RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 NOB1Q9ULX3 412 aaKnown RBP15.4■□□□□ 0.06
COL3A1-206ENST00000487010 COL3A1P02461 1466 aaPredicted RBP15.4■□□□□ 0.06
COL3A1-206ENST00000487010 FRMPD1Q5SYB0 1578 aa15.4■□□□□ 0.06
COL3A1-206ENST00000487010 U2SURPO15042 1029 aaKnown RBP15.4■□□□□ 0.06
COL3A1-206ENST00000487010 ABCC11Q96J66 1382 aa15.4■□□□□ 0.06
COL3A1-206ENST00000487010 HECW2Q9P2P5 1572 aa15.39■□□□□ 0.05
COL3A1-206ENST00000487010 TRAK2O60296 914 aa15.39■□□□□ 0.05
COL3A1-206ENST00000487010 TMEM57Q8N5G2 664 aa15.39■□□□□ 0.05
COL3A1-206ENST00000487010 ZBTB40Q9NUA8 1239 aa15.39■□□□□ 0.05
COL3A1-206ENST00000487010 VGFO15240 615 aaPredicted RBP15.38■□□□□ 0.05
COL3A1-206ENST00000487010 HSCBQ8IWL3 235 aa15.38■□□□□ 0.05
COL3A1-206ENST00000487010 A0A1W2PP64 1363 aa15.38■□□□□ 0.05
COL3A1-206ENST00000487010 CAMSAP1Q5T5Y3 1602 aa15.37■□□□□ 0.05
COL3A1-206ENST00000487010 ZNF692Q9BU19 519 aaPredicted RBP15.37■□□□□ 0.05
COL3A1-206ENST00000487010 GZF1Q9H116 711 aaPredicted RBP15.37■□□□□ 0.05
COL3A1-206ENST00000487010 MLH3Q9UHC1 1453 aa15.37■□□□□ 0.05
COL3A1-206ENST00000487010 ABCC3O15438 1527 aa15.37■□□□□ 0.05
COL3A1-206ENST00000487010 NEXMIFQ5QGS0 1516 aa15.37■□□□□ 0.05
COL3A1-206ENST00000487010 POGZQ7Z3K3 1410 aa15.37■□□□□ 0.05
COL3A1-206ENST00000487010 PIK3C2BO00750 1634 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 IPO8O15397 1037 aaKnown RBP15.36■□□□□ 0.05
COL3A1-206ENST00000487010 RBM25P49756 843 aaKnown RBP15.36■□□□□ 0.05
COL3A1-206ENST00000487010 NUCB1Q02818 461 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 NUTM2DQ5VT03 806 aaPredicted RBP15.36■□□□□ 0.05
COL3A1-206ENST00000487010 GGNBP2Q9H3C7 697 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 NCOA3Q9Y6Q9 1424 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 ANKRD26Q9UPS8 1709 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 RIPK4P57078 832 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 KIF16BQ96L93 1317 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 ARXQ96QS3 562 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 SIGLEC1Q9BZZ2 1709 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 CFAP74Q9C0B2 1584 aa15.36■□□□□ 0.05
COL3A1-206ENST00000487010 DDIT3P35638 169 aa15.35■□□□□ 0.05
COL3A1-206ENST00000487010 SNX21Q969T3 373 aa15.35■□□□□ 0.05
COL3A1-206ENST00000487010 DDX11L8A8MPP1 907 aa15.34■□□□□ 0.05
COL3A1-206ENST00000487010 MED14O60244 1454 aa15.34■□□□□ 0.05
COL3A1-206ENST00000487010 SAFB2Q14151 953 aaKnown RBP eCLIP15.34■□□□□ 0.05
COL3A1-206ENST00000487010 ALDH1L2Q3SY69 923 aa15.34■□□□□ 0.05
COL3A1-206ENST00000487010 PANK2Q9BZ23 570 aa15.34■□□□□ 0.05
COL3A1-206ENST00000487010 FYB1O15117 783 aa15.33■□□□□ 0.04
COL3A1-206ENST00000487010 MRE11P49959 708 aa15.32■□□□□ 0.04
COL3A1-206ENST00000487010 SRPK2P78362 688 aaKnown RBP15.32■□□□□ 0.04
COL3A1-206ENST00000487010 PNNQ9H307 717 aaKnown RBP15.32■□□□□ 0.04
COL3A1-206ENST00000487010 CHD1LQ86WJ1 897 aa15.32■□□□□ 0.04
COL3A1-206ENST00000487010 DIAPH1O60610 1272 aaKnown RBP15.31■□□□□ 0.04
COL3A1-206ENST00000487010 LNPKQ9C0E8 428 aa15.31■□□□□ 0.04
COL3A1-206ENST00000487010 TERF2IPQ9NYB0 399 aa15.31■□□□□ 0.04
COL3A1-206ENST00000487010 NPM1P06748 294 aaKnown RBP eCLIP15.31■□□□□ 0.04
COL3A1-206ENST00000487010 ATAD2Q6PL18 1390 aa15.3■□□□□ 0.04
COL3A1-206ENST00000487010 PNPLA6Q8IY17 1366 aa15.3■□□□□ 0.04
COL3A1-206ENST00000487010 ZFYVE9O95405 1425 aa15.3■□□□□ 0.04
COL3A1-206ENST00000487010 BRPF1P55201 1214 aaPredicted RBP15.3■□□□□ 0.04
COL3A1-206ENST00000487010 CD163L1Q9NR16 1453 aa15.3■□□□□ 0.04
COL3A1-206ENST00000487010 BMP2KLQ5H9B9 411 aa15.29■□□□□ 0.04
COL3A1-206ENST00000487010 UBE2Q2Q8WVN8 375 aa15.29■□□□□ 0.04
COL3A1-206ENST00000487010 STK26Q9P289 416 aa15.29■□□□□ 0.04
COL3A1-206ENST00000487010 ISY1Q9ULR0 285 aaKnown RBP15.29■□□□□ 0.04
COL3A1-206ENST00000487010 CIZ1Q9ULV3 898 aaPredicted RBP15.29■□□□□ 0.04
COL3A1-206ENST00000487010 CLCN1P35523 988 aa15.29■□□□□ 0.04
COL3A1-206ENST00000487010 CLTCQ00610 1675 aaKnown RBP15.29■□□□□ 0.04
COL3A1-206ENST00000487010 ZNF428Q96B54 188 aa15.28■□□□□ 0.04
COL3A1-206ENST00000487010 GRPEL1Q9HAV7 217 aa15.28■□□□□ 0.04
COL3A1-206ENST00000487010 CDC42BPGQ6DT37 1551 aa15.28■□□□□ 0.04
COL3A1-206ENST00000487010 PTPRMP28827 1452 aa15.28■□□□□ 0.04
COL3A1-206ENST00000487010 FCHSD2O94868 740 aa15.28■□□□□ 0.04
COL3A1-206ENST00000487010 TNPO1Q92973 898 aaKnown RBP15.28■□□□□ 0.04
COL3A1-206ENST00000487010 HSP90AB1P08238 724 aaKnown RBP15.27■□□□□ 0.03
COL3A1-206ENST00000487010 ZBTB7BO15156 539 aaPredicted RBP15.26■□□□□ 0.03
COL3A1-206ENST00000487010 IDI1Q13907 227 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 RAB3GAP1Q15042 981 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 GCC1Q96CN9 775 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 KIF2CQ99661 725 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 PPIP5K1Q6PFW1 1433 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 LRRC7Q96NW7 1537 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 ANKRD45Q5TZF3 282 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 GBP4Q96PP9 640 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 CHMP4BQ9H444 224 aaKnown RBP15.26■□□□□ 0.03
COL3A1-206ENST00000487010 KIF20BQ96Q89 1820 aa15.26■□□□□ 0.03
COL3A1-206ENST00000487010 MINK1Q8N4C8 1332 aaPredicted RBP15.25■□□□□ 0.03
COL3A1-206ENST00000487010 ARHGAP31Q2M1Z3 1444 aa15.25■□□□□ 0.03
COL3A1-206ENST00000487010 FAM135BQ49AJ0 1406 aa15.25■□□□□ 0.03
COL3A1-206ENST00000487010 HDGFL2Q7Z4V5 671 aaPredicted RBP15.24■□□□□ 0.03
COL3A1-206ENST00000487010 ARHGAP45Q92619 1136 aa15.24■□□□□ 0.03
COL3A1-206ENST00000487010 PRAM1Q96QH2 718 aa15.24■□□□□ 0.03
COL3A1-206ENST00000487010 PIK3R4Q99570 1358 aa15.24■□□□□ 0.03
COL3A1-206ENST00000487010 MYO5BQ9ULV0 1848 aa15.24■□□□□ 0.03
COL3A1-206ENST00000487010 PRKAR2BP31323 418 aa15.24■□□□□ 0.03
COL3A1-206ENST00000487010 MRPL50Q8N5N7 158 aaKnown RBP15.24■□□□□ 0.03
COL3A1-206ENST00000487010 SENP3Q9H4L4 574 aaPredicted RBP15.24■□□□□ 0.03
COL3A1-206ENST00000487010 VAMP4O75379 141 aa15.23■□□□□ 0.03
COL3A1-206ENST00000487010 PTMSP20962 102 aa15.23■□□□□ 0.03
COL3A1-206ENST00000487010 SKOR2Q2VWA4 1001 aaPredicted RBP15.23■□□□□ 0.03
COL3A1-206ENST00000487010 PTCH1Q13635 1447 aa15.23■□□□□ 0.03
COL3A1-206ENST00000487010 RAPGEF3O95398 923 aa15.23■□□□□ 0.03
COL3A1-206ENST00000487010 SLC52A1Q9NWF4 448 aa15.23■□□□□ 0.03
COL3A1-206ENST00000487010 DIP2CQ9Y2E4 1556 aa15.23■□□□□ 0.03
COL3A1-206ENST00000487010 YTHDC2Q9H6S0 1430 aaKnown RBP15.22■□□□□ 0.03
COL3A1-206ENST00000487010 TBC1D9Q6ZT07 1266 aa15.22■□□□□ 0.03
COL3A1-206ENST00000487010 K7ELQ4 463 aaPredicted RBP15.21■□□□□ 0.03
COL3A1-206ENST00000487010 CD2BP2O95400 341 aaKnown RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms