RNA–Protein interactions for RNA: ENST00000488774.1

PTPRD-212, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 3

Gene PTPRD, Length 420 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-212ENST00000488774 CABP1Q9NZU7 370 aa9.29□□□□□ -0.92
PTPRD-212ENST00000488774 USP54Q70EL1 1684 aa9.29□□□□□ -0.92
PTPRD-212ENST00000488774 LTN1O94822 1766 aa9.28□□□□□ -0.92
PTPRD-212ENST00000488774 PLEKHG3A1L390 1219 aa9.28□□□□□ -0.92
PTPRD-212ENST00000488774 SRPK2P78362 688 aaKnown RBP9.28□□□□□ -0.92
PTPRD-212ENST00000488774 NUTM2GQ5VZR2 741 aa9.28□□□□□ -0.92
PTPRD-212ENST00000488774 LRRC59Q96AG4 307 aaKnown RBP9.28□□□□□ -0.92
PTPRD-212ENST00000488774 ZRANB1Q9UGI0 708 aa9.28□□□□□ -0.92
PTPRD-212ENST00000488774 CPSF1Q10570 1443 aaKnown RBP9.28□□□□□ -0.92
PTPRD-212ENST00000488774 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.28□□□□□ -0.92
PTPRD-212ENST00000488774 RGPD2P0DJD1 1756 aa9.27□□□□□ -0.92
PTPRD-212ENST00000488774 SBNO1A3KN83 1393 aa9.27□□□□□ -0.93
PTPRD-212ENST00000488774 KIF20BQ96Q89 1820 aa9.27□□□□□ -0.93
PTPRD-212ENST00000488774 ADAMTS2O95450 1211 aa9.27□□□□□ -0.93
PTPRD-212ENST00000488774 USP6P35125 1406 aa9.27□□□□□ -0.93
PTPRD-212ENST00000488774 LMO7Q8WWI1 1683 aa9.26□□□□□ -0.93
PTPRD-212ENST00000488774 NWD2Q9ULI1 1742 aa9.26□□□□□ -0.93
PTPRD-212ENST00000488774 GLI3P10071 1580 aa9.26□□□□□ -0.93
PTPRD-212ENST00000488774 HSPA5P11021 654 aaKnown RBP9.26□□□□□ -0.93
PTPRD-212ENST00000488774 SLC12A5Q9H2X9 1139 aa9.26□□□□□ -0.93
PTPRD-212ENST00000488774 CCDC61Q9Y6R9 512 aa9.26□□□□□ -0.93
PTPRD-212ENST00000488774 SPATA31A6Q5VVP1 1343 aa9.26□□□□□ -0.93
PTPRD-212ENST00000488774 EIF3AQ14152 1382 aaKnown RBP9.25□□□□□ -0.93
PTPRD-212ENST00000488774 PSME1Q06323 249 aa9.25□□□□□ -0.93
PTPRD-212ENST00000488774 NGDNQ8NEJ9 315 aaKnown RBP9.25□□□□□ -0.93
PTPRD-212ENST00000488774 TIMELESSQ9UNS1 1208 aa9.25□□□□□ -0.93
PTPRD-212ENST00000488774 BCL9LQ86UU0 1499 aa9.25□□□□□ -0.93
PTPRD-212ENST00000488774 EVC2Q86UK5 1308 aa9.25□□□□□ -0.93
PTPRD-212ENST00000488774 A0A1W2PP64 1363 aa9.24□□□□□ -0.93
PTPRD-212ENST00000488774 SLIT3O75094 1523 aa9.24□□□□□ -0.93
PTPRD-212ENST00000488774 NFAT5O94916 1531 aa9.24□□□□□ -0.93
PTPRD-212ENST00000488774 AFF2P51816 1311 aa9.24□□□□□ -0.93
PTPRD-212ENST00000488774 COL14A1Q05707 1796 aaKnown RBP9.24□□□□□ -0.93
PTPRD-212ENST00000488774 SLIT2O94813 1529 aa9.23□□□□□ -0.93
PTPRD-212ENST00000488774 LMOD2Q6P5Q4 547 aa9.23□□□□□ -0.93
PTPRD-212ENST00000488774 C8orf37Q96NL8 207 aa9.23□□□□□ -0.93
PTPRD-212ENST00000488774 WNK3Q9BYP7 1800 aa9.23□□□□□ -0.93
PTPRD-212ENST00000488774 PEAK1Q9H792 1746 aa9.22□□□□□ -0.93
PTPRD-212ENST00000488774 MAP2P11137 1827 aaKnown RBP9.22□□□□□ -0.93
PTPRD-212ENST00000488774 FAM83GA6ND36 823 aa9.22□□□□□ -0.93
PTPRD-212ENST00000488774 PAK3O75914 559 aaPredicted RBP9.22□□□□□ -0.93
PTPRD-212ENST00000488774 FBLN1P23142 703 aa9.22□□□□□ -0.93
PTPRD-212ENST00000488774 CAMTA1Q9Y6Y1 1673 aa9.22□□□□□ -0.93
PTPRD-212ENST00000488774 ANKRD26Q9UPS8 1709 aa9.22□□□□□ -0.93
PTPRD-212ENST00000488774 NME9Q86XW9 330 aa9.21□□□□□ -0.94
PTPRD-212ENST00000488774 CARD14Q9BXL6 1004 aa9.21□□□□□ -0.94
PTPRD-212ENST00000488774 USP19O94966 1318 aa9.21□□□□□ -0.94
PTPRD-212ENST00000488774 TTC21BQ7Z4L5 1316 aa9.21□□□□□ -0.94
PTPRD-212ENST00000488774 ATRNO75882 1429 aa9.21□□□□□ -0.94
PTPRD-212ENST00000488774 CHRNA2Q15822 529 aa9.2□□□□□ -0.94
PTPRD-212ENST00000488774 ATAD2Q6PL18 1390 aa9.2□□□□□ -0.94
PTPRD-212ENST00000488774 KTN1Q86UP2 1357 aaKnown RBP9.2□□□□□ -0.94
PTPRD-212ENST00000488774 MEX3CQ5U5Q3 659 aaKnown RBP9.19□□□□□ -0.94
PTPRD-212ENST00000488774 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.19□□□□□ -0.94
PTPRD-212ENST00000488774 FNBP4Q8N3X1 1017 aaPredicted RBP9.19□□□□□ -0.94
PTPRD-212ENST00000488774 TMC1Q8TDI8 760 aa9.19□□□□□ -0.94
PTPRD-212ENST00000488774 ARHGEF10O15013 1369 aa9.19□□□□□ -0.94
PTPRD-212ENST00000488774 KIAA0232Q92628 1395 aa9.19□□□□□ -0.94
PTPRD-212ENST00000488774 RGS12O14924 1447 aa9.19□□□□□ -0.94
PTPRD-212ENST00000488774 OVOS2A0A0J9YW53 1432 aa9.18□□□□□ -0.94
PTPRD-212ENST00000488774 ZC3H6P61129 1189 aaKnown RBP9.18□□□□□ -0.94
PTPRD-212ENST00000488774 OVOS2Q6IE36 1432 aa9.18□□□□□ -0.94
PTPRD-212ENST00000488774 ABTB2Q8N961 1025 aa9.18□□□□□ -0.94
PTPRD-212ENST00000488774 THSD7AQ9UPZ6 1657 aa9.17□□□□□ -0.94
PTPRD-212ENST00000488774 NGLY1Q96IV0 654 aa9.17□□□□□ -0.94
PTPRD-212ENST00000488774 AXIN2Q9Y2T1 843 aa9.17□□□□□ -0.94
PTPRD-212ENST00000488774 EDC4Q6P2E9 1401 aaKnown RBP9.16□□□□□ -0.94
PTPRD-212ENST00000488774 SOX12O15370 315 aa9.16□□□□□ -0.94
PTPRD-212ENST00000488774 EIF4G2P78344 907 aaKnown RBP eCLIP9.16□□□□□ -0.94
PTPRD-212ENST00000488774 QTRT2Q9H974 415 aaKnown RBP9.16□□□□□ -0.94
PTPRD-212ENST00000488774 USP21Q9UK80 565 aa9.16□□□□□ -0.94
PTPRD-212ENST00000488774 SHANK3Q9BYB0 1731 aa9.16□□□□□ -0.94
PTPRD-212ENST00000488774 ANKRD36BQ8N2N9 1353 aa9.15□□□□□ -0.94
PTPRD-212ENST00000488774 KIF7Q2M1P5 1343 aa9.15□□□□□ -0.94
PTPRD-212ENST00000488774 GCP02774 474 aa9.15□□□□□ -0.94
PTPRD-212ENST00000488774 NLRP6P59044 892 aa9.15□□□□□ -0.94
PTPRD-212ENST00000488774 TMF1P82094 1093 aa9.15□□□□□ -0.94
PTPRD-212ENST00000488774 PUS7Q96PZ0 661 aaKnown RBP9.15□□□□□ -0.94
PTPRD-212ENST00000488774 BTG4Q9NY30 223 aa9.15□□□□□ -0.94
PTPRD-212ENST00000488774 SBF2Q86WG5 1849 aa9.15□□□□□ -0.95
PTPRD-212ENST00000488774 NSD3Q9BZ95 1437 aa9.14□□□□□ -0.95
PTPRD-212ENST00000488774 USP31Q70CQ4 1352 aa9.14□□□□□ -0.95
PTPRD-212ENST00000488774 FAM208AQ9UK61 1670 aaKnown RBP9.14□□□□□ -0.95
PTPRD-212ENST00000488774 WASHC2AQ641Q2 1341 aa9.14□□□□□ -0.95
PTPRD-212ENST00000488774 COL5A2P05997 1499 aaPredicted RBP9.14□□□□□ -0.95
PTPRD-212ENST00000488774 CPDO75976 1380 aa9.13□□□□□ -0.95
PTPRD-212ENST00000488774 FYB1O15117 783 aa9.13□□□□□ -0.95
PTPRD-212ENST00000488774 UNC5CLQ8IV45 518 aa9.13□□□□□ -0.95
PTPRD-212ENST00000488774 POLR3GLQ9BT43 218 aa9.13□□□□□ -0.95
PTPRD-212ENST00000488774 GGNBP2Q9H3C7 697 aa9.13□□□□□ -0.95
PTPRD-212ENST00000488774 LRRC37A3O60309 1634 aa9.13□□□□□ -0.95
PTPRD-212ENST00000488774 BRD4O60885 1362 aaPredicted RBP9.12□□□□□ -0.95
PTPRD-212ENST00000488774 TTC21AQ8NDW8 1320 aa9.12□□□□□ -0.95
PTPRD-212ENST00000488774 PARP4Q9UKK3 1724 aaKnown RBP9.12□□□□□ -0.95
PTPRD-212ENST00000488774 ARHGEF25Q86VW2 580 aa9.12□□□□□ -0.95
PTPRD-212ENST00000488774 ZNF692Q9BU19 519 aaPredicted RBP9.12□□□□□ -0.95
PTPRD-212ENST00000488774 ZBTB7CA1YPR0 619 aa9.11□□□□□ -0.95
PTPRD-212ENST00000488774 ZNF772Q68DY9 489 aaPredicted RBP9.11□□□□□ -0.95
PTPRD-212ENST00000488774 LARP1Q6PKG0 1096 aaKnown RBP9.11□□□□□ -0.95
PTPRD-212ENST00000488774 NLRP13Q86W25 1043 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms