RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 POLR3GLQ9BT43 218 aa14.32□□□□□ -0.12
SKA1-204ENST00000488454 QRICH2Q9H0J4 1663 aa14.3□□□□□ -0.12
SKA1-204ENST00000488454 TMC1Q8TDI8 760 aa14.3□□□□□ -0.12
SKA1-204ENST00000488454 ORAI2Q96SN7 254 aa14.3□□□□□ -0.12
SKA1-204ENST00000488454 CDC42BPGQ6DT37 1551 aa14.3□□□□□ -0.12
SKA1-204ENST00000488454 NALCNQ8IZF0 1738 aa14.29□□□□□ -0.12
SKA1-204ENST00000488454 XIRP1Q702N8 1843 aaKnown RBP14.29□□□□□ -0.12
SKA1-204ENST00000488454 PHF8Q9UPP1 1060 aa14.29□□□□□ -0.12
SKA1-204ENST00000488454 ATAD2Q6PL18 1390 aa14.29□□□□□ -0.12
SKA1-204ENST00000488454 MST1RQ04912 1400 aa14.29□□□□□ -0.12
SKA1-204ENST00000488454 ANKARQ7Z5J8 1434 aa14.29□□□□□ -0.12
SKA1-204ENST00000488454 C1orf167Q5SNV9 1468 aa14.29□□□□□ -0.12
SKA1-204ENST00000488454 ADGRB2O60241 1585 aa14.29□□□□□ -0.12
SKA1-204ENST00000488454 KLHL34Q8N239 644 aa14.28□□□□□ -0.12
SKA1-204ENST00000488454 NGDNQ8NEJ9 315 aaKnown RBP14.28□□□□□ -0.12
SKA1-204ENST00000488454 CABP1Q9NZU7 370 aa14.28□□□□□ -0.12
SKA1-204ENST00000488454 PRR36Q9H6K5 1346 aa14.27□□□□□ -0.12
SKA1-204ENST00000488454 BRINP3Q76B58 766 aa14.27□□□□□ -0.13
SKA1-204ENST00000488454 IFNLR1Q8IU57 520 aaPredicted RBP14.27□□□□□ -0.13
SKA1-204ENST00000488454 PMFBP1Q8TBY8 1022 aa14.27□□□□□ -0.13
SKA1-204ENST00000488454 TULP4Q9NRJ4 1543 aa14.26□□□□□ -0.13
SKA1-204ENST00000488454 DISP3Q9P2K9 1392 aa14.26□□□□□ -0.13
SKA1-204ENST00000488454 PSME1Q06323 249 aa14.26□□□□□ -0.13
SKA1-204ENST00000488454 FBXO41Q8TF61 875 aa14.26□□□□□ -0.13
SKA1-204ENST00000488454 ZRANB1Q9UGI0 708 aa14.26□□□□□ -0.13
SKA1-204ENST00000488454 PLEKHG3A1L390 1219 aa14.25□□□□□ -0.13
SKA1-204ENST00000488454 FOXO3O43524 673 aa14.25□□□□□ -0.13
SKA1-204ENST00000488454 PAK3O75914 559 aaPredicted RBP14.25□□□□□ -0.13
SKA1-204ENST00000488454 NUBP1P53384 320 aa14.25□□□□□ -0.13
SKA1-204ENST00000488454 RASEFQ8IZ41 740 aa14.25□□□□□ -0.13
SKA1-204ENST00000488454 C11orf95C9JLR9 678 aaPredicted RBP14.24□□□□□ -0.13
SKA1-204ENST00000488454 SLC12A5Q9H2X9 1139 aa14.24□□□□□ -0.13
SKA1-204ENST00000488454 TERF2IPQ9NYB0 399 aa14.24□□□□□ -0.13
SKA1-204ENST00000488454 PPIP5K1Q6PFW1 1433 aa14.24□□□□□ -0.13
SKA1-204ENST00000488454 NPHP3Q7Z494 1330 aa14.23□□□□□ -0.13
SKA1-204ENST00000488454 HDGFL2Q7Z4V5 671 aaPredicted RBP14.23□□□□□ -0.13
SKA1-204ENST00000488454 FMN2Q9NZ56 1722 aa14.23□□□□□ -0.13
SKA1-204ENST00000488454 NINLQ9Y2I6 1382 aa14.22□□□□□ -0.13
SKA1-204ENST00000488454 ACEP12821 1306 aa14.22□□□□□ -0.13
SKA1-204ENST00000488454 KRT28Q7Z3Y7 464 aa14.22□□□□□ -0.13
SKA1-204ENST00000488454 ATP7BP35670 1465 aa14.22□□□□□ -0.13
SKA1-204ENST00000488454 KIF7Q2M1P5 1343 aa14.21□□□□□ -0.13
SKA1-204ENST00000488454 ZNF579Q8NAF0 562 aaKnown RBP14.2□□□□□ -0.14
SKA1-204ENST00000488454 DDX17Q92841 729 aaKnown RBP14.2□□□□□ -0.14
SKA1-204ENST00000488454 TSPYL2Q9H2G4 693 aaPredicted RBP14.2□□□□□ -0.14
SKA1-204ENST00000488454 ZNF316A6NFI3 1004 aaPredicted RBP14.19□□□□□ -0.14
SKA1-204ENST00000488454 XPCQ01831 940 aaPredicted RBP14.19□□□□□ -0.14
SKA1-204ENST00000488454 CCDC7Q96M83 1385 aa14.19□□□□□ -0.14
SKA1-204ENST00000488454 WASHC2AQ641Q2 1341 aa14.18□□□□□ -0.14
SKA1-204ENST00000488454 LRRC59Q96AG4 307 aaKnown RBP14.18□□□□□ -0.14
SKA1-204ENST00000488454 USP32Q8NFA0 1604 aa14.17□□□□□ -0.14
SKA1-204ENST00000488454 LMOD2Q6P5Q4 547 aa14.17□□□□□ -0.14
SKA1-204ENST00000488454 POLR3AO14802 1390 aaPredicted RBP14.17□□□□□ -0.14
SKA1-204ENST00000488454 ROBO1Q9Y6N7 1651 aa14.17□□□□□ -0.14
SKA1-204ENST00000488454 SOS2Q07890 1332 aaPredicted RBP14.16□□□□□ -0.14
SKA1-204ENST00000488454 SOCS7O14512 581 aa14.16□□□□□ -0.14
SKA1-204ENST00000488454 HSPA1LP34931 641 aa14.16□□□□□ -0.14
SKA1-204ENST00000488454 PANK3Q9H999 370 aa14.16□□□□□ -0.14
SKA1-204ENST00000488454 KTN1Q86UP2 1357 aaKnown RBP14.16□□□□□ -0.14
SKA1-204ENST00000488454 KIF1AQ12756 1690 aa14.14□□□□□ -0.15
SKA1-204ENST00000488454 BRD4O60885 1362 aaPredicted RBP14.14□□□□□ -0.15
SKA1-204ENST00000488454 ANKRD36BQ8N2N9 1353 aa14.14□□□□□ -0.15
SKA1-204ENST00000488454 ITSN1Q15811 1721 aa14.14□□□□□ -0.15
SKA1-204ENST00000488454 RGPD8O14715 1765 aaPredicted RBP14.14□□□□□ -0.15
SKA1-204ENST00000488454 GABBR2O75899 941 aa14.13□□□□□ -0.15
SKA1-204ENST00000488454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.13□□□□□ -0.15
SKA1-204ENST00000488454 ABTB2Q8N961 1025 aa14.13□□□□□ -0.15
SKA1-204ENST00000488454 SPOCK2Q92563 424 aa14.13□□□□□ -0.15
SKA1-204ENST00000488454 PHF12Q96QT6 1004 aa14.13□□□□□ -0.15
SKA1-204ENST00000488454 CPSF1Q10570 1443 aaKnown RBP14.13□□□□□ -0.15
SKA1-204ENST00000488454 TTC21BQ7Z4L5 1316 aa14.13□□□□□ -0.15
SKA1-204ENST00000488454 A0A1W2PP64 1363 aa14.12□□□□□ -0.15
SKA1-204ENST00000488454 SBNO1A3KN83 1393 aa14.12□□□□□ -0.15
SKA1-204ENST00000488454 FAM212AQ96EL1 285 aa14.12□□□□□ -0.15
SKA1-204ENST00000488454 KNSTRNQ9Y448 316 aa14.12□□□□□ -0.15
SKA1-204ENST00000488454 USP6P35125 1406 aa14.12□□□□□ -0.15
SKA1-204ENST00000488454 SPATA31A3Q5VYP0 1347 aa14.12□□□□□ -0.15
SKA1-204ENST00000488454 TTC21AQ8NDW8 1320 aa14.12□□□□□ -0.15
SKA1-204ENST00000488454 AHDC1Q5TGY3 1603 aaPredicted RBP14.11□□□□□ -0.15
SKA1-204ENST00000488454 TOPAZ1Q8N9V7 1692 aa14.1□□□□□ -0.15
SKA1-204ENST00000488454 DDX10Q13206 875 aaKnown RBP14.1□□□□□ -0.15
SKA1-204ENST00000488454 NLRP13Q86W25 1043 aa14.1□□□□□ -0.15
SKA1-204ENST00000488454 CARD14Q9BXL6 1004 aa14.1□□□□□ -0.15
SKA1-204ENST00000488454 ARHGEF10O15013 1369 aa14.09□□□□□ -0.15
SKA1-204ENST00000488454 EDC4Q6P2E9 1401 aaKnown RBP14.09□□□□□ -0.15
SKA1-204ENST00000488454 HAP1P54257 671 aaPredicted RBP14.09□□□□□ -0.15
SKA1-204ENST00000488454 NLRP6P59044 892 aa14.09□□□□□ -0.15
SKA1-204ENST00000488454 NUTM2GQ5VZR2 741 aa14.09□□□□□ -0.15
SKA1-204ENST00000488454 PXDNQ92626 1479 aa14.09□□□□□ -0.15
SKA1-204ENST00000488454 CD163L1Q9NR16 1453 aa14.09□□□□□ -0.15
SKA1-204ENST00000488454 JCADQ9P266 1359 aa14.09□□□□□ -0.15
SKA1-204ENST00000488454 CGNL1Q0VF96 1302 aa14.08□□□□□ -0.16
SKA1-204ENST00000488454 TNS3Q68CZ2 1445 aa14.07□□□□□ -0.16
SKA1-204ENST00000488454 PHLPP1O60346 1717 aa14.07□□□□□ -0.16
SKA1-204ENST00000488454 ILDR2Q71H61 639 aa14.07□□□□□ -0.16
SKA1-204ENST00000488454 NME9Q86XW9 330 aa14.07□□□□□ -0.16
SKA1-204ENST00000488454 NHSL1Q5SYE7 1610 aa14.07□□□□□ -0.16
SKA1-204ENST00000488454 SSH2Q76I76 1423 aa14.07□□□□□ -0.16
SKA1-204ENST00000488454 NSD3Q9BZ95 1437 aa14.07□□□□□ -0.16
SKA1-204ENST00000488454 CLCN6P51797 869 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms