RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PAK3O75914 559 aaPredicted RBP11.28□□□□□ -0.6
USP40-216ENST00000485943 ORAI2Q96SN7 254 aa11.28□□□□□ -0.6
USP40-216ENST00000485943 PHF8Q9UPP1 1060 aa11.28□□□□□ -0.6
USP40-216ENST00000485943 EVC2Q86UK5 1308 aa11.28□□□□□ -0.6
USP40-216ENST00000485943 ADGRB1O14514 1584 aa11.28□□□□□ -0.6
USP40-216ENST00000485943 JCADQ9P266 1359 aa11.28□□□□□ -0.6
USP40-216ENST00000485943 WASLO00401 505 aaPredicted RBP11.27□□□□□ -0.61
USP40-216ENST00000485943 FOXO3O43524 673 aa11.27□□□□□ -0.61
USP40-216ENST00000485943 KIF1AQ12756 1690 aa11.27□□□□□ -0.61
USP40-216ENST00000485943 QRICH2Q9H0J4 1663 aa11.27□□□□□ -0.61
USP40-216ENST00000485943 FMN2Q9NZ56 1722 aa11.26□□□□□ -0.61
USP40-216ENST00000485943 PITPNM1O00562 1244 aa11.26□□□□□ -0.61
USP40-216ENST00000485943 PMFBP1Q8TBY8 1022 aa11.26□□□□□ -0.61
USP40-216ENST00000485943 CDK19Q9BWU1 502 aa11.26□□□□□ -0.61
USP40-216ENST00000485943 ITSN1Q15811 1721 aa11.26□□□□□ -0.61
USP40-216ENST00000485943 XPCQ01831 940 aaPredicted RBP11.25□□□□□ -0.61
USP40-216ENST00000485943 ANKARQ7Z5J8 1434 aa11.25□□□□□ -0.61
USP40-216ENST00000485943 RGPD8O14715 1765 aaPredicted RBP11.24□□□□□ -0.61
USP40-216ENST00000485943 GSE1Q14687 1217 aa11.24□□□□□ -0.61
USP40-216ENST00000485943 NBPF8Q3BBV2 869 aa11.24□□□□□ -0.61
USP40-216ENST00000485943 DDX17Q92841 729 aaKnown RBP11.24□□□□□ -0.61
USP40-216ENST00000485943 RNF25Q96BH1 459 aaPredicted RBP11.24□□□□□ -0.61
USP40-216ENST00000485943 POLR3GLQ9BT43 218 aa11.24□□□□□ -0.61
USP40-216ENST00000485943 SPATA31A6Q5VVP1 1343 aa11.24□□□□□ -0.61
USP40-216ENST00000485943 RALGAPBQ86X10 1494 aa11.24□□□□□ -0.61
USP40-216ENST00000485943 AHDC1Q5TGY3 1603 aaPredicted RBP11.24□□□□□ -0.61
USP40-216ENST00000485943 KRT28Q7Z3Y7 464 aa11.23□□□□□ -0.61
USP40-216ENST00000485943 TMC1Q8TDI8 760 aa11.23□□□□□ -0.61
USP40-216ENST00000485943 NUDT16Q96DE0 195 aaKnown RBP11.23□□□□□ -0.61
USP40-216ENST00000485943 TULP4Q9NRJ4 1543 aa11.23□□□□□ -0.61
USP40-216ENST00000485943 ADGRB2O60241 1585 aa11.23□□□□□ -0.61
USP40-216ENST00000485943 NHSL1Q5SYE7 1610 aa11.22□□□□□ -0.61
USP40-216ENST00000485943 CABP2Q9NPB3 220 aa11.22□□□□□ -0.61
USP40-216ENST00000485943 CDCA8Q53HL2 280 aa11.21□□□□□ -0.61
USP40-216ENST00000485943 CCDC61Q9Y6R9 512 aa11.21□□□□□ -0.61
USP40-216ENST00000485943 ADAMTS2O95450 1211 aa11.2□□□□□ -0.62
USP40-216ENST00000485943 TMF1P82094 1093 aa11.2□□□□□ -0.62
USP40-216ENST00000485943 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.2□□□□□ -0.62
USP40-216ENST00000485943 COL16A1Q07092 1604 aaPredicted RBP11.2□□□□□ -0.62
USP40-216ENST00000485943 MED1Q15648 1581 aaPredicted RBP11.2□□□□□ -0.62
USP40-216ENST00000485943 ATAD2Q6PL18 1390 aa11.19□□□□□ -0.62
USP40-216ENST00000485943 HDGFL2Q7Z4V5 671 aaPredicted RBP11.19□□□□□ -0.62
USP40-216ENST00000485943 C8orf37Q96NL8 207 aa11.19□□□□□ -0.62
USP40-216ENST00000485943 PPIP5K1Q6PFW1 1433 aa11.18□□□□□ -0.62
USP40-216ENST00000485943 ARHGEF10O15013 1369 aa11.18□□□□□ -0.62
USP40-216ENST00000485943 USP47Q96K76 1375 aa11.18□□□□□ -0.62
USP40-216ENST00000485943 SHPRHQ149N8 1683 aa11.18□□□□□ -0.62
USP40-216ENST00000485943 NGLY1Q96IV0 654 aa11.18□□□□□ -0.62
USP40-216ENST00000485943 SOS2Q07890 1332 aaPredicted RBP11.17□□□□□ -0.62
USP40-216ENST00000485943 ST20-MTHFSA0A0A6YYL1 179 aa11.17□□□□□ -0.62
USP40-216ENST00000485943 EIF4G2P78344 907 aaKnown RBP eCLIP11.17□□□□□ -0.62
USP40-216ENST00000485943 DCAF8Q5TAQ9 597 aa11.17□□□□□ -0.62
USP40-216ENST00000485943 RASEFQ8IZ41 740 aa11.17□□□□□ -0.62
USP40-216ENST00000485943 ZBTB7CA1YPR0 619 aa11.16□□□□□ -0.62
USP40-216ENST00000485943 ZNF772Q68DY9 489 aaPredicted RBP11.16□□□□□ -0.62
USP40-216ENST00000485943 ABTB2Q8N961 1025 aa11.16□□□□□ -0.62
USP40-216ENST00000485943 TERF2IPQ9NYB0 399 aa11.16□□□□□ -0.62
USP40-216ENST00000485943 CABP1Q9NZU7 370 aa11.16□□□□□ -0.62
USP40-216ENST00000485943 TNS3Q68CZ2 1445 aa11.16□□□□□ -0.62
USP40-216ENST00000485943 PNPLA6Q8IY17 1366 aa11.16□□□□□ -0.62
USP40-216ENST00000485943 ACEP12821 1306 aa11.15□□□□□ -0.62
USP40-216ENST00000485943 PAXIP1Q6ZW49 1069 aaPredicted RBP11.15□□□□□ -0.62
USP40-216ENST00000485943 FAM212AQ96EL1 285 aa11.15□□□□□ -0.62
USP40-216ENST00000485943 CCDC9Q9Y3X0 531 aaKnown RBP11.15□□□□□ -0.62
USP40-216ENST00000485943 SPATA31A3Q5VYP0 1347 aa11.14□□□□□ -0.63
USP40-216ENST00000485943 ATP7BP35670 1465 aa11.14□□□□□ -0.63
USP40-216ENST00000485943 HS6ST3Q8IZP7 471 aa11.14□□□□□ -0.63
USP40-216ENST00000485943 SBNO1A3KN83 1393 aa11.14□□□□□ -0.63
USP40-216ENST00000485943 PRR36Q9H6K5 1346 aa11.13□□□□□ -0.63
USP40-216ENST00000485943 A0A0G2JS52 829 aa11.13□□□□□ -0.63
USP40-216ENST00000485943 MYT1Q01538 1121 aa11.13□□□□□ -0.63
USP40-216ENST00000485943 NUTM2GQ5VZR2 741 aa11.13□□□□□ -0.63
USP40-216ENST00000485943 NLRP13Q86W25 1043 aa11.13□□□□□ -0.63
USP40-216ENST00000485943 USP32Q8NFA0 1604 aa11.13□□□□□ -0.63
USP40-216ENST00000485943 KTN1Q86UP2 1357 aaKnown RBP11.12□□□□□ -0.63
USP40-216ENST00000485943 SBNO2Q9Y2G9 1366 aa11.12□□□□□ -0.63
USP40-216ENST00000485943 PXDNQ92626 1479 aa11.12□□□□□ -0.63
USP40-216ENST00000485943 AFF2P51816 1311 aa11.11□□□□□ -0.63
USP40-216ENST00000485943 PLEKHG3A1L390 1219 aa11.11□□□□□ -0.63
USP40-216ENST00000485943 VSIG10Q8N0Z9 540 aa11.11□□□□□ -0.63
USP40-216ENST00000485943 CFAP44Q96MT7 982 aa11.11□□□□□ -0.63
USP40-216ENST00000485943 RIOK3O14730 519 aaKnown RBP11.1□□□□□ -0.63
USP40-216ENST00000485943 SOX12O15370 315 aa11.1□□□□□ -0.63
USP40-216ENST00000485943 NLRP6P59044 892 aa11.1□□□□□ -0.63
USP40-216ENST00000485943 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.1□□□□□ -0.633e-6■■■□□ 18.1
USP40-216ENST00000485943 CABLES1Q8TDN4 633 aa11.1□□□□□ -0.63
USP40-216ENST00000485943 PRDM11Q9NQV5 511 aa11.1□□□□□ -0.63
USP40-216ENST00000485943 USP21Q9UK80 565 aa11.1□□□□□ -0.63
USP40-216ENST00000485943 TOPAZ1Q8N9V7 1692 aa11.1□□□□□ -0.63
USP40-216ENST00000485943 BRD4O60885 1362 aaPredicted RBP11.09□□□□□ -0.63
USP40-216ENST00000485943 NINLQ9Y2I6 1382 aa11.09□□□□□ -0.63
USP40-216ENST00000485943 CHRM1P11229 460 aaPredicted RBP11.09□□□□□ -0.63
USP40-216ENST00000485943 EVA1CP58658 441 aa11.09□□□□□ -0.63
USP40-216ENST00000485943 HSPA5P11021 654 aaKnown RBP11.08□□□□□ -0.64
USP40-216ENST00000485943 RXRBP28702 533 aa11.08□□□□□ -0.64
USP40-216ENST00000485943 SPRYD3Q8NCJ5 442 aa11.08□□□□□ -0.64
USP40-216ENST00000485943 TRPC5Q9UL62 973 aaPredicted RBP11.08□□□□□ -0.64
USP40-216ENST00000485943 POLR3AO14802 1390 aaPredicted RBP11.07□□□□□ -0.64
USP40-216ENST00000485943 COL22A1Q8NFW1 1626 aaPredicted RBP11.07□□□□□ -0.64
USP40-216ENST00000485943 ZC3H6P61129 1189 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms