RNA–Protein interactions for RNA: ENST00000482647.5

SEC13-217, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-217ENST00000482647 SLC12A5Q9H2X9 1139 aa29.21■■■□□ 2.27
SEC13-217ENST00000482647 TRPM3Q9HCF6 1732 aaPredicted RBP29.2■■■□□ 2.27
SEC13-217ENST00000482647 ABTB2Q8N961 1025 aa29.2■■■□□ 2.26
SEC13-217ENST00000482647 CABLES1Q8TDN4 633 aa29.2■■■□□ 2.26
SEC13-217ENST00000482647 C8orf37Q96NL8 207 aa29.2■■■□□ 2.26
SEC13-217ENST00000482647 USP6P35125 1406 aa29.2■■■□□ 2.26
SEC13-217ENST00000482647 TERF2IPQ9NYB0 399 aa29.19■■■□□ 2.26
SEC13-217ENST00000482647 NINLQ9Y2I6 1382 aa29.18■■■□□ 2.26
SEC13-217ENST00000482647 HDGFL2Q7Z4V5 671 aaPredicted RBP29.18■■■□□ 2.26
SEC13-217ENST00000482647 NGLY1Q96IV0 654 aa29.18■■■□□ 2.26
SEC13-217ENST00000482647 RGS17Q9UGC6 210 aaPredicted RBP29.18■■■□□ 2.26
SEC13-217ENST00000482647 CPSF1Q10570 1443 aaKnown RBP29.17■■■□□ 2.26
SEC13-217ENST00000482647 KTN1Q86UP2 1357 aaKnown RBP29.16■■■□□ 2.26
SEC13-217ENST00000482647 NUTM2GQ5VZR2 741 aa29.15■■■□□ 2.26
SEC13-217ENST00000482647 ZNF772Q68DY9 489 aaPredicted RBP29.15■■■□□ 2.26
SEC13-217ENST00000482647 SSH2Q76I76 1423 aa29.13■■■□□ 2.25
SEC13-217ENST00000482647 ALS2Q96Q42 1657 aa29.13■■■□□ 2.25
SEC13-217ENST00000482647 AFF2P51816 1311 aa29.13■■■□□ 2.25
SEC13-217ENST00000482647 TTC21BQ7Z4L5 1316 aa29.13■■■□□ 2.25
SEC13-217ENST00000482647 NLRP13Q86W25 1043 aa29.12■■■□□ 2.25
SEC13-217ENST00000482647 TTC21AQ8NDW8 1320 aa29.1■■■□□ 2.25
SEC13-217ENST00000482647 CD163L1Q9NR16 1453 aa29.1■■■□□ 2.25
SEC13-217ENST00000482647 NLRP6P59044 892 aa29.09■■■□□ 2.25
SEC13-217ENST00000482647 FNBP4Q8N3X1 1017 aaPredicted RBP29.08■■■□□ 2.25
SEC13-217ENST00000482647 A0A1W2PP64 1363 aa29.07■■■□□ 2.24
SEC13-217ENST00000482647 POTEAQ6S8J7 498 aa29.06■■■□□ 2.24
SEC13-217ENST00000482647 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.06■■■□□ 2.24
SEC13-217ENST00000482647 POLR3GLQ9BT43 218 aa29.05■■■□□ 2.24
SEC13-217ENST00000482647 USP21Q9UK80 565 aa29.05■■■□□ 2.24
SEC13-217ENST00000482647 AKAP12Q02952 1782 aa29.03■■■□□ 2.24
SEC13-217ENST00000482647 ANKRD36BQ8N2N9 1353 aa29.03■■■□□ 2.24
SEC13-217ENST00000482647 USP19O94966 1318 aa29.03■■■□□ 2.24
SEC13-217ENST00000482647 FAM83GA6ND36 823 aa29.03■■■□□ 2.24
SEC13-217ENST00000482647 EDC4Q6P2E9 1401 aaKnown RBP29.03■■■□□ 2.24
SEC13-217ENST00000482647 ILDR2Q71H61 639 aa29.01■■■□□ 2.23
SEC13-217ENST00000482647 GCP02774 474 aa29■■■□□ 2.23
SEC13-217ENST00000482647 QTRT2Q9H974 415 aaKnown RBP29■■■□□ 2.23
SEC13-217ENST00000482647 PRDM11Q9NQV5 511 aa28.99■■■□□ 2.23
SEC13-217ENST00000482647 ZC3H6P61129 1189 aaKnown RBP28.98■■■□□ 2.23
SEC13-217ENST00000482647 NME9Q86XW9 330 aa28.98■■■□□ 2.23
SEC13-217ENST00000482647 C11orf95C9JLR9 678 aaPredicted RBP28.97■■■□□ 2.23
SEC13-217ENST00000482647 UNC5CLQ8IV45 518 aa28.97■■■□□ 2.23
SEC13-217ENST00000482647 TRPC5Q9UL62 973 aaPredicted RBP28.97■■■□□ 2.23
SEC13-217ENST00000482647 KIAA0232Q92628 1395 aa28.97■■■□□ 2.23
SEC13-217ENST00000482647 MON2Q7Z3U7 1717 aa28.97■■■□□ 2.23
SEC13-217ENST00000482647 ABCA3Q99758 1704 aa28.96■■■□□ 2.23
SEC13-217ENST00000482647 BCL9LQ86UU0 1499 aa28.96■■■□□ 2.23
SEC13-217ENST00000482647 RXRBP28702 533 aa28.95■■■□□ 2.22
SEC13-217ENST00000482647 KCNH5Q8NCM2 988 aa28.95■■■□□ 2.22
SEC13-217ENST00000482647 USP31Q70CQ4 1352 aa28.95■■■□□ 2.22
SEC13-217ENST00000482647 SLIT2O94813 1529 aa28.94■■■□□ 2.22
SEC13-217ENST00000482647 MARF1Q9Y4F3 1742 aaKnown RBP28.94■■■□□ 2.22
SEC13-217ENST00000482647 NRKQ7Z2Y5 1582 aa28.94■■■□□ 2.22
SEC13-217ENST00000482647 ZRANB1Q9UGI0 708 aa28.94■■■□□ 2.22
SEC13-217ENST00000482647 PIK3C2AO00443 1686 aa28.93■■■□□ 2.22
SEC13-217ENST00000482647 BTG4Q9NY30 223 aa28.93■■■□□ 2.22
SEC13-217ENST00000482647 CRYBG1Q9Y4K1 1723 aa28.92■■■□□ 2.22
SEC13-217ENST00000482647 CPDO75976 1380 aa28.92■■■□□ 2.22
SEC13-217ENST00000482647 RBM6P78332 1123 aaKnown RBP28.91■■■□□ 2.22
SEC13-217ENST00000482647 CHRNA2Q15822 529 aa28.91■■■□□ 2.22
SEC13-217ENST00000482647 CARD14Q9BXL6 1004 aa28.9■■■□□ 2.22
SEC13-217ENST00000482647 PHRF1Q9P1Y6 1649 aaKnown RBP28.9■■■□□ 2.22
SEC13-217ENST00000482647 SOX12O15370 315 aa28.89■■■□□ 2.22
SEC13-217ENST00000482647 KIF7Q2M1P5 1343 aa28.89■■■□□ 2.21
SEC13-217ENST00000482647 SLIT3O75094 1523 aa28.89■■■□□ 2.21
SEC13-217ENST00000482647 ATRNO75882 1429 aa28.88■■■□□ 2.21
SEC13-217ENST00000482647 ZEB1P37275 1124 aaPredicted RBP28.88■■■□□ 2.21
SEC13-217ENST00000482647 COG3Q96JB2 828 aa28.88■■■□□ 2.21
SEC13-217ENST00000482647 ZBTB7CA1YPR0 619 aa28.86■■■□□ 2.21
SEC13-217ENST00000482647 FYB1O15117 783 aa28.86■■■□□ 2.21
SEC13-217ENST00000482647 VPS72Q15906 364 aa28.86■■■□□ 2.21
SEC13-217ENST00000482647 PANK3Q9H999 370 aa28.86■■■□□ 2.21
SEC13-217ENST00000482647 COL14A1Q05707 1796 aaKnown RBP28.85■■■□□ 2.21
SEC13-217ENST00000482647 GJD4Q96KN9 370 aaPredicted RBP28.85■■■□□ 2.21
SEC13-217ENST00000482647 MYOM1P52179 1685 aa28.84■■■□□ 2.21
SEC13-217ENST00000482647 ARHGEF25Q86VW2 580 aa28.84■■■□□ 2.21
SEC13-217ENST00000482647 CCDC9Q9Y3X0 531 aaKnown RBP28.83■■■□□ 2.21
SEC13-217ENST00000482647 NSD3Q9BZ95 1437 aa28.83■■■□□ 2.21
SEC13-217ENST00000482647 EVA1CP58658 441 aa28.82■■■□□ 2.2
SEC13-217ENST00000482647 AATKQ6ZMQ8 1374 aa28.82■■■□□ 2.2
SEC13-217ENST00000482647 OVOS2A0A0J9YW53 1432 aa28.81■■■□□ 2.2
SEC13-217ENST00000482647 OVOS2Q6IE36 1432 aa28.81■■■□□ 2.2
SEC13-217ENST00000482647 GGNBP2Q9H3C7 697 aa28.81■■■□□ 2.2
SEC13-217ENST00000482647 NWD2Q9ULI1 1742 aa28.8■■■□□ 2.2
SEC13-217ENST00000482647 CGNL1Q0VF96 1302 aa28.8■■■□□ 2.2
SEC13-217ENST00000482647 STRN4Q9NRL3 753 aa28.8■■■□□ 2.2
SEC13-217ENST00000482647 PLCH1Q4KWH8 1693 aa28.8■■■□□ 2.2
SEC13-217ENST00000482647 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.77■■■□□ 2.2
SEC13-217ENST00000482647 CCDC7Q96M83 1385 aa28.77■■■□□ 2.2
SEC13-217ENST00000482647 WASHC2AQ641Q2 1341 aa28.77■■■□□ 2.2
SEC13-217ENST00000482647 NFAT5O94916 1531 aa28.76■■■□□ 2.19
SEC13-217ENST00000482647 CDK12Q9NYV4 1490 aaPredicted RBP28.76■■■□□ 2.19
SEC13-217ENST00000482647 USP54Q70EL1 1684 aa28.75■■■□□ 2.19
SEC13-217ENST00000482647 CAMTA1Q9Y6Y1 1673 aa28.74■■■□□ 2.19
SEC13-217ENST00000482647 AXIN2Q9Y2T1 843 aa28.74■■■□□ 2.19
SEC13-217ENST00000482647 SPATA31A5Q5VU36 1347 aa28.73■■■□□ 2.19
SEC13-217ENST00000482647 SPATA31A7Q8IWB4 1347 aa28.73■■■□□ 2.19
SEC13-217ENST00000482647 KNSTRNQ9Y448 316 aa28.72■■■□□ 2.19
SEC13-217ENST00000482647 LARP1Q6PKG0 1096 aaKnown RBP28.71■■■□□ 2.19
SEC13-217ENST00000482647 NRAPQ86VF7 1730 aa28.7■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms