RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 GALR2O43603 387 aaPredicted RBP10.09□□□□□ -0.79
VPS50-218ENST00000485994 SAFB2Q14151 953 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS50-218ENST00000485994 NBPF1Q3BBV0 1214 aa10.09□□□□□ -0.79
VPS50-218ENST00000485994 ZRANB1Q9UGI0 708 aa10.09□□□□□ -0.79
VPS50-218ENST00000485994 KIF1AQ12756 1690 aa10.09□□□□□ -0.79
VPS50-218ENST00000485994 COL22A1Q8NFW1 1626 aaPredicted RBP10.08□□□□□ -0.8
VPS50-218ENST00000485994 NUTM2BA6NNL0 878 aaPredicted RBP10.08□□□□□ -0.8
VPS50-218ENST00000485994 NUTM2EB1AL46 878 aaPredicted RBP10.08□□□□□ -0.8
VPS50-218ENST00000485994 POTEB2H3BUK9 544 aa10.08□□□□□ -0.8
VPS50-218ENST00000485994 NUTM2AQ8IVF1 878 aaPredicted RBP10.08□□□□□ -0.8
VPS50-218ENST00000485994 FNBP4Q8N3X1 1017 aaPredicted RBP10.08□□□□□ -0.8
VPS50-218ENST00000485994 SBNO1A3KN83 1393 aa10.08□□□□□ -0.8
VPS50-218ENST00000485994 AFF2P51816 1311 aa10.07□□□□□ -0.8
VPS50-218ENST00000485994 MINK1Q8N4C8 1332 aaPredicted RBP10.07□□□□□ -0.8
VPS50-218ENST00000485994 RXRBP28702 533 aa10.06□□□□□ -0.8
VPS50-218ENST00000485994 NEUROD1Q13562 356 aa10.06□□□□□ -0.8
VPS50-218ENST00000485994 HIRIP3Q9BW71 556 aaPredicted RBP10.06□□□□□ -0.8
VPS50-218ENST00000485994 QTRT2Q9H974 415 aaKnown RBP10.06□□□□□ -0.8
VPS50-218ENST00000485994 ARHGEF28Q8N1W1 1705 aaKnown RBP10.06□□□□□ -0.8
VPS50-218ENST00000485994 PRR36Q9H6K5 1346 aa10.06□□□□□ -0.8
VPS50-218ENST00000485994 USP32Q8NFA0 1604 aa10.05□□□□□ -0.8
VPS50-218ENST00000485994 PLEKHG3A1L390 1219 aa10.05□□□□□ -0.8
VPS50-218ENST00000485994 ZNF579Q8NAF0 562 aaKnown RBP10.05□□□□□ -0.8
VPS50-218ENST00000485994 NUDT16Q96DE0 195 aaKnown RBP10.05□□□□□ -0.8
VPS50-218ENST00000485994 OTUD5Q96G74 571 aa10.05□□□□□ -0.8
VPS50-218ENST00000485994 NGLY1Q96IV0 654 aa10.05□□□□□ -0.8
VPS50-218ENST00000485994 CDK19Q9BWU1 502 aa10.05□□□□□ -0.8
VPS50-218ENST00000485994 CREBZFQ9NS37 354 aa10.05□□□□□ -0.8
VPS50-218ENST00000485994 CCDC61Q9Y6R9 512 aa10.05□□□□□ -0.8
VPS50-218ENST00000485994 TULP4Q9NRJ4 1543 aa10.05□□□□□ -0.8
VPS50-218ENST00000485994 RBM6P78332 1123 aaKnown RBP10.04□□□□□ -0.8
VPS50-218ENST00000485994 XPCQ01831 940 aaPredicted RBP10.04□□□□□ -0.8
VPS50-218ENST00000485994 PMFBP1Q8TBY8 1022 aa10.04□□□□□ -0.8
VPS50-218ENST00000485994 C8orf37Q96NL8 207 aa10.04□□□□□ -0.8
VPS50-218ENST00000485994 CENPJQ9HC77 1338 aaPredicted RBP10.04□□□□□ -0.8
VPS50-218ENST00000485994 CDK12Q9NYV4 1490 aaPredicted RBP10.04□□□□□ -0.8
VPS50-218ENST00000485994 ARHGEF10O15013 1369 aa10.03□□□□□ -0.8
VPS50-218ENST00000485994 GPRASP1Q5JY77 1395 aa10.03□□□□□ -0.8
VPS50-218ENST00000485994 TNS3Q68CZ2 1445 aa10.02□□□□□ -0.81
VPS50-218ENST00000485994 ADAMTS2O95450 1211 aa10.02□□□□□ -0.81
VPS50-218ENST00000485994 NBPF8Q3BBV2 869 aa10.02□□□□□ -0.81
VPS50-218ENST00000485994 TRPC5Q9UL62 973 aaPredicted RBP10.02□□□□□ -0.81
VPS50-218ENST00000485994 TIMELESSQ9UNS1 1208 aa10.02□□□□□ -0.81
VPS50-218ENST00000485994 POLR3AO14802 1390 aaPredicted RBP10.01□□□□□ -0.81
VPS50-218ENST00000485994 BRD4O60885 1362 aaPredicted RBP10.01□□□□□ -0.81
VPS50-218ENST00000485994 NGDNQ8NEJ9 315 aaKnown RBP10.01□□□□□ -0.81
VPS50-218ENST00000485994 USP21Q9UK80 565 aa10.01□□□□□ -0.81
VPS50-218ENST00000485994 MARF1Q9Y4F3 1742 aaKnown RBP10.01□□□□□ -0.81
VPS50-218ENST00000485994 TRPM1Q7Z4N2 1603 aa10□□□□□ -0.81
VPS50-218ENST00000485994 ATP7BP35670 1465 aa10□□□□□ -0.81
VPS50-218ENST00000485994 BCL9LQ86UU0 1499 aa10□□□□□ -0.81
VPS50-218ENST00000485994 UNC5CLQ8IV45 518 aa10□□□□□ -0.81
VPS50-218ENST00000485994 PHF12Q96QT6 1004 aa10□□□□□ -0.81
VPS50-218ENST00000485994 CLSPNQ9HAW4 1339 aa10□□□□□ -0.81
VPS50-218ENST00000485994 ITSN1Q15811 1721 aa9.99□□□□□ -0.81
VPS50-218ENST00000485994 SLC24A1O60721 1099 aa9.99□□□□□ -0.81
VPS50-218ENST00000485994 PUS7Q96PZ0 661 aaKnown RBP9.99□□□□□ -0.81
VPS50-218ENST00000485994 ACEP12821 1306 aa9.99□□□□□ -0.81
VPS50-218ENST00000485994 EVC2Q86UK5 1308 aa9.99□□□□□ -0.81
VPS50-218ENST00000485994 ROCK2O75116 1388 aaKnown RBP9.99□□□□□ -0.81
VPS50-218ENST00000485994 TRPM3Q9HCF6 1732 aaPredicted RBP9.99□□□□□ -0.81
VPS50-218ENST00000485994 ATRNO75882 1429 aa9.99□□□□□ -0.81
VPS50-218ENST00000485994 SLIT2O94813 1529 aa9.98□□□□□ -0.81
VPS50-218ENST00000485994 ONECUT3O60422 494 aaPredicted RBP9.98□□□□□ -0.81
VPS50-218ENST00000485994 GJD4Q96KN9 370 aaPredicted RBP9.98□□□□□ -0.81
VPS50-218ENST00000485994 ALS2Q96Q42 1657 aa9.98□□□□□ -0.81
VPS50-218ENST00000485994 TONSLQ96HA7 1378 aa9.98□□□□□ -0.81
VPS50-218ENST00000485994 SBNO2Q9Y2G9 1366 aa9.98□□□□□ -0.81
VPS50-218ENST00000485994 FAM83GA6ND36 823 aa9.97□□□□□ -0.81
VPS50-218ENST00000485994 SRPK2P78362 688 aaKnown RBP9.97□□□□□ -0.81
VPS50-218ENST00000485994 PELP1Q8IZL8 1130 aaKnown RBP9.97□□□□□ -0.81
VPS50-218ENST00000485994 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.96□□□□□ -0.81
VPS50-218ENST00000485994 VPS72Q15906 364 aa9.96□□□□□ -0.82
VPS50-218ENST00000485994 LMOD2Q6P5Q4 547 aa9.96□□□□□ -0.82
VPS50-218ENST00000485994 CABLES1Q8TDN4 633 aa9.96□□□□□ -0.82
VPS50-218ENST00000485994 CARD11Q9BXL7 1154 aa9.96□□□□□ -0.82
VPS50-218ENST00000485994 CABP2Q9NPB3 220 aa9.96□□□□□ -0.82
VPS50-218ENST00000485994 CABP1Q9NZU7 370 aa9.96□□□□□ -0.82
VPS50-218ENST00000485994 TOPAZ1Q8N9V7 1692 aa9.96□□□□□ -0.82
VPS50-218ENST00000485994 PAK3O75914 559 aaPredicted RBP9.95□□□□□ -0.82
VPS50-218ENST00000485994 HAP1P54257 671 aaPredicted RBP9.95□□□□□ -0.82
VPS50-218ENST00000485994 UPF1Q92900 1129 aaKnown RBP eCLIP9.95□□□□□ -0.82
VPS50-218ENST00000485994 NWD2Q9ULI1 1742 aa9.94□□□□□ -0.82
VPS50-218ENST00000485994 QRICH2Q9H0J4 1663 aa9.94□□□□□ -0.82
VPS50-218ENST00000485994 RALGAPBQ86X10 1494 aa9.94□□□□□ -0.82
VPS50-218ENST00000485994 NLRP13Q86W25 1043 aa9.94□□□□□ -0.82
VPS50-218ENST00000485994 PPIP5K1Q6PFW1 1433 aa9.93□□□□□ -0.82
VPS50-218ENST00000485994 ATAD2Q6PL18 1390 aa9.93□□□□□ -0.82
VPS50-218ENST00000485994 CLCN6P51797 869 aa9.93□□□□□ -0.82
VPS50-218ENST00000485994 ABTB2Q8N961 1025 aa9.93□□□□□ -0.82
VPS50-218ENST00000485994 RGS12O14924 1447 aa9.92□□□□□ -0.82
VPS50-218ENST00000485994 SSH2Q76I76 1423 aa9.92□□□□□ -0.82
VPS50-218ENST00000485994 USP19O94966 1318 aa9.92□□□□□ -0.82
VPS50-218ENST00000485994 POTEMA6NI47 508 aa9.92□□□□□ -0.82
VPS50-218ENST00000485994 CCDC125Q86Z20 511 aa9.92□□□□□ -0.82
VPS50-218ENST00000485994 ABCA3Q99758 1704 aa9.92□□□□□ -0.82
VPS50-218ENST00000485994 USP6P35125 1406 aa9.91□□□□□ -0.82
VPS50-218ENST00000485994 CPDO75976 1380 aa9.91□□□□□ -0.82
VPS50-218ENST00000485994 CRYBG1Q9Y4K1 1723 aa9.91□□□□□ -0.82
VPS50-218ENST00000485994 GCP02774 474 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms