RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 AKNAQ7Z591 1439 aa9.42□□□□□ -0.9
SF3B1-209ENST00000479532 PRSS12P56730 875 aa9.42□□□□□ -0.9
SF3B1-209ENST00000479532 INSM1Q01101 510 aaPredicted RBP9.42□□□□□ -0.9
SF3B1-209ENST00000479532 ZNF777Q9ULD5 760 aaPredicted RBP9.42□□□□□ -0.9
SF3B1-209ENST00000479532 ADGRL1O94910 1474 aa9.41□□□□□ -0.9
SF3B1-209ENST00000479532 MIA2Q96PC5 1412 aa9.41□□□□□ -0.9
SF3B1-209ENST00000479532 RNF223E7ERA6 249 aa9.41□□□□□ -0.9
SF3B1-209ENST00000479532 ST8SIA5O15466 376 aa9.41□□□□□ -0.9
SF3B1-209ENST00000479532 ZPR1O75312 459 aa9.41□□□□□ -0.9
SF3B1-209ENST00000479532 EN1Q05925 392 aaPredicted RBP9.41□□□□□ -0.9
SF3B1-209ENST00000479532 SMYD5Q6GMV2 418 aa9.4□□□□□ -0.9
SF3B1-209ENST00000479532 PPARGC1BQ86YN6 1023 aaKnown RBP9.4□□□□□ -0.9
SF3B1-209ENST00000479532 ZC3H15Q8WU90 426 aaKnown RBP9.4□□□□□ -0.9
SF3B1-209ENST00000479532 DENND4BO75064 1496 aaPredicted RBP9.4□□□□□ -0.91
SF3B1-209ENST00000479532 SAMD9LQ8IVG5 1584 aa9.39□□□□□ -0.91
SF3B1-209ENST00000479532 TNFRSF10AO00220 468 aa9.39□□□□□ -0.91
SF3B1-209ENST00000479532 ZNF697Q5TEC3 545 aa9.39□□□□□ -0.91
SF3B1-209ENST00000479532 AAASQ9NRG9 546 aa9.39□□□□□ -0.91
SF3B1-209ENST00000479532 ABCC1P33527 1531 aa9.39□□□□□ -0.91
SF3B1-209ENST00000479532 CAMSAP2Q08AD1 1489 aa9.39□□□□□ -0.91
SF3B1-209ENST00000479532 SCAPERQ9BY12 1400 aa9.39□□□□□ -0.91
SF3B1-209ENST00000479532 PTPN23Q9H3S7 1636 aa9.38□□□□□ -0.91
SF3B1-209ENST00000479532 SLC4A3P48751 1232 aa9.38□□□□□ -0.91
SF3B1-209ENST00000479532 FGD6Q6ZV73 1430 aa9.38□□□□□ -0.91
SF3B1-209ENST00000479532 KIAA1107Q9UPP5 1409 aa9.38□□□□□ -0.91
SF3B1-209ENST00000479532 SYCP2Q9BX26 1530 aa9.37□□□□□ -0.91
SF3B1-209ENST00000479532 ZNF518AQ6AHZ1 1483 aa9.37□□□□□ -0.91
SF3B1-209ENST00000479532 CERKQ8TCT0 537 aa9.37□□□□□ -0.91
SF3B1-209ENST00000479532 RICTORQ6R327 1708 aa9.36□□□□□ -0.91
SF3B1-209ENST00000479532 RSPH4AQ5TD94 716 aa9.36□□□□□ -0.91
SF3B1-209ENST00000479532 SLF2Q8IX21 1173 aa9.36□□□□□ -0.91
SF3B1-209ENST00000479532 FAM198AQ9UFP1 575 aa9.36□□□□□ -0.91
SF3B1-209ENST00000479532 POGZQ7Z3K3 1410 aa9.36□□□□□ -0.91
SF3B1-209ENST00000479532 TCOF1Q13428 1488 aaKnown RBP9.35□□□□□ -0.91
SF3B1-209ENST00000479532 ARHGEF5Q12774 1597 aa9.35□□□□□ -0.91
SF3B1-209ENST00000479532 NUDT18Q6ZVK8 323 aa9.35□□□□□ -0.91
SF3B1-209ENST00000479532 EMID1Q96A84 441 aaPredicted RBP9.35□□□□□ -0.91
SF3B1-209ENST00000479532 CCDC141Q6ZP82 1450 aa9.34□□□□□ -0.91
SF3B1-209ENST00000479532 C11orf95C9JLR9 678 aaPredicted RBP9.34□□□□□ -0.91
SF3B1-209ENST00000479532 C3orf80F5H4A9 247 aa9.34□□□□□ -0.91
SF3B1-209ENST00000479532 MLLT3P42568 568 aaPredicted RBP9.34□□□□□ -0.91
SF3B1-209ENST00000479532 HNRNPMP52272 730 aaKnown RBP eCLIP9.34□□□□□ -0.91
SF3B1-209ENST00000479532 FAM50AQ14320 339 aaKnown RBP9.34□□□□□ -0.91
SF3B1-209ENST00000479532 FRMPD1Q5SYB0 1578 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 HECW2Q9P2P5 1572 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 ZMYM4Q5VZL5 1548 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 GDF9O60383 454 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 RAPGEF3O95398 923 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 TSPY4P0CV99 314 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 TSPY10P0CW01 314 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 ANKLE1Q8NAG6 615 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 PCDHB3Q9Y5E6 796 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 MAGI2Q86UL8 1455 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 KDM5CP41229 1560 aa9.33□□□□□ -0.92
SF3B1-209ENST00000479532 ZNF644Q9H582 1327 aaPredicted RBP9.32□□□□□ -0.92
SF3B1-209ENST00000479532 ARHGEF12Q9NZN5 1544 aa9.32□□□□□ -0.92
SF3B1-209ENST00000479532 PDIA6Q15084 440 aa9.32□□□□□ -0.92
SF3B1-209ENST00000479532 LIAT1Q6ZQX7 453 aa9.32□□□□□ -0.92
SF3B1-209ENST00000479532 PRR14Q9BWN1 585 aa9.32□□□□□ -0.92
SF3B1-209ENST00000479532 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.32□□□□□ -0.92
SF3B1-209ENST00000479532 COL17A1Q9UMD9 1497 aaPredicted RBP9.32□□□□□ -0.92
SF3B1-209ENST00000479532 CROCC2H7BZ55 1655 aa9.32□□□□□ -0.92
SF3B1-209ENST00000479532 SPAG9O60271 1321 aaKnown RBP9.31□□□□□ -0.92
SF3B1-209ENST00000479532 RRBP1Q9P2E9 1410 aaKnown RBP9.31□□□□□ -0.92
SF3B1-209ENST00000479532 TRAPPC8Q9Y2L5 1435 aa9.31□□□□□ -0.92
SF3B1-209ENST00000479532 ZFYVE16Q7Z3T8 1539 aa9.31□□□□□ -0.92
SF3B1-209ENST00000479532 DNMT1P26358 1616 aaKnown RBP9.31□□□□□ -0.92
SF3B1-209ENST00000479532 SPDYE16A6NNV3 312 aaPredicted RBP9.31□□□□□ -0.92
SF3B1-209ENST00000479532 PPEF1O14829 653 aaPredicted RBP9.31□□□□□ -0.92
SF3B1-209ENST00000479532 WIPF1O43516 503 aa9.31□□□□□ -0.92
SF3B1-209ENST00000479532 SWT1Q5T5J6 900 aaKnown RBP9.31□□□□□ -0.92
SF3B1-209ENST00000479532 RBM26Q5T8P6 1007 aaKnown RBP9.31□□□□□ -0.92
SF3B1-209ENST00000479532 AFAP1Q8N556 730 aa9.31□□□□□ -0.92
SF3B1-209ENST00000479532 MBD5Q9P267 1494 aa9.31□□□□□ -0.92
SF3B1-209ENST00000479532 MLH3Q9UHC1 1453 aa9.3□□□□□ -0.92
SF3B1-209ENST00000479532 SLC24A3Q9HC58 644 aa9.3□□□□□ -0.92
SF3B1-209ENST00000479532 ATP7AQ04656 1500 aa9.3□□□□□ -0.92
SF3B1-209ENST00000479532 ARHGEF40Q8TER5 1519 aa9.3□□□□□ -0.92
SF3B1-209ENST00000479532 DAPK1P53355 1430 aa9.3□□□□□ -0.92
SF3B1-209ENST00000479532 ADGBQ8N7X0 1667 aa9.29□□□□□ -0.92
SF3B1-209ENST00000479532 INO80Q9ULG1 1556 aaPredicted RBP9.29□□□□□ -0.92
SF3B1-209ENST00000479532 MAST1Q9Y2H9 1570 aa9.29□□□□□ -0.92
SF3B1-209ENST00000479532 SHANK2Q9UPX8 1470 aa9.29□□□□□ -0.92
SF3B1-209ENST00000479532 LOC100996750A0A140TA64 210 aa9.29□□□□□ -0.92
SF3B1-209ENST00000479532 ZMYND10O75800 440 aa9.29□□□□□ -0.92
SF3B1-209ENST00000479532 KRTAP4-6Q9BYQ5 205 aa9.29□□□□□ -0.92
SF3B1-209ENST00000479532 RTEL1-TNFRSF6BF6WH68 1400 aa9.29□□□□□ -0.92
SF3B1-209ENST00000479532 KIDINS220Q9ULH0 1771 aa9.28□□□□□ -0.92
SF3B1-209ENST00000479532 GMPR2Q9P2T1 348 aaKnown RBP9.28□□□□□ -0.92
SF3B1-209ENST00000479532 C9orf84Q5VXU9 1444 aa9.28□□□□□ -0.92
SF3B1-209ENST00000479532 S1PR4O95977 384 aa9.27□□□□□ -0.93
SF3B1-209ENST00000479532 BRPF1P55201 1214 aaPredicted RBP9.27□□□□□ -0.93
SF3B1-209ENST00000479532 FOXC1Q12948 553 aa9.27□□□□□ -0.93
SF3B1-209ENST00000479532 NFX1Q12986 1120 aaKnown RBP9.27□□□□□ -0.93
SF3B1-209ENST00000479532 BLOC1S3Q6QNY0 202 aa9.27□□□□□ -0.93
SF3B1-209ENST00000479532 GPIHBP1Q8IV16 184 aa9.27□□□□□ -0.93
SF3B1-209ENST00000479532 DACH1Q9UI36 760 aa9.27□□□□□ -0.93
SF3B1-209ENST00000479532 ABCC5O15440 1437 aa9.27□□□□□ -0.93
SF3B1-209ENST00000479532 PLXNC1O60486 1568 aa9.27□□□□□ -0.93
SF3B1-209ENST00000479532 ANKRD30AQ9BXX3 1397 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms