RNA–Protein interactions for RNA: ENST00000477552.1

PTPRD-209, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 4

Gene PTPRD, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-209ENST00000477552 BRPF1P55201 1214 aaPredicted RBP10.7□□□□□ -0.7
PTPRD-209ENST00000477552 CFAP44Q96MT7 982 aa10.7□□□□□ -0.7
PTPRD-209ENST00000477552 SETD1AO15047 1707 aaKnown RBP10.7□□□□□ -0.7
PTPRD-209ENST00000477552 TECPR2O15040 1411 aa10.69□□□□□ -0.7
PTPRD-209ENST00000477552 PPIP5K1Q6PFW1 1433 aa10.69□□□□□ -0.7
PTPRD-209ENST00000477552 AATKQ6ZMQ8 1374 aa10.69□□□□□ -0.7
PTPRD-209ENST00000477552 BCAR3O75815 825 aa10.69□□□□□ -0.7
PTPRD-209ENST00000477552 ZNF692Q9BU19 519 aaPredicted RBP10.69□□□□□ -0.7
PTPRD-209ENST00000477552 ESF1Q9H501 851 aaKnown RBP10.69□□□□□ -0.7
PTPRD-209ENST00000477552 DDX19BQ9UMR2 479 aa10.69□□□□□ -0.7
PTPRD-209ENST00000477552 RIMS2Q9UQ26 1411 aa10.68□□□□□ -0.7
PTPRD-209ENST00000477552 SENP3-EIF4A1A0A087X0R7 540 aa10.68□□□□□ -0.7
PTPRD-209ENST00000477552 FTSJ3Q8IY81 847 aaKnown RBP10.68□□□□□ -0.7
PTPRD-209ENST00000477552 PRAM1Q96QH2 718 aa10.68□□□□□ -0.7
PTPRD-209ENST00000477552 RIMBP3CA6NJZ7 1639 aa10.68□□□□□ -0.7
PTPRD-209ENST00000477552 RIMBP3BA6NNM3 1639 aa10.68□□□□□ -0.7
PTPRD-209ENST00000477552 RIMBP3Q9UFD9 1639 aa10.68□□□□□ -0.7
PTPRD-209ENST00000477552 NLRP1Q9C000 1473 aa10.68□□□□□ -0.7
PTPRD-209ENST00000477552 FYB1O15117 783 aa10.67□□□□□ -0.7
PTPRD-209ENST00000477552 PAK3O75914 559 aaPredicted RBP10.67□□□□□ -0.7
PTPRD-209ENST00000477552 TMPOP42166 694 aaKnown RBP10.67□□□□□ -0.7
PTPRD-209ENST00000477552 MVPQ14764 893 aaKnown RBP10.67□□□□□ -0.7
PTPRD-209ENST00000477552 C8orf34Q49A92 452 aa10.67□□□□□ -0.7
PTPRD-209ENST00000477552 DZIP1LQ8IYY4 767 aaKnown RBP10.67□□□□□ -0.7
PTPRD-209ENST00000477552 PLEKHF1Q96S99 279 aa10.67□□□□□ -0.7
PTPRD-209ENST00000477552 CABP2Q9NPB3 220 aa10.67□□□□□ -0.7
PTPRD-209ENST00000477552 SPINK5Q9NQ38 1064 aaPredicted RBP10.67□□□□□ -0.7
PTPRD-209ENST00000477552 CD163L1Q9NR16 1453 aa10.67□□□□□ -0.7
PTPRD-209ENST00000477552 ITSN1Q15811 1721 aa10.67□□□□□ -0.7
PTPRD-209ENST00000477552 FAM69CQ0P6D2 419 aa10.66□□□□□ -0.7
PTPRD-209ENST00000477552 HDAC1Q13547 482 aaPredicted RBP10.66□□□□□ -0.7
PTPRD-209ENST00000477552 NPM2Q86SE8 214 aaKnown RBP10.66□□□□□ -0.7
PTPRD-209ENST00000477552 ARHGAP45Q92619 1136 aa10.66□□□□□ -0.7
PTPRD-209ENST00000477552 CDK19Q9BWU1 502 aa10.66□□□□□ -0.7
PTPRD-209ENST00000477552 CPS1P31327 1500 aa10.66□□□□□ -0.7
PTPRD-209ENST00000477552 MON2Q7Z3U7 1717 aa10.66□□□□□ -0.7
PTPRD-209ENST00000477552 CDK12Q9NYV4 1490 aaPredicted RBP10.66□□□□□ -0.7
PTPRD-209ENST00000477552 MAP2P11137 1827 aaKnown RBP10.65□□□□□ -0.7
PTPRD-209ENST00000477552 DEKP35659 375 aaKnown RBP10.65□□□□□ -0.7
PTPRD-209ENST00000477552 AKAP12Q02952 1782 aa10.65□□□□□ -0.71
PTPRD-209ENST00000477552 TNNT2P45379 298 aaPredicted RBP10.64□□□□□ -0.71
PTPRD-209ENST00000477552 FRAT1Q92837 279 aaPredicted RBP10.64□□□□□ -0.71
PTPRD-209ENST00000477552 STK26Q9P289 416 aa10.64□□□□□ -0.71
PTPRD-209ENST00000477552 COG6Q9Y2V7 657 aa10.64□□□□□ -0.71
PTPRD-209ENST00000477552 CPSF1Q10570 1443 aaKnown RBP10.64□□□□□ -0.71
PTPRD-209ENST00000477552 KIF24Q5T7B8 1368 aa10.64□□□□□ -0.71
PTPRD-209ENST00000477552 MINK1Q8N4C8 1332 aaPredicted RBP10.63□□□□□ -0.71
PTPRD-209ENST00000477552 U2SURPO15042 1029 aaKnown RBP10.63□□□□□ -0.71
PTPRD-209ENST00000477552 GNAI1P63096 354 aa10.63□□□□□ -0.71
PTPRD-209ENST00000477552 NEUROD2Q15784 382 aa10.63□□□□□ -0.71
PTPRD-209ENST00000477552 ATF7IPQ6VMQ6 1270 aa10.63□□□□□ -0.71
PTPRD-209ENST00000477552 SMC4Q9NTJ3 1288 aa10.63□□□□□ -0.71
PTPRD-209ENST00000477552 TSPOAP1O95153 1857 aa10.63□□□□□ -0.71
PTPRD-209ENST00000477552 WASLO00401 505 aaPredicted RBP10.62□□□□□ -0.71
PTPRD-209ENST00000477552 RIPK4P57078 832 aa10.62□□□□□ -0.71
PTPRD-209ENST00000477552 RGS3P49796 1198 aa10.61□□□□□ -0.71
PTPRD-209ENST00000477552 NFE2L2Q16236 605 aa10.61□□□□□ -0.71
PTPRD-209ENST00000477552 CYB5RLQ6IPT4 315 aa10.61□□□□□ -0.71
PTPRD-209ENST00000477552 PANK1Q8TE04 598 aa10.61□□□□□ -0.71
PTPRD-209ENST00000477552 GGNBP2Q9H3C7 697 aa10.61□□□□□ -0.71
PTPRD-209ENST00000477552 IFT57Q9NWB7 429 aa10.61□□□□□ -0.71
PTPRD-209ENST00000477552 CABP1Q9NZU7 370 aa10.61□□□□□ -0.71
PTPRD-209ENST00000477552 CCDC61Q9Y6R9 512 aa10.61□□□□□ -0.71
PTPRD-209ENST00000477552 NRXN3Q9Y4C0 1643 aa10.6□□□□□ -0.71
PTPRD-209ENST00000477552 IGHDP01880 384 aa10.6□□□□□ -0.71
PTPRD-209ENST00000477552 NBR1Q14596 966 aa10.6□□□□□ -0.71
PTPRD-209ENST00000477552 COG3Q96JB2 828 aa10.6□□□□□ -0.71
PTPRD-209ENST00000477552 TRIM35Q9UPQ4 493 aa10.6□□□□□ -0.71
PTPRD-209ENST00000477552 DMRT2Q9Y5R5 561 aa10.6□□□□□ -0.71
PTPRD-209ENST00000477552 C3P01024 1663 aa10.6□□□□□ -0.71
PTPRD-209ENST00000477552 LRRC7Q96NW7 1537 aa10.59□□□□□ -0.71
PTPRD-209ENST00000477552 GCC1Q96CN9 775 aa10.59□□□□□ -0.71
PTPRD-209ENST00000477552 RRP7AQ9Y3A4 280 aaKnown RBP10.59□□□□□ -0.71
PTPRD-209ENST00000477552 TNRQ92752 1358 aa10.59□□□□□ -0.71
PTPRD-209ENST00000477552 DIP2AQ14689 1571 aa10.59□□□□□ -0.71
PTPRD-209ENST00000477552 UBR1Q8IWV7 1749 aa10.58□□□□□ -0.72
PTPRD-209ENST00000477552 KIF13AQ9H1H9 1805 aa10.58□□□□□ -0.72
PTPRD-209ENST00000477552 PIK3R4Q99570 1358 aa10.58□□□□□ -0.72
PTPRD-209ENST00000477552 ADRA2BP18089 450 aa10.58□□□□□ -0.72
PTPRD-209ENST00000477552 EXOSC9Q06265 439 aaKnown RBP10.58□□□□□ -0.72
PTPRD-209ENST00000477552 SAFB2Q14151 953 aaKnown RBP eCLIP10.58□□□□□ -0.72
PTPRD-209ENST00000477552 SMC5Q8IY18 1101 aa10.58□□□□□ -0.72
PTPRD-209ENST00000477552 API5Q9BZZ5 524 aaKnown RBP10.58□□□□□ -0.72
PTPRD-209ENST00000477552 RSPH6AQ9H0K4 717 aa10.58□□□□□ -0.72
PTPRD-209ENST00000477552 NRKQ7Z2Y5 1582 aa10.57□□□□□ -0.72
PTPRD-209ENST00000477552 TMEM2Q9UHN6 1383 aa10.57□□□□□ -0.72
PTPRD-209ENST00000477552 PLEKHG1Q9ULL1 1385 aa10.57□□□□□ -0.72
PTPRD-209ENST00000477552 NUTM2DQ5VT03 806 aaPredicted RBP10.57□□□□□ -0.72
PTPRD-209ENST00000477552 FBXO31Q5XUX0 539 aaPredicted RBP10.57□□□□□ -0.72
PTPRD-209ENST00000477552 POLKQ9UBT6 870 aa10.57□□□□□ -0.72
PTPRD-209ENST00000477552 PTCH1Q13635 1447 aa10.57□□□□□ -0.72
PTPRD-209ENST00000477552 RIMS1Q86UR5 1692 aaKnown RBP10.57□□□□□ -0.72
PTPRD-209ENST00000477552 TRIM27P14373 513 aa10.56□□□□□ -0.72
PTPRD-209ENST00000477552 IL27Q8NEV9 243 aa10.56□□□□□ -0.72
PTPRD-209ENST00000477552 SSH1Q8WYL5 1049 aa10.56□□□□□ -0.72
PTPRD-209ENST00000477552 TBC1D32Q96NH3 1257 aa10.56□□□□□ -0.72
PTPRD-209ENST00000477552 CHMP4AQ9BY43 222 aa10.56□□□□□ -0.72
PTPRD-209ENST00000477552 ZBTB40Q9NUA8 1239 aa10.56□□□□□ -0.72
PTPRD-209ENST00000477552 PDZRN3Q9UPQ7 1066 aa10.56□□□□□ -0.72
PTPRD-209ENST00000477552 PCDHB15Q9Y5E8 787 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms