RNA–Protein interactions for RNA: ENST00000488250.5

RAPGEF3-211, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 1,947 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-211ENST00000488250 PLIN1O60240 522 aa20.92■□□□□ 0.94
RAPGEF3-211ENST00000488250 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.92■□□□□ 0.94
RAPGEF3-211ENST00000488250 ADAMTSL3P82987 1691 aa20.92■□□□□ 0.94
RAPGEF3-211ENST00000488250 THEMISQ8N1K5 641 aaPredicted RBP20.92■□□□□ 0.94
RAPGEF3-211ENST00000488250 TBX22Q9Y458 520 aa20.92■□□□□ 0.94
RAPGEF3-211ENST00000488250 AKAP12Q02952 1782 aa20.91■□□□□ 0.94
RAPGEF3-211ENST00000488250 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.91■□□□□ 0.94
RAPGEF3-211ENST00000488250 PTPRUQ92729 1446 aa20.9■□□□□ 0.94
RAPGEF3-211ENST00000488250 PLEKHF1Q96S99 279 aa20.89■□□□□ 0.93
RAPGEF3-211ENST00000488250 ZNF692Q9BU19 519 aaPredicted RBP20.89■□□□□ 0.93
RAPGEF3-211ENST00000488250 PTCH1Q13635 1447 aa20.89■□□□□ 0.93
RAPGEF3-211ENST00000488250 TOPAZ1Q8N9V7 1692 aa20.89■□□□□ 0.93
RAPGEF3-211ENST00000488250 ITSN1Q15811 1721 aa20.88■□□□□ 0.93
RAPGEF3-211ENST00000488250 CRBNQ96SW2 442 aa20.88■□□□□ 0.93
RAPGEF3-211ENST00000488250 AATKQ6ZMQ8 1374 aa20.88■□□□□ 0.93
RAPGEF3-211ENST00000488250 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.88■□□□□ 0.93
RAPGEF3-211ENST00000488250 PRR36Q9H6K5 1346 aa20.87■□□□□ 0.93
RAPGEF3-211ENST00000488250 DIAPH1O60610 1272 aaKnown RBP20.87■□□□□ 0.93
RAPGEF3-211ENST00000488250 RIMS1Q86UR5 1692 aaKnown RBP20.86■□□□□ 0.93
RAPGEF3-211ENST00000488250 PNNQ9H307 717 aaKnown RBP20.86■□□□□ 0.93
RAPGEF3-211ENST00000488250 POLKQ9UBT6 870 aa20.86■□□□□ 0.93
RAPGEF3-211ENST00000488250 RRP7AQ9Y3A4 280 aaKnown RBP20.86■□□□□ 0.93
RAPGEF3-211ENST00000488250 C20orf194Q5TEA3 1177 aa20.85■□□□□ 0.93
RAPGEF3-211ENST00000488250 SLC26A8Q96RN1 970 aa20.84■□□□□ 0.93
RAPGEF3-211ENST00000488250 PLEKHG3A1L390 1219 aa20.84■□□□□ 0.93
RAPGEF3-211ENST00000488250 U2SURPO15042 1029 aaKnown RBP20.84■□□□□ 0.93
RAPGEF3-211ENST00000488250 NEUROD2Q15784 382 aa20.84■□□□□ 0.93
RAPGEF3-211ENST00000488250 CEP170BQ9Y4F5 1589 aaPredicted RBP20.84■□□□□ 0.93
RAPGEF3-211ENST00000488250 CDK12Q9NYV4 1490 aaPredicted RBP20.83■□□□□ 0.92
RAPGEF3-211ENST00000488250 NRKQ7Z2Y5 1582 aa20.83■□□□□ 0.92
RAPGEF3-211ENST00000488250 NME9Q86XW9 330 aa20.82■□□□□ 0.92
RAPGEF3-211ENST00000488250 AMOTL2Q9Y2J4 779 aa20.82■□□□□ 0.92
RAPGEF3-211ENST00000488250 XRN1Q8IZH2 1706 aaKnown RBP20.82■□□□□ 0.92
RAPGEF3-211ENST00000488250 NCKAP5LQ9HCH0 1330 aa20.82■□□□□ 0.92
RAPGEF3-211ENST00000488250 PIK3R4Q99570 1358 aa20.81■□□□□ 0.92
RAPGEF3-211ENST00000488250 MAP2P11137 1827 aaKnown RBP20.81■□□□□ 0.92
RAPGEF3-211ENST00000488250 TMPOP42166 694 aaKnown RBP20.81■□□□□ 0.92
RAPGEF3-211ENST00000488250 MYH16Q9H6N6 1097 aa20.81■□□□□ 0.92
RAPGEF3-211ENST00000488250 FCHSD2O94868 740 aa20.8■□□□□ 0.92
RAPGEF3-211ENST00000488250 MAPK8IP3Q9UPT6 1336 aa20.8■□□□□ 0.92
RAPGEF3-211ENST00000488250 COG3Q96JB2 828 aa20.8■□□□□ 0.92
RAPGEF3-211ENST00000488250 BCAR3O75815 825 aa20.78■□□□□ 0.92
RAPGEF3-211ENST00000488250 IL16Q14005 1332 aa20.78■□□□□ 0.92
RAPGEF3-211ENST00000488250 PDE3AQ14432 1141 aa20.78■□□□□ 0.92
RAPGEF3-211ENST00000488250 FANCIQ9NVI1 1328 aa20.78■□□□□ 0.92
RAPGEF3-211ENST00000488250 LRRC7Q96NW7 1537 aa20.77■□□□□ 0.92
RAPGEF3-211ENST00000488250 TRIM35Q9UPQ4 493 aa20.77■□□□□ 0.92
RAPGEF3-211ENST00000488250 ZNF142P52746 1687 aaPredicted RBP20.77■□□□□ 0.91
RAPGEF3-211ENST00000488250 USP6P35125 1406 aa20.77■□□□□ 0.91
RAPGEF3-211ENST00000488250 CT47B1P0C2W7 299 aaPredicted RBP20.76■□□□□ 0.91
RAPGEF3-211ENST00000488250 ACEP12821 1306 aa20.76■□□□□ 0.91
RAPGEF3-211ENST00000488250 TTC21BQ7Z4L5 1316 aa20.76■□□□□ 0.91
RAPGEF3-211ENST00000488250 RSPH6AQ9H0K4 717 aa20.76■□□□□ 0.91
RAPGEF3-211ENST00000488250 SSH2Q76I76 1423 aa20.75■□□□□ 0.91
RAPGEF3-211ENST00000488250 RARSP54136 660 aaKnown RBP20.75■□□□□ 0.91
RAPGEF3-211ENST00000488250 PLPPR3Q6T4P5 718 aa20.75■□□□□ 0.91
RAPGEF3-211ENST00000488250 ZRANB1Q9UGI0 708 aa20.75■□□□□ 0.91
RAPGEF3-211ENST00000488250 IL13P35225 146 aa20.74■□□□□ 0.91
RAPGEF3-211ENST00000488250 OVOS2A0A0J9YW53 1432 aa20.74■□□□□ 0.91
RAPGEF3-211ENST00000488250 OVOS2Q6IE36 1432 aa20.74■□□□□ 0.91
RAPGEF3-211ENST00000488250 KDM2BQ8NHM5 1336 aa20.74■□□□□ 0.91
RAPGEF3-211ENST00000488250 EMILIN1Q9Y6C2 1016 aa20.74■□□□□ 0.91
RAPGEF3-211ENST00000488250 TCERG1O14776 1098 aaKnown RBP20.73■□□□□ 0.91
RAPGEF3-211ENST00000488250 FBLN1P23142 703 aa20.73■□□□□ 0.91
RAPGEF3-211ENST00000488250 PPM1GO15355 546 aaPredicted RBP20.72■□□□□ 0.91
RAPGEF3-211ENST00000488250 NALCNQ8IZF0 1738 aa20.72■□□□□ 0.91
RAPGEF3-211ENST00000488250 ANKARQ7Z5J8 1434 aa20.71■□□□□ 0.91
RAPGEF3-211ENST00000488250 RIPK4P57078 832 aa20.71■□□□□ 0.91
RAPGEF3-211ENST00000488250 SETD1BQ9UPS6 1966 aaKnown RBP20.71■□□□□ 0.91
RAPGEF3-211ENST00000488250 CENPQQ7L2Z9 268 aaPredicted RBP20.7■□□□□ 0.91
RAPGEF3-211ENST00000488250 USP31Q70CQ4 1352 aa20.7■□□□□ 0.9
RAPGEF3-211ENST00000488250 MS4A1P11836 297 aa20.7■□□□□ 0.9
RAPGEF3-211ENST00000488250 TTC21AQ8NDW8 1320 aa20.69■□□□□ 0.9
RAPGEF3-211ENST00000488250 NEFMP07197 916 aa20.69■□□□□ 0.9
RAPGEF3-211ENST00000488250 PRKAR2BP31323 418 aa20.69■□□□□ 0.9
RAPGEF3-211ENST00000488250 AAMPQ13685 434 aa20.68■□□□□ 0.9
RAPGEF3-211ENST00000488250 ANKLE2Q86XL3 938 aa20.67■□□□□ 0.9
RAPGEF3-211ENST00000488250 NFE2L2Q16236 605 aa20.66■□□□□ 0.9
RAPGEF3-211ENST00000488250 KCNA6P17658 529 aa20.66■□□□□ 0.9
RAPGEF3-211ENST00000488250 RRS1Q15050 365 aaKnown RBP20.66■□□□□ 0.9
RAPGEF3-211ENST00000488250 CANXP27824 592 aaKnown RBP20.65■□□□□ 0.9
RAPGEF3-211ENST00000488250 FMN2Q9NZ56 1722 aa20.65■□□□□ 0.9
RAPGEF3-211ENST00000488250 CHD2O14647 1828 aaKnown RBP20.65■□□□□ 0.9
RAPGEF3-211ENST00000488250 NUTM2FA1L443 756 aa20.65■□□□□ 0.9
RAPGEF3-211ENST00000488250 TSR2Q969E8 191 aaKnown RBP20.63■□□□□ 0.89
RAPGEF3-211ENST00000488250 PHACTR3Q96KR7 559 aa20.63■□□□□ 0.89
RAPGEF3-211ENST00000488250 HMOX1P09601 288 aa20.63■□□□□ 0.89
RAPGEF3-211ENST00000488250 CALD1Q05682 793 aaKnown RBP20.63■□□□□ 0.89
RAPGEF3-211ENST00000488250 RGPD8O14715 1765 aaPredicted RBP20.62■□□□□ 0.89
RAPGEF3-211ENST00000488250 EXOSC9Q06265 439 aaKnown RBP20.62■□□□□ 0.89
RAPGEF3-211ENST00000488250 KDM4FA0A1W2PPD8 638 aa20.61■□□□□ 0.89
RAPGEF3-211ENST00000488250 PANK1Q8TE04 598 aa20.61■□□□□ 0.89
RAPGEF3-211ENST00000488250 FRAT1Q92837 279 aaPredicted RBP20.61■□□□□ 0.89
RAPGEF3-211ENST00000488250 CLUAP1Q96AJ1 413 aa20.6■□□□□ 0.89
RAPGEF3-211ENST00000488250 PEAK1Q9H792 1746 aa20.6■□□□□ 0.89
RAPGEF3-211ENST00000488250 NGDNQ8NEJ9 315 aaKnown RBP20.59■□□□□ 0.89
RAPGEF3-211ENST00000488250 PMFBP1Q8TBY8 1022 aa20.59■□□□□ 0.89
RAPGEF3-211ENST00000488250 USP54Q70EL1 1684 aa20.59■□□□□ 0.89
RAPGEF3-211ENST00000488250 RGPD1P0DJD0 1748 aa20.59■□□□□ 0.89
RAPGEF3-211ENST00000488250 LMOD3Q0VAK6 560 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms