RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ESCO1Q5FWF5 840 aa13.79□□□□□ -0.2
USP39-215ENST00000481409 RBM33Q96EV2 1170 aaKnown RBP13.79□□□□□ -0.2
USP39-215ENST00000481409 SSH2Q76I76 1423 aa13.79□□□□□ -0.2
USP39-215ENST00000481409 NUTM2FA1L443 756 aa13.77□□□□□ -0.21
USP39-215ENST00000481409 CACNB1Q02641 598 aaPredicted RBP13.77□□□□□ -0.21
USP39-215ENST00000481409 NLRP13Q86W25 1043 aa13.77□□□□□ -0.21
USP39-215ENST00000481409 NPHP3Q7Z494 1330 aa13.76□□□□□ -0.21
USP39-215ENST00000481409 TTC21BQ7Z4L5 1316 aa13.76□□□□□ -0.21
USP39-215ENST00000481409 FYB1O15117 783 aa13.76□□□□□ -0.21
USP39-215ENST00000481409 PSME1Q06323 249 aa13.76□□□□□ -0.21
USP39-215ENST00000481409 CC2D1BQ5T0F9 858 aaKnown RBP13.76□□□□□ -0.21
USP39-215ENST00000481409 PMFBP1Q8TBY8 1022 aa13.76□□□□□ -0.21
USP39-215ENST00000481409 SLAIN2Q9P270 581 aa13.76□□□□□ -0.21
USP39-215ENST00000481409 USP54Q70EL1 1684 aa13.75□□□□□ -0.21
USP39-215ENST00000481409 USP31Q70CQ4 1352 aa13.75□□□□□ -0.21
USP39-215ENST00000481409 MORC1Q86VD1 984 aa13.75□□□□□ -0.21
USP39-215ENST00000481409 SBNO1A3KN83 1393 aa13.73□□□□□ -0.21
USP39-215ENST00000481409 COG3Q96JB2 828 aa13.73□□□□□ -0.21
USP39-215ENST00000481409 ORAI2Q96SN7 254 aa13.73□□□□□ -0.21
USP39-215ENST00000481409 AATKQ6ZMQ8 1374 aa13.72□□□□□ -0.21
USP39-215ENST00000481409 TOM1O60784 492 aa13.71□□□□□ -0.21
USP39-215ENST00000481409 PPP2R1AP30153 589 aa13.71□□□□□ -0.21
USP39-215ENST00000481409 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.71□□□□□ -0.21
USP39-215ENST00000481409 OVOS2A0A0J9YW53 1432 aa13.71□□□□□ -0.22
USP39-215ENST00000481409 OVOS2Q6IE36 1432 aa13.71□□□□□ -0.22
USP39-215ENST00000481409 TRPM3Q9HCF6 1732 aaPredicted RBP13.7□□□□□ -0.22
USP39-215ENST00000481409 FOXO3O43524 673 aa13.7□□□□□ -0.22
USP39-215ENST00000481409 BRINP3Q76B58 766 aa13.7□□□□□ -0.22
USP39-215ENST00000481409 KRT28Q7Z3Y7 464 aa13.7□□□□□ -0.22
USP39-215ENST00000481409 GGNBP2Q9H3C7 697 aa13.7□□□□□ -0.22
USP39-215ENST00000481409 PIK3C2AO00443 1686 aa13.69□□□□□ -0.22
USP39-215ENST00000481409 NHSL1Q5SYE7 1610 aa13.68□□□□□ -0.22
USP39-215ENST00000481409 NME9Q86XW9 330 aa13.68□□□□□ -0.22
USP39-215ENST00000481409 MRS2Q9HD23 443 aa13.68□□□□□ -0.22
USP39-215ENST00000481409 ARHGEF10O15013 1369 aa13.68□□□□□ -0.22
USP39-215ENST00000481409 INSRP06213 1382 aa13.68□□□□□ -0.22
USP39-215ENST00000481409 KIF24Q5T7B8 1368 aa13.68□□□□□ -0.22
USP39-215ENST00000481409 PXDNQ92626 1479 aa13.67□□□□□ -0.22
USP39-215ENST00000481409 SOS2Q07890 1332 aaPredicted RBP13.67□□□□□ -0.22
USP39-215ENST00000481409 ABTB2Q8N961 1025 aa13.67□□□□□ -0.22
USP39-215ENST00000481409 KCNH5Q8NCM2 988 aa13.67□□□□□ -0.22
USP39-215ENST00000481409 CFAP53Q96M91 514 aa13.67□□□□□ -0.22
USP39-215ENST00000481409 ALS2Q96Q42 1657 aa13.66□□□□□ -0.22
USP39-215ENST00000481409 SMG6Q86US8 1419 aaKnown RBP13.66□□□□□ -0.22
USP39-215ENST00000481409 PAK3O75914 559 aaPredicted RBP13.66□□□□□ -0.22
USP39-215ENST00000481409 TNS3Q68CZ2 1445 aa13.65□□□□□ -0.22
USP39-215ENST00000481409 AHDC1Q5TGY3 1603 aaPredicted RBP13.65□□□□□ -0.22
USP39-215ENST00000481409 NLRP6P59044 892 aa13.65□□□□□ -0.22
USP39-215ENST00000481409 ROBO1Q9Y6N7 1651 aa13.64□□□□□ -0.23
USP39-215ENST00000481409 CERKQ8TCT0 537 aa13.64□□□□□ -0.23
USP39-215ENST00000481409 SPATA31A3Q5VYP0 1347 aa13.64□□□□□ -0.23
USP39-215ENST00000481409 MED1Q15648 1581 aaPredicted RBP13.63□□□□□ -0.23
USP39-215ENST00000481409 PNPLA6Q8IY17 1366 aa13.63□□□□□ -0.23
USP39-215ENST00000481409 MAP2P11137 1827 aaKnown RBP13.63□□□□□ -0.23
USP39-215ENST00000481409 CNGB1Q14028 1251 aaPredicted RBP13.63□□□□□ -0.23
USP39-215ENST00000481409 SLIT3O75094 1523 aa13.63□□□□□ -0.23
USP39-215ENST00000481409 USP19O94966 1318 aa13.63□□□□□ -0.23
USP39-215ENST00000481409 CDK12Q9NYV4 1490 aaPredicted RBP13.62□□□□□ -0.23
USP39-215ENST00000481409 MARF1Q9Y4F3 1742 aaKnown RBP13.62□□□□□ -0.23
USP39-215ENST00000481409 MTHFSP49914 203 aa13.62□□□□□ -0.23
USP39-215ENST00000481409 PNISRQ8TF01 805 aaKnown RBP13.62□□□□□ -0.23
USP39-215ENST00000481409 PHRF1Q9P1Y6 1649 aaKnown RBP13.61□□□□□ -0.23
USP39-215ENST00000481409 RTL1A6NKG5 1358 aa13.61□□□□□ -0.23
USP39-215ENST00000481409 LRRC59Q96AG4 307 aaKnown RBP13.61□□□□□ -0.23
USP39-215ENST00000481409 POLKQ9UBT6 870 aa13.61□□□□□ -0.23
USP39-215ENST00000481409 NUDCQ9Y266 331 aa13.6□□□□□ -0.23
USP39-215ENST00000481409 ABCC6O95255 1503 aa13.59□□□□□ -0.23
USP39-215ENST00000481409 TNNT2P45379 298 aaPredicted RBP13.59□□□□□ -0.23
USP39-215ENST00000481409 WDR43Q15061 677 aaKnown RBP eCLIP13.59□□□□□ -0.23
USP39-215ENST00000481409 ZRANB1Q9UGI0 708 aa13.59□□□□□ -0.23
USP39-215ENST00000481409 NFAT5O94916 1531 aa13.59□□□□□ -0.23
USP39-215ENST00000481409 FLT4P35916 1363 aa13.58□□□□□ -0.23
USP39-215ENST00000481409 UBAP1LF5GYI3 381 aa13.58□□□□□ -0.24
USP39-215ENST00000481409 CCDC184Q52MB2 194 aa13.58□□□□□ -0.24
USP39-215ENST00000481409 GCP02774 474 aa13.57□□□□□ -0.24
USP39-215ENST00000481409 XPCQ01831 940 aaPredicted RBP13.57□□□□□ -0.24
USP39-215ENST00000481409 PNNQ9H307 717 aaKnown RBP13.57□□□□□ -0.24
USP39-215ENST00000481409 COL3A1P02461 1466 aaPredicted RBP13.56□□□□□ -0.24
USP39-215ENST00000481409 DIAPH1O60610 1272 aaKnown RBP13.56□□□□□ -0.24
USP39-215ENST00000481409 LMOD2Q6P5Q4 547 aa13.56□□□□□ -0.24
USP39-215ENST00000481409 NGEFQ8N5V2 710 aa13.56□□□□□ -0.24
USP39-215ENST00000481409 COL22A1Q8NFW1 1626 aaPredicted RBP13.56□□□□□ -0.24
USP39-215ENST00000481409 CPDO75976 1380 aa13.56□□□□□ -0.24
USP39-215ENST00000481409 PHLPP1O60346 1717 aa13.56□□□□□ -0.24
USP39-215ENST00000481409 CRYBG1Q9Y4K1 1723 aa13.56□□□□□ -0.24
USP39-215ENST00000481409 MAP3K19Q56UN5 1328 aa13.55□□□□□ -0.24
USP39-215ENST00000481409 BLMP54132 1417 aaPredicted RBP13.55□□□□□ -0.24
USP39-215ENST00000481409 SHPRHQ149N8 1683 aa13.54□□□□□ -0.24
USP39-215ENST00000481409 LTN1O94822 1766 aa13.54□□□□□ -0.24
USP39-215ENST00000481409 AMPHP49418 695 aa13.54□□□□□ -0.24
USP39-215ENST00000481409 ARHGEF25Q86VW2 580 aa13.54□□□□□ -0.24
USP39-215ENST00000481409 FAM9BQ8IZU0 186 aa13.54□□□□□ -0.24
USP39-215ENST00000481409 IP6K1Q92551 441 aa13.54□□□□□ -0.24
USP39-215ENST00000481409 DDX17Q92841 729 aaKnown RBP13.54□□□□□ -0.24
USP39-215ENST00000481409 EMILIN1Q9Y6C2 1016 aa13.54□□□□□ -0.24
USP39-215ENST00000481409 COL16A1Q07092 1604 aaPredicted RBP13.53□□□□□ -0.24
USP39-215ENST00000481409 RRS1Q15050 365 aaKnown RBP13.53□□□□□ -0.24
USP39-215ENST00000481409 NCBP3Q53F19 620 aaKnown RBP13.53□□□□□ -0.24
USP39-215ENST00000481409 NUTM2GQ5VZR2 741 aa13.53□□□□□ -0.24
USP39-215ENST00000481409 PPM1GO15355 546 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms