RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 INTS3Q68E01 1043 aaKnown RBP16.5■□□□□ 0.23
USP42-206ENST00000479544 NPHP1O15259 732 aa16.5■□□□□ 0.23
USP42-206ENST00000479544 STK31Q9BXU1 1019 aa16.5■□□□□ 0.23
USP42-206ENST00000479544 SCAPERQ9BY12 1400 aa16.49■□□□□ 0.23
USP42-206ENST00000479544 CTTNBP2Q8WZ74 1663 aa16.49■□□□□ 0.23
USP42-206ENST00000479544 GOLGA6L6A8MZA4 724 aa16.48■□□□□ 0.23
USP42-206ENST00000479544 RBM27Q9P2N5 1060 aaKnown RBP16.48■□□□□ 0.23
USP42-206ENST00000479544 CCDC39Q9UFE4 941 aa16.48■□□□□ 0.23
USP42-206ENST00000479544 CCDC9Q9Y3X0 531 aaKnown RBP16.48■□□□□ 0.23
USP42-206ENST00000479544 FIBPO43427 364 aa16.48■□□□□ 0.23
USP42-206ENST00000479544 TNNT3P45378 269 aaPredicted RBP16.48■□□□□ 0.23
USP42-206ENST00000479544 CFAP43Q8NDM7 1665 aa16.48■□□□□ 0.23
USP42-206ENST00000479544 IFT57Q9NWB7 429 aa16.47■□□□□ 0.23
USP42-206ENST00000479544 CAMSAP2Q08AD1 1489 aa16.47■□□□□ 0.23
USP42-206ENST00000479544 ABCA8O94911 1581 aa16.47■□□□□ 0.23
USP42-206ENST00000479544 HSPA2P54652 639 aa16.47■□□□□ 0.23
USP42-206ENST00000479544 CBX1P83916 185 aa16.47■□□□□ 0.23
USP42-206ENST00000479544 COL17A1Q9UMD9 1497 aaPredicted RBP16.47■□□□□ 0.23
USP42-206ENST00000479544 NRDCO43847 1150 aa16.47■□□□□ 0.23
USP42-206ENST00000479544 LTV1Q96GA3 475 aaPredicted RBP16.47■□□□□ 0.23
USP42-206ENST00000479544 PRKAR2BP31323 418 aa16.46■□□□□ 0.23
USP42-206ENST00000479544 GDPD2Q9HCC8 539 aa16.46■□□□□ 0.23
USP42-206ENST00000479544 MAP7D2Q96T17 732 aa16.46■□□□□ 0.23
USP42-206ENST00000479544 PDCL3Q9H2J4 239 aa16.46■□□□□ 0.23
USP42-206ENST00000479544 EVC2Q86UK5 1308 aa16.46■□□□□ 0.22
USP42-206ENST00000479544 HAP1P54257 671 aaPredicted RBP16.45■□□□□ 0.22
USP42-206ENST00000479544 AAMPQ13685 434 aa16.45■□□□□ 0.22
USP42-206ENST00000479544 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.45■□□□□ 0.22
USP42-206ENST00000479544 TRIM27P14373 513 aa16.45■□□□□ 0.22
USP42-206ENST00000479544 ARHGAP5Q13017 1502 aa16.45■□□□□ 0.22
USP42-206ENST00000479544 NKTRP30414 1462 aaKnown RBP16.44■□□□□ 0.22
USP42-206ENST00000479544 PER1O15534 1290 aaPredicted RBP16.44■□□□□ 0.22
USP42-206ENST00000479544 RABEP1Q15276 862 aa16.44■□□□□ 0.22
USP42-206ENST00000479544 ZNF428Q96B54 188 aa16.44■□□□□ 0.22
USP42-206ENST00000479544 ISY1Q9ULR0 285 aaKnown RBP16.44■□□□□ 0.22
USP42-206ENST00000479544 FOSBP53539 338 aa16.44■□□□□ 0.22
USP42-206ENST00000479544 HSP90B1P14625 803 aaKnown RBP16.44■□□□□ 0.22
USP42-206ENST00000479544 ARAP3Q8WWN8 1544 aa16.43■□□□□ 0.22
USP42-206ENST00000479544 VGFO15240 615 aaPredicted RBP16.43■□□□□ 0.22
USP42-206ENST00000479544 API5Q9BZZ5 524 aaKnown RBP16.43■□□□□ 0.22
USP42-206ENST00000479544 KDM2BQ8NHM5 1336 aa16.43■□□□□ 0.22
USP42-206ENST00000479544 UPF3BQ9BZI7 483 aaKnown RBP16.43■□□□□ 0.22
USP42-206ENST00000479544 TSPY26PQ9H489 355 aa16.43■□□□□ 0.22
USP42-206ENST00000479544 WDR63Q8IWG1 891 aa16.42■□□□□ 0.22
USP42-206ENST00000479544 CIZ1Q9ULV3 898 aaPredicted RBP16.42■□□□□ 0.22
USP42-206ENST00000479544 RAPGEF6Q8TEU7 1601 aa16.42■□□□□ 0.22
USP42-206ENST00000479544 SMARCA5O60264 1052 aaPredicted RBP16.42■□□□□ 0.22
USP42-206ENST00000479544 A0A0G2JS52 829 aa16.42■□□□□ 0.22
USP42-206ENST00000479544 ZNF830Q96NB3 372 aaPredicted RBP16.42■□□□□ 0.22
USP42-206ENST00000479544 BAG4O95429 457 aaKnown RBP16.41■□□□□ 0.22
USP42-206ENST00000479544 STAC3Q96MF2 364 aa16.4■□□□□ 0.22
USP42-206ENST00000479544 LARP6Q9BRS8 491 aaKnown RBP16.4■□□□□ 0.22
USP42-206ENST00000479544 SMC3Q9UQE7 1217 aa16.4■□□□□ 0.22
USP42-206ENST00000479544 MAP3K4Q9Y6R4 1608 aa16.4■□□□□ 0.22
USP42-206ENST00000479544 BECN2A8MW95 431 aa16.4■□□□□ 0.22
USP42-206ENST00000479544 CCAR2Q8N163 923 aaKnown RBP16.4■□□□□ 0.22
USP42-206ENST00000479544 FAM177BA6PVY3 158 aa16.4■□□□□ 0.22
USP42-206ENST00000479544 IGSF3O75054 1194 aa16.39■□□□□ 0.22
USP42-206ENST00000479544 FKBP5Q13451 457 aaPredicted RBP16.39■□□□□ 0.22
USP42-206ENST00000479544 TWISTNBQ3B726 338 aaPredicted RBP16.39■□□□□ 0.22
USP42-206ENST00000479544 GOLGA6L19H0YKK7 550 aa16.39■□□□□ 0.21
USP42-206ENST00000479544 PARD3Q8TEW0 1356 aa16.39■□□□□ 0.21
USP42-206ENST00000479544 MBD3O95983 291 aa16.39■□□□□ 0.21
USP42-206ENST00000479544 BICD2Q8TD16 824 aa16.39■□□□□ 0.21
USP42-206ENST00000479544 MAP4K4O95819 1239 aaPredicted RBP16.38■□□□□ 0.21
USP42-206ENST00000479544 EIF2S2P20042 333 aaKnown RBP16.38■□□□□ 0.21
USP42-206ENST00000479544 TMPOP42166 694 aaKnown RBP16.38■□□□□ 0.21
USP42-206ENST00000479544 TBC1D9Q6ZT07 1266 aa16.38■□□□□ 0.21
USP42-206ENST00000479544 PTPRMP28827 1452 aa16.38■□□□□ 0.21
USP42-206ENST00000479544 SPDYE4A6NLX3 237 aa16.38■□□□□ 0.21
USP42-206ENST00000479544 GCC1Q96CN9 775 aa16.37■□□□□ 0.21
USP42-206ENST00000479544 GNAI1P63096 354 aa16.37■□□□□ 0.21
USP42-206ENST00000479544 LMOD3Q0VAK6 560 aa16.37■□□□□ 0.21
USP42-206ENST00000479544 USP25Q9UHP3 1055 aa16.37■□□□□ 0.21
USP42-206ENST00000479544 FBLN1P23142 703 aa16.36■□□□□ 0.21
USP42-206ENST00000479544 ATP6V1DQ9Y5K8 247 aa16.36■□□□□ 0.21
USP42-206ENST00000479544 HECW2Q9P2P5 1572 aa16.36■□□□□ 0.21
USP42-206ENST00000479544 GAS2L2Q8NHY3 880 aa16.36■□□□□ 0.21
USP42-206ENST00000479544 TESK2Q96S53 571 aa16.36■□□□□ 0.21
USP42-206ENST00000479544 MTERF4Q7Z6M4 381 aaKnown RBP16.36■□□□□ 0.21
USP42-206ENST00000479544 DDX54Q8TDD1 881 aaKnown RBP16.36■□□□□ 0.21
USP42-206ENST00000479544 TRIM5Q9C035 493 aa16.36■□□□□ 0.21
USP42-206ENST00000479544 DIAPH3Q9NSV4 1193 aa16.36■□□□□ 0.21
USP42-206ENST00000479544 GPATCH8Q9UKJ3 1502 aaKnown RBP16.36■□□□□ 0.21
USP42-206ENST00000479544 DCTN1Q14203 1278 aa16.36■□□□□ 0.21
USP42-206ENST00000479544 CERKQ8TCT0 537 aa16.35■□□□□ 0.21
USP42-206ENST00000479544 MAGI2Q86UL8 1455 aa16.34■□□□□ 0.21
USP42-206ENST00000479544 H3BQV1 296 aa16.34■□□□□ 0.21
USP42-206ENST00000479544 IFFO2Q5TF58 517 aa16.34■□□□□ 0.21
USP42-206ENST00000479544 TSHZ3Q63HK5 1081 aa16.34■□□□□ 0.21
USP42-206ENST00000479544 CFAP74Q9C0B2 1584 aa16.34■□□□□ 0.21
USP42-206ENST00000479544 NUP153P49790 1475 aaKnown RBP16.34■□□□□ 0.21
USP42-206ENST00000479544 PRIM1P49642 420 aaKnown RBP16.34■□□□□ 0.21
USP42-206ENST00000479544 EXOC6BQ9Y2D4 811 aa16.33■□□□□ 0.21
USP42-206ENST00000479544 PLCH2O75038 1416 aa16.33■□□□□ 0.21
USP42-206ENST00000479544 GNL2Q13823 731 aaKnown RBP16.33■□□□□ 0.21
USP42-206ENST00000479544 CEBPAP49715 358 aaPredicted RBP16.33■□□□□ 0.2
USP42-206ENST00000479544 CEBPZQ03701 1054 aaKnown RBP16.33■□□□□ 0.2
USP42-206ENST00000479544 ZSCAN23Q3MJ62 389 aa16.33■□□□□ 0.2
USP42-206ENST00000479544 UHRF1BP1Q6BDS2 1440 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms