RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 RGS17Q9UGC6 210 aaPredicted RBP22.31■■□□□ 1.16
UPF3A-208ENST00000484246 CD163L1Q9NR16 1453 aa22.3■■□□□ 1.16
UPF3A-208ENST00000484246 MEX3CQ5U5Q3 659 aaKnown RBP22.3■■□□□ 1.16
UPF3A-208ENST00000484246 ZNF692Q9BU19 519 aaPredicted RBP22.3■■□□□ 1.16
UPF3A-208ENST00000484246 EIF4G2P78344 907 aaKnown RBP eCLIP22.29■■□□□ 1.16
UPF3A-208ENST00000484246 CDCA8Q53HL2 280 aa22.28■■□□□ 1.16
UPF3A-208ENST00000484246 NRKQ7Z2Y5 1582 aa22.27■■□□□ 1.16
UPF3A-208ENST00000484246 ABCA3Q99758 1704 aa22.27■■□□□ 1.16
UPF3A-208ENST00000484246 CRYBG1Q9Y4K1 1723 aa22.26■■□□□ 1.15
UPF3A-208ENST00000484246 AKAP12Q02952 1782 aa22.25■■□□□ 1.15
UPF3A-208ENST00000484246 PAK3O75914 559 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-208ENST00000484246 USP19O94966 1318 aa22.25■■□□□ 1.15
UPF3A-208ENST00000484246 ADAMTS2O95450 1211 aa22.24■■□□□ 1.15
UPF3A-208ENST00000484246 ZNF772Q68DY9 489 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-208ENST00000484246 LMOD2Q6P5Q4 547 aa22.24■■□□□ 1.15
UPF3A-208ENST00000484246 FNBP4Q8N3X1 1017 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-208ENST00000484246 TTC21AQ8NDW8 1320 aa22.24■■□□□ 1.15
UPF3A-208ENST00000484246 MON2Q7Z3U7 1717 aa22.23■■□□□ 1.15
UPF3A-208ENST00000484246 HSPA5P11021 654 aaKnown RBP22.23■■□□□ 1.15
UPF3A-208ENST00000484246 C8orf37Q96NL8 207 aa22.23■■□□□ 1.15
UPF3A-208ENST00000484246 SLC12A5Q9H2X9 1139 aa22.23■■□□□ 1.15
UPF3A-208ENST00000484246 AFF2P51816 1311 aa22.23■■□□□ 1.15
UPF3A-208ENST00000484246 KTN1Q86UP2 1357 aaKnown RBP22.23■■□□□ 1.15
UPF3A-208ENST00000484246 TERF2IPQ9NYB0 399 aa22.22■■□□□ 1.15
UPF3A-208ENST00000484246 TTC21BQ7Z4L5 1316 aa22.22■■□□□ 1.15
UPF3A-208ENST00000484246 A0A1W2PP64 1363 aa22.22■■□□□ 1.15
UPF3A-208ENST00000484246 EDC4Q6P2E9 1401 aaKnown RBP22.22■■□□□ 1.15
UPF3A-208ENST00000484246 SLIT2O94813 1529 aa22.21■■□□□ 1.15
UPF3A-208ENST00000484246 CABLES1Q8TDN4 633 aa22.21■■□□□ 1.15
UPF3A-208ENST00000484246 ANKRD36BQ8N2N9 1353 aa22.21■■□□□ 1.15
UPF3A-208ENST00000484246 HDGFL2Q7Z4V5 671 aaPredicted RBP22.2■■□□□ 1.14
UPF3A-208ENST00000484246 ABTB2Q8N961 1025 aa22.2■■□□□ 1.14
UPF3A-208ENST00000484246 TMC1Q8TDI8 760 aa22.2■■□□□ 1.14
UPF3A-208ENST00000484246 MARF1Q9Y4F3 1742 aaKnown RBP22.2■■□□□ 1.14
UPF3A-208ENST00000484246 POTEAQ6S8J7 498 aa22.19■■□□□ 1.14
UPF3A-208ENST00000484246 SLIT3O75094 1523 aa22.19■■□□□ 1.14
UPF3A-208ENST00000484246 PHRF1Q9P1Y6 1649 aaKnown RBP22.19■■□□□ 1.14
UPF3A-208ENST00000484246 PIK3C2AO00443 1686 aa22.19■■□□□ 1.14
UPF3A-208ENST00000484246 HAP1P54257 671 aaPredicted RBP22.18■■□□□ 1.14
UPF3A-208ENST00000484246 NLRP13Q86W25 1043 aa22.18■■□□□ 1.14
UPF3A-208ENST00000484246 NGLY1Q96IV0 654 aa22.18■■□□□ 1.14
UPF3A-208ENST00000484246 BCL9LQ86UU0 1499 aa22.17■■□□□ 1.14
UPF3A-208ENST00000484246 USP31Q70CQ4 1352 aa22.17■■□□□ 1.14
UPF3A-208ENST00000484246 CPDO75976 1380 aa22.16■■□□□ 1.14
UPF3A-208ENST00000484246 USP54Q70EL1 1684 aa22.15■■□□□ 1.14
UPF3A-208ENST00000484246 ATRNO75882 1429 aa22.14■■□□□ 1.14
UPF3A-208ENST00000484246 MYOM1P52179 1685 aa22.14■■□□□ 1.13
UPF3A-208ENST00000484246 USP21Q9UK80 565 aa22.13■■□□□ 1.13
UPF3A-208ENST00000484246 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.13■■□□□ 1.13
UPF3A-208ENST00000484246 CDK12Q9NYV4 1490 aaPredicted RBP22.12■■□□□ 1.13
UPF3A-208ENST00000484246 NLRP6P59044 892 aa22.12■■□□□ 1.13
UPF3A-208ENST00000484246 NUTM2GQ5VZR2 741 aa22.12■■□□□ 1.13
UPF3A-208ENST00000484246 COL14A1Q05707 1796 aaKnown RBP22.12■■□□□ 1.13
UPF3A-208ENST00000484246 KIAA0232Q92628 1395 aa22.12■■□□□ 1.13
UPF3A-208ENST00000484246 NWD2Q9ULI1 1742 aa22.11■■□□□ 1.13
UPF3A-208ENST00000484246 GCP02774 474 aa22.11■■□□□ 1.13
UPF3A-208ENST00000484246 OVOS2A0A0J9YW53 1432 aa22.11■■□□□ 1.13
UPF3A-208ENST00000484246 OVOS2Q6IE36 1432 aa22.11■■□□□ 1.13
UPF3A-208ENST00000484246 FAM83GA6ND36 823 aa22.1■■□□□ 1.13
UPF3A-208ENST00000484246 UNC5CLQ8IV45 518 aa22.1■■□□□ 1.13
UPF3A-208ENST00000484246 TRPC5Q9UL62 973 aaPredicted RBP22.1■■□□□ 1.13
UPF3A-208ENST00000484246 PRDM11Q9NQV5 511 aa22.09■■□□□ 1.13
UPF3A-208ENST00000484246 PLCH1Q4KWH8 1693 aa22.09■■□□□ 1.13
UPF3A-208ENST00000484246 NFAT5O94916 1531 aa22.08■■□□□ 1.13
UPF3A-208ENST00000484246 PLEKHG5O94827 1062 aa22.07■■□□□ 1.12
UPF3A-208ENST00000484246 NME9Q86XW9 330 aa22.07■■□□□ 1.12
UPF3A-208ENST00000484246 KCNH5Q8NCM2 988 aa22.07■■□□□ 1.12
UPF3A-208ENST00000484246 QTRT2Q9H974 415 aaKnown RBP22.07■■□□□ 1.12
UPF3A-208ENST00000484246 NRAPQ86VF7 1730 aa22.06■■□□□ 1.12
UPF3A-208ENST00000484246 RBM6P78332 1123 aaKnown RBP22.06■■□□□ 1.12
UPF3A-208ENST00000484246 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.06■■□□□ 1.12
UPF3A-208ENST00000484246 ABCC6O95255 1503 aa22.06■■□□□ 1.12
UPF3A-208ENST00000484246 LMO7Q8WWI1 1683 aa22.05■■□□□ 1.12
UPF3A-208ENST00000484246 RXRBP28702 533 aa22.05■■□□□ 1.12
UPF3A-208ENST00000484246 AATKQ6ZMQ8 1374 aa22.04■■□□□ 1.12
UPF3A-208ENST00000484246 C11orf95C9JLR9 678 aaPredicted RBP22.04■■□□□ 1.12
UPF3A-208ENST00000484246 VPS72Q15906 364 aa22.04■■□□□ 1.12
UPF3A-208ENST00000484246 ZC3H6P61129 1189 aaKnown RBP22.03■■□□□ 1.12
UPF3A-208ENST00000484246 KIF7Q2M1P5 1343 aa22.03■■□□□ 1.12
UPF3A-208ENST00000484246 ARHGEF25Q86VW2 580 aa22.02■■□□□ 1.12
UPF3A-208ENST00000484246 CARD14Q9BXL6 1004 aa22.02■■□□□ 1.12
UPF3A-208ENST00000484246 BTG4Q9NY30 223 aa22.02■■□□□ 1.12
UPF3A-208ENST00000484246 NSD3Q9BZ95 1437 aa22.02■■□□□ 1.12
UPF3A-208ENST00000484246 GJD4Q96KN9 370 aaPredicted RBP22.01■■□□□ 1.11
UPF3A-208ENST00000484246 ZRANB1Q9UGI0 708 aa22.01■■□□□ 1.11
UPF3A-208ENST00000484246 CHRNA2Q15822 529 aa22■■□□□ 1.11
UPF3A-208ENST00000484246 CAMTA1Q9Y6Y1 1673 aa22■■□□□ 1.11
UPF3A-208ENST00000484246 GLI3P10071 1580 aa21.99■■□□□ 1.11
UPF3A-208ENST00000484246 RGS12O14924 1447 aa21.99■■□□□ 1.11
UPF3A-208ENST00000484246 COL5A2P05997 1499 aaPredicted RBP21.98■■□□□ 1.11
UPF3A-208ENST00000484246 FYB1O15117 783 aa21.98■■□□□ 1.11
UPF3A-208ENST00000484246 COG3Q96JB2 828 aa21.97■■□□□ 1.11
UPF3A-208ENST00000484246 POLR3GLQ9BT43 218 aa21.96■■□□□ 1.11
UPF3A-208ENST00000484246 CCDC7Q96M83 1385 aa21.96■■□□□ 1.11
UPF3A-208ENST00000484246 COL18A1P39060 1754 aa21.95■■□□□ 1.1
UPF3A-208ENST00000484246 SPATA31A5Q5VU36 1347 aa21.95■■□□□ 1.1
UPF3A-208ENST00000484246 SPATA31A7Q8IWB4 1347 aa21.95■■□□□ 1.1
UPF3A-208ENST00000484246 CGNL1Q0VF96 1302 aa21.94■■□□□ 1.1
UPF3A-208ENST00000484246 ONECUT3O60422 494 aaPredicted RBP21.93■■□□□ 1.1
UPF3A-208ENST00000484246 PANK3Q9H999 370 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms