RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ATAD2Q6PL18 1390 aa24.09■■□□□ 1.45
VIM-205ENST00000485947 SRPK2P78362 688 aaKnown RBP24.08■■□□□ 1.45
VIM-205ENST00000485947 EVC2Q86UK5 1308 aa24.08■■□□□ 1.44
VIM-205ENST00000485947 NBPF8Q3BBV2 869 aa24.07■■□□□ 1.44
VIM-205ENST00000485947 ALS2Q96Q42 1657 aa24.07■■□□□ 1.44
VIM-205ENST00000485947 ACEP12821 1306 aa24.07■■□□□ 1.44
VIM-205ENST00000485947 CABLES1Q8TDN4 633 aa24.06■■□□□ 1.44
VIM-205ENST00000485947 GJD4Q96KN9 370 aaPredicted RBP24.06■■□□□ 1.44
VIM-205ENST00000485947 ZRANB1Q9UGI0 708 aa24.06■■□□□ 1.44
VIM-205ENST00000485947 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.06■■□□□ 1.44
VIM-205ENST00000485947 TOPAZ1Q8N9V7 1692 aa24.05■■□□□ 1.44
VIM-205ENST00000485947 PAK3O75914 559 aaPredicted RBP24.05■■□□□ 1.44
VIM-205ENST00000485947 QRICH2Q9H0J4 1663 aa24.03■■□□□ 1.44
VIM-205ENST00000485947 SBNO2Q9Y2G9 1366 aa24.03■■□□□ 1.44
VIM-205ENST00000485947 PPIP5K1Q6PFW1 1433 aa24.01■■□□□ 1.43
VIM-205ENST00000485947 VPS72Q15906 364 aa24.01■■□□□ 1.43
VIM-205ENST00000485947 CABP2Q9NPB3 220 aa24.01■■□□□ 1.43
VIM-205ENST00000485947 ABCA3Q99758 1704 aa24■■□□□ 1.43
VIM-205ENST00000485947 NWD2Q9ULI1 1742 aa24■■□□□ 1.43
VIM-205ENST00000485947 RALGAPBQ86X10 1494 aa24■■□□□ 1.43
VIM-205ENST00000485947 FAM83GA6ND36 823 aa23.99■■□□□ 1.43
VIM-205ENST00000485947 CARD11Q9BXL7 1154 aa23.99■■□□□ 1.43
VIM-205ENST00000485947 SLC24A1O60721 1099 aa23.97■■□□□ 1.43
VIM-205ENST00000485947 ZNF692Q9BU19 519 aaPredicted RBP23.96■■□□□ 1.43
VIM-205ENST00000485947 CABP1Q9NZU7 370 aa23.96■■□□□ 1.43
VIM-205ENST00000485947 ABTB2Q8N961 1025 aa23.95■■□□□ 1.42
VIM-205ENST00000485947 ONECUT3O60422 494 aaPredicted RBP23.94■■□□□ 1.42
VIM-205ENST00000485947 NLRP13Q86W25 1043 aa23.94■■□□□ 1.42
VIM-205ENST00000485947 PRDM11Q9NQV5 511 aa23.94■■□□□ 1.42
VIM-205ENST00000485947 COL14A1Q05707 1796 aaKnown RBP23.93■■□□□ 1.42
VIM-205ENST00000485947 PUS7Q96PZ0 661 aaKnown RBP23.93■■□□□ 1.42
VIM-205ENST00000485947 PLEKHG5O94827 1062 aa23.92■■□□□ 1.42
VIM-205ENST00000485947 CCDC125Q86Z20 511 aa23.92■■□□□ 1.42
VIM-205ENST00000485947 BTG4Q9NY30 223 aa23.92■■□□□ 1.42
VIM-205ENST00000485947 CRYBG1Q9Y4K1 1723 aa23.92■■□□□ 1.42
VIM-205ENST00000485947 PLCH1Q4KWH8 1693 aa23.92■■□□□ 1.42
VIM-205ENST00000485947 USP6P35125 1406 aa23.92■■□□□ 1.42
VIM-205ENST00000485947 USP19O94966 1318 aa23.91■■□□□ 1.42
VIM-205ENST00000485947 GLI3P10071 1580 aa23.9■■□□□ 1.42
VIM-205ENST00000485947 CPDO75976 1380 aa23.9■■□□□ 1.42
VIM-205ENST00000485947 SSH2Q76I76 1423 aa23.88■■□□□ 1.41
VIM-205ENST00000485947 CCDC9Q9Y3X0 531 aaKnown RBP23.88■■□□□ 1.41
VIM-205ENST00000485947 KIAA0232Q92628 1395 aa23.88■■□□□ 1.41
VIM-205ENST00000485947 TTC21AQ8NDW8 1320 aa23.85■■□□□ 1.41
VIM-205ENST00000485947 CPSF1Q10570 1443 aaKnown RBP23.84■■□□□ 1.41
VIM-205ENST00000485947 PHRF1Q9P1Y6 1649 aaKnown RBP23.84■■□□□ 1.41
VIM-205ENST00000485947 GCP02774 474 aa23.84■■□□□ 1.41
VIM-205ENST00000485947 NUTM2GQ5VZR2 741 aa23.84■■□□□ 1.41
VIM-205ENST00000485947 SEPT12Q8IYM1 358 aa23.84■■□□□ 1.41
VIM-205ENST00000485947 NRAPQ86VF7 1730 aa23.84■■□□□ 1.41
VIM-205ENST00000485947 SPATA31A5Q5VU36 1347 aa23.84■■□□□ 1.41
VIM-205ENST00000485947 SPATA31A7Q8IWB4 1347 aa23.84■■□□□ 1.41
VIM-205ENST00000485947 NLRP6P59044 892 aa23.83■■□□□ 1.41
VIM-205ENST00000485947 ZC3H6P61129 1189 aaKnown RBP23.82■■□□□ 1.4
VIM-205ENST00000485947 TTC21BQ7Z4L5 1316 aa23.81■■□□□ 1.4
VIM-205ENST00000485947 NRKQ7Z2Y5 1582 aa23.8■■□□□ 1.4
VIM-205ENST00000485947 NINLQ9Y2I6 1382 aa23.79■■□□□ 1.4
VIM-205ENST00000485947 KCNH5Q8NCM2 988 aa23.79■■□□□ 1.4
VIM-205ENST00000485947 LRP5O75197 1615 aa23.79■■□□□ 1.4
VIM-205ENST00000485947 KTN1Q86UP2 1357 aaKnown RBP23.78■■□□□ 1.4
VIM-205ENST00000485947 CHRNA2Q15822 529 aa23.78■■□□□ 1.4
VIM-205ENST00000485947 KRT27Q7Z3Y8 459 aa23.78■■□□□ 1.4
VIM-205ENST00000485947 EVA1CP58658 441 aa23.77■■□□□ 1.4
VIM-205ENST00000485947 TESK2Q96S53 571 aa23.77■■□□□ 1.4
VIM-205ENST00000485947 SLIT3O75094 1523 aa23.77■■□□□ 1.4
VIM-205ENST00000485947 SPATA31A1Q5TZJ5 1347 aa23.77■■□□□ 1.4
VIM-205ENST00000485947 BLMP54132 1417 aaPredicted RBP23.76■■□□□ 1.39
VIM-205ENST00000485947 ST20-MTHFSA0A0A6YYL1 179 aa23.76■■□□□ 1.39
VIM-205ENST00000485947 FAM98CQ17RN3 349 aaKnown RBP23.76■■□□□ 1.39
VIM-205ENST00000485947 HDGFL2Q7Z4V5 671 aaPredicted RBP23.76■■□□□ 1.39
VIM-205ENST00000485947 TERF2IPQ9NYB0 399 aa23.76■■□□□ 1.39
VIM-205ENST00000485947 AATKQ6ZMQ8 1374 aa23.76■■□□□ 1.39
VIM-205ENST00000485947 AKAP12Q02952 1782 aa23.75■■□□□ 1.39
VIM-205ENST00000485947 BARGINQ6ZT62 677 aa23.74■■□□□ 1.39
VIM-205ENST00000485947 ZNF316A6NFI3 1004 aaPredicted RBP23.73■■□□□ 1.39
VIM-205ENST00000485947 STRN4Q9NRL3 753 aa23.73■■□□□ 1.39
VIM-205ENST00000485947 THRAP3Q9Y2W1 955 aaKnown RBP23.73■■□□□ 1.39
VIM-205ENST00000485947 A0A0G2JS52 829 aa23.72■■□□□ 1.39
VIM-205ENST00000485947 MYT1Q01538 1121 aa23.72■■□□□ 1.39
VIM-205ENST00000485947 TMC1Q8TDI8 760 aa23.72■■□□□ 1.39
VIM-205ENST00000485947 USP31Q70CQ4 1352 aa23.72■■□□□ 1.39
VIM-205ENST00000485947 LMO7Q8WWI1 1683 aa23.72■■□□□ 1.39
VIM-205ENST00000485947 CAMTA1Q9Y6Y1 1673 aa23.72■■□□□ 1.39
VIM-205ENST00000485947 PIK3C2AO00443 1686 aa23.71■■□□□ 1.39
VIM-205ENST00000485947 USP47Q96K76 1375 aa23.7■■□□□ 1.38
VIM-205ENST00000485947 CDCA8Q53HL2 280 aa23.7■■□□□ 1.38
VIM-205ENST00000485947 DEFB132Q7Z7B7 95 aa23.7■■□□□ 1.38
VIM-205ENST00000485947 SLC12A5Q9H2X9 1139 aa23.7■■□□□ 1.38
VIM-205ENST00000485947 CD163L1Q9NR16 1453 aa23.69■■□□□ 1.38
VIM-205ENST00000485947 EDC4Q6P2E9 1401 aaKnown RBP23.69■■□□□ 1.38
VIM-205ENST00000485947 BRWD3Q6RI45 1802 aa23.69■■□□□ 1.38
VIM-205ENST00000485947 TMF1P82094 1093 aa23.69■■□□□ 1.38
VIM-205ENST00000485947 ARHGEF25Q86VW2 580 aa23.69■■□□□ 1.38
VIM-205ENST00000485947 MON2Q7Z3U7 1717 aa23.68■■□□□ 1.38
VIM-205ENST00000485947 EIF4G2P78344 907 aaKnown RBP eCLIP23.68■■□□□ 1.38
VIM-205ENST00000485947 SF3B2Q13435 895 aaKnown RBP23.68■■□□□ 1.38
VIM-205ENST00000485947 TCP11L2Q8N4U5 519 aa23.68■■□□□ 1.38
VIM-205ENST00000485947 COL5A2P05997 1499 aaPredicted RBP23.68■■□□□ 1.38
VIM-205ENST00000485947 THSD7AQ9UPZ6 1657 aa23.67■■□□□ 1.38
VIM-205ENST00000485947 LARP1Q6PKG0 1096 aaKnown RBP23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms