RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 MED14O60244 1454 aa18.98■□□□□ 0.63
CHD3-211ENST00000481999 C20orf194Q5TEA3 1177 aa18.98■□□□□ 0.63
CHD3-211ENST00000481999 CCDC61Q9Y6R9 512 aa18.98■□□□□ 0.63
CHD3-211ENST00000481999 ARHGAP23Q9P227 1491 aa18.97■□□□□ 0.63
CHD3-211ENST00000481999 SLIT1O75093 1534 aa18.97■□□□□ 0.63
CHD3-211ENST00000481999 SLFN5Q08AF3 891 aa18.97■□□□□ 0.63
CHD3-211ENST00000481999 ATP7BP35670 1465 aa18.97■□□□□ 0.63
CHD3-211ENST00000481999 LMTK3Q96Q04 1460 aa18.97■□□□□ 0.63
CHD3-211ENST00000481999 CEP170BQ9Y4F5 1589 aaPredicted RBP18.97■□□□□ 0.63
CHD3-211ENST00000481999 WWC1Q8IX03 1113 aa18.97■□□□□ 0.63
CHD3-211ENST00000481999 CPSF1Q10570 1443 aaKnown RBP18.96■□□□□ 0.63
CHD3-211ENST00000481999 EMILIN1Q9Y6C2 1016 aa18.95■□□□□ 0.62
CHD3-211ENST00000481999 KIF20BQ96Q89 1820 aa18.95■□□□□ 0.62
CHD3-211ENST00000481999 RUNDC1Q96C34 613 aa18.95■□□□□ 0.62
CHD3-211ENST00000481999 ZNF142P52746 1687 aaPredicted RBP18.94■□□□□ 0.62
CHD3-211ENST00000481999 KCNA6P17658 529 aa18.94■□□□□ 0.62
CHD3-211ENST00000481999 HSPA2P54652 639 aa18.94■□□□□ 0.62
CHD3-211ENST00000481999 PMFBP1Q8TBY8 1022 aa18.94■□□□□ 0.62
CHD3-211ENST00000481999 RRS1Q15050 365 aaKnown RBP18.93■□□□□ 0.62
CHD3-211ENST00000481999 POLKQ9UBT6 870 aa18.93■□□□□ 0.62
CHD3-211ENST00000481999 ANKRD26Q9UPS8 1709 aa18.93■□□□□ 0.62
CHD3-211ENST00000481999 COL3A1P02461 1466 aaPredicted RBP18.93■□□□□ 0.62
CHD3-211ENST00000481999 SIRT1Q96EB6 747 aa18.92■□□□□ 0.62
CHD3-211ENST00000481999 NKTRP30414 1462 aaKnown RBP18.92■□□□□ 0.62
CHD3-211ENST00000481999 IQSEC2Q5JU85 1478 aa18.91■□□□□ 0.62
CHD3-211ENST00000481999 SOX12O15370 315 aa18.91■□□□□ 0.62
CHD3-211ENST00000481999 TBX22Q9Y458 520 aa18.91■□□□□ 0.62
CHD3-211ENST00000481999 ACEP12821 1306 aa18.91■□□□□ 0.62
CHD3-211ENST00000481999 ERICH6Q7L0X2 663 aa18.91■□□□□ 0.62
CHD3-211ENST00000481999 TRMT2AQ8IZ69 625 aaKnown RBP18.91■□□□□ 0.62
CHD3-211ENST00000481999 BCAR3O75815 825 aa18.9■□□□□ 0.62
CHD3-211ENST00000481999 CDC42BPGQ6DT37 1551 aa18.9■□□□□ 0.62
CHD3-211ENST00000481999 EDC4Q6P2E9 1401 aaKnown RBP18.89■□□□□ 0.62
CHD3-211ENST00000481999 MAP2P11137 1827 aaKnown RBP18.89■□□□□ 0.61
CHD3-211ENST00000481999 CRBNQ96SW2 442 aa18.89■□□□□ 0.61
CHD3-211ENST00000481999 DIAPH1O60610 1272 aaKnown RBP18.88■□□□□ 0.61
CHD3-211ENST00000481999 HMOX1P09601 288 aa18.88■□□□□ 0.61
CHD3-211ENST00000481999 PLEKHF1Q96S99 279 aa18.88■□□□□ 0.61
CHD3-211ENST00000481999 RGPD8O14715 1765 aaPredicted RBP18.87■□□□□ 0.61
CHD3-211ENST00000481999 E9PSI1 815 aa18.86■□□□□ 0.61
CHD3-211ENST00000481999 MON2Q7Z3U7 1717 aa18.85■□□□□ 0.61
CHD3-211ENST00000481999 PNPLA6Q8IY17 1366 aa18.85■□□□□ 0.61
CHD3-211ENST00000481999 COG3Q96JB2 828 aa18.84■□□□□ 0.61
CHD3-211ENST00000481999 ITSN1Q15811 1721 aa18.84■□□□□ 0.61
CHD3-211ENST00000481999 SKAP1Q86WV1 359 aa18.84■□□□□ 0.61
CHD3-211ENST00000481999 PHF23Q9BUL5 403 aaPredicted RBP18.84■□□□□ 0.61
CHD3-211ENST00000481999 AKAP12Q02952 1782 aa18.84■□□□□ 0.61
CHD3-211ENST00000481999 ADGRB2O60241 1585 aa18.83■□□□□ 0.61
CHD3-211ENST00000481999 BCL2L13Q9BXK5 485 aa18.83■□□□□ 0.6
CHD3-211ENST00000481999 TTC21BQ7Z4L5 1316 aa18.83■□□□□ 0.6
CHD3-211ENST00000481999 TSR2Q969E8 191 aaKnown RBP18.82■□□□□ 0.6
CHD3-211ENST00000481999 ANKLE2Q86XL3 938 aa18.82■□□□□ 0.6
CHD3-211ENST00000481999 TMPOP42166 694 aaKnown RBP18.81■□□□□ 0.6
CHD3-211ENST00000481999 PTCH1Q13635 1447 aa18.81■□□□□ 0.6
CHD3-211ENST00000481999 PRKAR2BP31323 418 aa18.81■□□□□ 0.6
CHD3-211ENST00000481999 PHACTR3Q96KR7 559 aa18.81■□□□□ 0.6
CHD3-211ENST00000481999 TRIM35Q9UPQ4 493 aa18.81■□□□□ 0.6
CHD3-211ENST00000481999 DIP2AQ14689 1571 aa18.81■□□□□ 0.6
CHD3-211ENST00000481999 NUTM2GQ5VZR2 741 aa18.8■□□□□ 0.6
CHD3-211ENST00000481999 TOPAZ1Q8N9V7 1692 aa18.8■□□□□ 0.6
CHD3-211ENST00000481999 ZNF692Q9BU19 519 aaPredicted RBP18.8■□□□□ 0.6
CHD3-211ENST00000481999 XRN1Q8IZH2 1706 aaKnown RBP18.8■□□□□ 0.6
CHD3-211ENST00000481999 USP6P35125 1406 aa18.79■□□□□ 0.6
CHD3-211ENST00000481999 MAPK8IP3Q9UPT6 1336 aa18.79■□□□□ 0.6
CHD3-211ENST00000481999 PLEKHG3A1L390 1219 aa18.79■□□□□ 0.6
CHD3-211ENST00000481999 LRRC7Q96NW7 1537 aa18.79■□□□□ 0.6
CHD3-211ENST00000481999 NGDNQ8NEJ9 315 aaKnown RBP18.79■□□□□ 0.6
CHD3-211ENST00000481999 RIPK4P57078 832 aa18.78■□□□□ 0.6
CHD3-211ENST00000481999 RSPH6AQ9H0K4 717 aa18.78■□□□□ 0.6
CHD3-211ENST00000481999 IL13P35225 146 aa18.77■□□□□ 0.6
CHD3-211ENST00000481999 THUMPD2Q9BTF0 503 aaKnown RBP18.77■□□□□ 0.6
CHD3-211ENST00000481999 TNNQ9UQP3 1299 aa18.77■□□□□ 0.6
CHD3-211ENST00000481999 NRKQ7Z2Y5 1582 aa18.77■□□□□ 0.6
CHD3-211ENST00000481999 STRCQ7RTU9 1775 aa18.76■□□□□ 0.59
CHD3-211ENST00000481999 FRAT1Q92837 279 aaPredicted RBP18.75■□□□□ 0.59
CHD3-211ENST00000481999 HSP90AB2PQ58FF8 381 aa18.75■□□□□ 0.59
CHD3-211ENST00000481999 AEBP1Q8IUX7 1158 aa18.75■□□□□ 0.59
CHD3-211ENST00000481999 CCDC27Q2M243 656 aa18.74■□□□□ 0.59
CHD3-211ENST00000481999 WDR63Q8IWG1 891 aa18.74■□□□□ 0.59
CHD3-211ENST00000481999 NGEFQ8N5V2 710 aa18.74■□□□□ 0.59
CHD3-211ENST00000481999 PLEKHG5O94827 1062 aa18.73■□□□□ 0.59
CHD3-211ENST00000481999 ANP32AP39687 249 aaKnown RBP18.73■□□□□ 0.59
CHD3-211ENST00000481999 OVOS2A0A0J9YW53 1432 aa18.73■□□□□ 0.59
CHD3-211ENST00000481999 OVOS2Q6IE36 1432 aa18.73■□□□□ 0.59
CHD3-211ENST00000481999 TCERG1O14776 1098 aaKnown RBP18.73■□□□□ 0.59
CHD3-211ENST00000481999 PANK1Q8TE04 598 aa18.73■□□□□ 0.59
CHD3-211ENST00000481999 NOP58Q9Y2X3 529 aaKnown RBP18.73■□□□□ 0.59
CHD3-211ENST00000481999 AATKQ6ZMQ8 1374 aa18.72■□□□□ 0.59
CHD3-211ENST00000481999 FCHSD2O94868 740 aa18.72■□□□□ 0.59
CHD3-211ENST00000481999 SSH2Q76I76 1423 aa18.72■□□□□ 0.59
CHD3-211ENST00000481999 CDK12Q9NYV4 1490 aaPredicted RBP18.72■□□□□ 0.59
CHD3-211ENST00000481999 RARSP54136 660 aaKnown RBP18.71■□□□□ 0.59
CHD3-211ENST00000481999 NALCNQ8IZF0 1738 aa18.71■□□□□ 0.59
CHD3-211ENST00000481999 PAK3O75914 559 aaPredicted RBP18.71■□□□□ 0.59
CHD3-211ENST00000481999 EIF4A2Q14240 407 aaKnown RBP18.7■□□□□ 0.58
CHD3-211ENST00000481999 LAS1LQ9Y4W2 734 aaKnown RBP18.7■□□□□ 0.58
CHD3-211ENST00000481999 CHD2O14647 1828 aaKnown RBP18.7■□□□□ 0.58
CHD3-211ENST00000481999 FAM83GA6ND36 823 aa18.7■□□□□ 0.58
CHD3-211ENST00000481999 EXOSC9Q06265 439 aaKnown RBP18.7■□□□□ 0.58
CHD3-211ENST00000481999 CLUAP1Q96AJ1 413 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms