 aa21.81■■□□□ 1.08
LMX1A-204ENST00000489443 MYT1Q01538 1121 aa21.81■■□□□ 1.08
LMX1A-204ENST00000489443 FAM98CQ17RN3 349 aaKnown RBP21.81■■□□□ 1.08
LMX1A-204ENST00000489443 COG3Q96JB2 828 aa21.81■■□□□ 1.08
LMX1A-204ENST00000489443 LARP1Q6PKG0 1096 aaKnown RBP21.8■■□□□ 1.08
LMX1A-204ENST00000489443 SEPT12Q8IYM1 358 aa21.8■■□□□ 1.08
LMX1A-204ENST00000489443 CARD14Q9BXL6 1004 aa21.8■■□□□ 1.08
LMX1A-204ENST00000489443 USP35Q9P2H5 1018 aa21.8■■□□□ 1.08
LMX1A-204ENST00000489443 FYB1O15117 783 aa21.79■■□□□ 1.08
LMX1A-204ENST00000489443 GGNBP2Q9H3C7 697 aa21.79■■□□□ 1.08
LMX1A-204ENST00000489443 AXIN2Q9Y2T1 843 aa21.79■■□□□ 1.08
LMX1A-204ENST00000489443 OVOS2A0A0J9YW53 1432 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms