RNA–Protein interactions for RNA: ENST00000485749.1

RTN4-213, Transcript of reticulon 4, humanhuman

TSL 2

Gene RTN4, Length 832 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-213ENST00000485749 TRAK2O60296 914 aa7.08□□□□□ -1.28
RTN4-213ENST00000485749 SPDYE5A6NIY4 337 aa7.07□□□□□ -1.28
RTN4-213ENST00000485749 ARID3CA6NKF2 412 aa7.07□□□□□ -1.28
RTN4-213ENST00000485749 C6orf229H3BNL8 230 aa7.07□□□□□ -1.28
RTN4-213ENST00000485749 TERTO14746 1132 aaKnown RBP7.07□□□□□ -1.28
RTN4-213ENST00000485749 CCNYL3P0C7X3 344 aa7.07□□□□□ -1.28
RTN4-213ENST00000485749 FDX1P10109 184 aa7.07□□□□□ -1.28
RTN4-213ENST00000485749 MS4A1P11836 297 aa7.07□□□□□ -1.28
RTN4-213ENST00000485749 NFX1Q12986 1120 aaKnown RBP7.07□□□□□ -1.28
RTN4-213ENST00000485749 DIXDC1Q155Q3 683 aa7.07□□□□□ -1.28
RTN4-213ENST00000485749 HPS1Q92902 700 aa7.07□□□□□ -1.28
RTN4-213ENST00000485749 PCMTD1Q96MG8 357 aaPredicted RBP7.07□□□□□ -1.28
RTN4-213ENST00000485749 CCDC9Q9Y3X0 531 aaKnown RBP7.07□□□□□ -1.28
RTN4-213ENST00000485749 TTLL12Q14166 644 aaPredicted RBP7.06□□□□□ -1.28
RTN4-213ENST00000485749 PTPRNQ16849 979 aa7.06□□□□□ -1.28
RTN4-213ENST00000485749 SKOR1P84550 965 aa7.05□□□□□ -1.28
RTN4-213ENST00000485749 NPAS3Q8IXF0 933 aa7.05□□□□□ -1.28
RTN4-213ENST00000485749 HLA-CQ95604 372 aa7.05□□□□□ -1.28
RTN4-213ENST00000485749 GUCA2AQ02747 115 aa7.04□□□□□ -1.28
RTN4-213ENST00000485749 CAPN5O15484 640 aaPredicted RBP7.03□□□□□ -1.28
RTN4-213ENST00000485749 SNRPBP14678 240 aaKnown RBP7.03□□□□□ -1.28
RTN4-213ENST00000485749 SSTR3P32745 418 aaPredicted RBP7.03□□□□□ -1.28
RTN4-213ENST00000485749 DESI1Q6ICB0 168 aa7.03□□□□□ -1.28
RTN4-213ENST00000485749 HMGB1P09429 215 aaKnown RBP7.02□□□□□ -1.29
RTN4-213ENST00000485749 MTMR2Q13614 643 aa7.02□□□□□ -1.29
RTN4-213ENST00000485749 CCDC82Q8N4S0 544 aa7.02□□□□□ -1.29
RTN4-213ENST00000485749 SYMPKQ92797 1274 aaKnown RBP7.02□□□□□ -1.29
RTN4-213ENST00000485749 EVA1BQ9NVM1 165 aa7.02□□□□□ -1.29
RTN4-213ENST00000485749 NXF1Q9UBU9 619 aaKnown RBP7.02□□□□□ -1.29
RTN4-213ENST00000485749 SIAH2O43255 324 aa7.01□□□□□ -1.29
RTN4-213ENST00000485749 VARSP26640 1264 aaKnown RBP7.01□□□□□ -1.29
RTN4-213ENST00000485749 SH3D19Q5HYK7 790 aa7.01□□□□□ -1.29
RTN4-213ENST00000485749 GIGYF2Q6Y7W6 1299 aaKnown RBP7.01□□□□□ -1.29
RTN4-213ENST00000485749 MPNDQ8N594 471 aa7.01□□□□□ -1.29
RTN4-213ENST00000485749 UNC93B1Q9H1C4 597 aa7.01□□□□□ -1.29
RTN4-213ENST00000485749 GJA5P36382 358 aa7□□□□□ -1.29
RTN4-213ENST00000485749 SH3BP2P78314 561 aa7□□□□□ -1.29
RTN4-213ENST00000485749 KCNH2Q12809 1159 aa7□□□□□ -1.29
RTN4-213ENST00000485749 MCM6Q14566 821 aa7□□□□□ -1.29
RTN4-213ENST00000485749 IRF7Q92985 503 aa7□□□□□ -1.29
RTN4-213ENST00000485749 TRAIPQ9BWF2 469 aa7□□□□□ -1.29
RTN4-213ENST00000485749 SCARF1Q14162 830 aa6.99□□□□□ -1.29
RTN4-213ENST00000485749 KCTD17Q8N5Z5 321 aa6.99□□□□□ -1.29
RTN4-213ENST00000485749 PRR7Q8TB68 274 aa6.99□□□□□ -1.29
RTN4-213ENST00000485749 SPIRE2Q8WWL2 714 aa6.99□□□□□ -1.29
RTN4-213ENST00000485749 CLUAP1Q96AJ1 413 aa6.99□□□□□ -1.29
RTN4-213ENST00000485749 SERPINA10Q9UK55 444 aa6.99□□□□□ -1.29
RTN4-213ENST00000485749 SKIV2LQ15477 1246 aaKnown RBP6.98□□□□□ -1.29
RTN4-213ENST00000485749 PTCRAQ6ISU1 281 aaPredicted RBP6.98□□□□□ -1.29
RTN4-213ENST00000485749 CDK11BP21127 795 aaKnown RBP6.97□□□□□ -1.29
RTN4-213ENST00000485749 FNBP4Q8N3X1 1017 aaPredicted RBP6.97□□□□□ -1.29
RTN4-213ENST00000485749 ZNF511Q8NB15 262 aa6.97□□□□□ -1.29
RTN4-213ENST00000485749 FAM174AQ8TBP5 190 aa6.97□□□□□ -1.29
RTN4-213ENST00000485749 PCDHGC3Q9UN70 934 aa6.97□□□□□ -1.29
RTN4-213ENST00000485749 CDK11AQ9UQ88 783 aaPredicted RBP6.97□□□□□ -1.29
RTN4-213ENST00000485749 PROSER2Q86WR7 435 aaPredicted RBP6.96□□□□□ -1.3
RTN4-213ENST00000485749 BAP1Q92560 729 aa6.96□□□□□ -1.3
RTN4-213ENST00000485749 MOXD2PA6NHM9 499 aa6.95□□□□□ -1.3
RTN4-213ENST00000485749 RAD21O60216 631 aa6.95□□□□□ -1.3
RTN4-213ENST00000485749 ADH1CP00326 375 aa6.95□□□□□ -1.3
RTN4-213ENST00000485749 CTHP32929 405 aa6.95□□□□□ -1.3
RTN4-213ENST00000485749 LINC01559Q495D7 138 aa6.95□□□□□ -1.3
RTN4-213ENST00000485749 BEGAINQ9BUH8 593 aa6.95□□□□□ -1.3
RTN4-213ENST00000485749 BMP1P13497 986 aa6.94□□□□□ -1.3
RTN4-213ENST00000485749 NDUFV2P19404 249 aa6.94□□□□□ -1.3
RTN4-213ENST00000485749 NNTQ13423 1086 aa6.94□□□□□ -1.3
RTN4-213ENST00000485749 CCDC97Q96F63 343 aaPredicted RBP6.94□□□□□ -1.3
RTN4-213ENST00000485749 ZBTB3Q9H5J0 574 aa6.94□□□□□ -1.3
RTN4-213ENST00000485749 SHROOM4Q9ULL8 1493 aa6.93□□□□□ -1.3
RTN4-213ENST00000485749 PRPF38BQ5VTL8 546 aaKnown RBP6.93□□□□□ -1.3
RTN4-213ENST00000485749 LYPD8Q6UX82 237 aa6.93□□□□□ -1.3
RTN4-213ENST00000485749 TRIM46Q7Z4K8 759 aa6.93□□□□□ -1.3
RTN4-213ENST00000485749 ARMC2Q8NEN0 867 aa6.93□□□□□ -1.3
RTN4-213ENST00000485749 TLL2Q9Y6L7 1015 aa6.93□□□□□ -1.3
RTN4-213ENST00000485749 UPP2O95045 317 aa6.92□□□□□ -1.3
RTN4-213ENST00000485749 MRPL14Q6P1L8 145 aaKnown RBP6.92□□□□□ -1.3
RTN4-213ENST00000485749 ZSCAN1Q8NBB4 408 aa6.92□□□□□ -1.3
RTN4-213ENST00000485749 ZFP42Q96MM3 310 aa6.92□□□□□ -1.3
RTN4-213ENST00000485749 ZNF777Q9ULD5 760 aaPredicted RBP6.92□□□□□ -1.3
RTN4-213ENST00000485749 H3BM21 787 aa6.91□□□□□ -1.3
RTN4-213ENST00000485749 WDR4P57081 412 aaKnown RBP6.91□□□□□ -1.3
RTN4-213ENST00000485749 NR5A1Q13285 461 aa6.91□□□□□ -1.3
RTN4-213ENST00000485749 AGERQ15109 404 aa6.91□□□□□ -1.3
RTN4-213ENST00000485749 RSBN1LQ6PCB5 846 aaPredicted RBP6.91□□□□□ -1.3
RTN4-213ENST00000485749 BPHLQ86WA6 291 aaPredicted RBP6.91□□□□□ -1.3
RTN4-213ENST00000485749 BANK1Q8NDB2 785 aa6.91□□□□□ -1.3
RTN4-213ENST00000485749 TBC1D2Q9BYX2 928 aa6.91□□□□□ -1.3
RTN4-213ENST00000485749 LOC105371045A0A1W2PR82 267 aa6.9□□□□□ -1.3
RTN4-213ENST00000485749 PDE4CQ08493 712 aa6.9□□□□□ -1.3
RTN4-213ENST00000485749 CDK15Q96Q40 435 aa6.9□□□□□ -1.3
RTN4-213ENST00000485749 SPTLC1O15269 473 aa6.89□□□□□ -1.31
RTN4-213ENST00000485749 TIMP2P16035 220 aa6.89□□□□□ -1.31
RTN4-213ENST00000485749 GMPRP36959 345 aa6.89□□□□□ -1.31
RTN4-213ENST00000485749 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.89□□□□□ -1.31
RTN4-213ENST00000485749 PPP1R15AO75807 674 aaPredicted RBP6.88□□□□□ -1.31
RTN4-213ENST00000485749 ARID5BQ14865 1188 aa6.88□□□□□ -1.31
RTN4-213ENST00000485749 NBPF14Q5TI25 921 aa6.88□□□□□ -1.31
RTN4-213ENST00000485749 MAN1A2O60476 641 aa6.87□□□□□ -1.31
RTN4-213ENST00000485749 RIC3Q7Z5B4 369 aa6.87□□□□□ -1.31
RTN4-213ENST00000485749 HELBQ8NG08 1087 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms