RNA–Protein interactions for RNA: ENST00000477299.5

COPS3-207, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 656 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-207ENST00000477299 SSH2Q76I76 1423 aa22.06■■□□□ 1.12
COPS3-207ENST00000477299 NRKQ7Z2Y5 1582 aa22.05■■□□□ 1.12
COPS3-207ENST00000477299 SBNO1A3KN83 1393 aa22.05■■□□□ 1.12
COPS3-207ENST00000477299 PNPLA6Q8IY17 1366 aa22.05■■□□□ 1.12
COPS3-207ENST00000477299 CARD14Q9BXL6 1004 aa22.05■■□□□ 1.12
COPS3-207ENST00000477299 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.04■■□□□ 1.12
COPS3-207ENST00000477299 ZNF692Q9BU19 519 aaPredicted RBP22.04■■□□□ 1.12
COPS3-207ENST00000477299 ZRANB1Q9UGI0 708 aa22.04■■□□□ 1.12
COPS3-207ENST00000477299 TNS3Q68CZ2 1445 aa22.04■■□□□ 1.12
COPS3-207ENST00000477299 TTC21BQ7Z4L5 1316 aa22.04■■□□□ 1.12
COPS3-207ENST00000477299 JCADQ9P266 1359 aa22.03■■□□□ 1.12
COPS3-207ENST00000477299 HDGFL2Q7Z4V5 671 aaPredicted RBP22.03■■□□□ 1.12
COPS3-207ENST00000477299 CABLES1Q8TDN4 633 aa22.03■■□□□ 1.12
COPS3-207ENST00000477299 TERF2IPQ9NYB0 399 aa22.03■■□□□ 1.12
COPS3-207ENST00000477299 PIK3C2AO00443 1686 aa22.01■■□□□ 1.11
COPS3-207ENST00000477299 ANKRD36BQ8N2N9 1353 aa22.01■■□□□ 1.11
COPS3-207ENST00000477299 NINLQ9Y2I6 1382 aa22.01■■□□□ 1.11
COPS3-207ENST00000477299 MARF1Q9Y4F3 1742 aaKnown RBP22.01■■□□□ 1.11
COPS3-207ENST00000477299 NUTM2BA6NNL0 878 aaPredicted RBP22■■□□□ 1.11
COPS3-207ENST00000477299 NUTM2EB1AL46 878 aaPredicted RBP22■■□□□ 1.11
COPS3-207ENST00000477299 NUTM2AQ8IVF1 878 aaPredicted RBP22■■□□□ 1.11
COPS3-207ENST00000477299 PANK3Q9H999 370 aa22■■□□□ 1.11
COPS3-207ENST00000477299 COL22A1Q8NFW1 1626 aaPredicted RBP21.99■■□□□ 1.11
COPS3-207ENST00000477299 ILDR2Q71H61 639 aa21.99■■□□□ 1.11
COPS3-207ENST00000477299 NME9Q86XW9 330 aa21.99■■□□□ 1.11
COPS3-207ENST00000477299 ABTB2Q8N961 1025 aa21.99■■□□□ 1.11
COPS3-207ENST00000477299 CRYBG1Q9Y4K1 1723 aa21.99■■□□□ 1.11
COPS3-207ENST00000477299 ABCA3Q99758 1704 aa21.98■■□□□ 1.11
COPS3-207ENST00000477299 MED1Q15648 1581 aaPredicted RBP21.98■■□□□ 1.11
COPS3-207ENST00000477299 LRP6O75581 1613 aa21.98■■□□□ 1.11
COPS3-207ENST00000477299 EDC4Q6P2E9 1401 aaKnown RBP21.96■■□□□ 1.11
COPS3-207ENST00000477299 NSD3Q9BZ95 1437 aa21.95■■□□□ 1.1
COPS3-207ENST00000477299 NLRP6P59044 892 aa21.94■■□□□ 1.1
COPS3-207ENST00000477299 ARHGEF10O15013 1369 aa21.94■■□□□ 1.1
COPS3-207ENST00000477299 KIF20BQ96Q89 1820 aa21.94■■□□□ 1.1
COPS3-207ENST00000477299 BRD4O60885 1362 aaPredicted RBP21.93■■□□□ 1.1
COPS3-207ENST00000477299 PHRF1Q9P1Y6 1649 aaKnown RBP21.93■■□□□ 1.1
COPS3-207ENST00000477299 TTC21AQ8NDW8 1320 aa21.92■■□□□ 1.1
COPS3-207ENST00000477299 FYB1O15117 783 aa21.92■■□□□ 1.1
COPS3-207ENST00000477299 ADAMTS2O95450 1211 aa21.91■■□□□ 1.1
COPS3-207ENST00000477299 GGNBP2Q9H3C7 697 aa21.91■■□□□ 1.1
COPS3-207ENST00000477299 SPATA31A6Q5VVP1 1343 aa21.9■■□□□ 1.1
COPS3-207ENST00000477299 ZNF316A6NFI3 1004 aaPredicted RBP21.89■■□□□ 1.09
COPS3-207ENST00000477299 PER1O15534 1290 aaPredicted RBP21.89■■□□□ 1.09
COPS3-207ENST00000477299 FBLN1P23142 703 aa21.89■■□□□ 1.09
COPS3-207ENST00000477299 NLRP13Q86W25 1043 aa21.89■■□□□ 1.09
COPS3-207ENST00000477299 SOX12O15370 315 aa21.88■■□□□ 1.09
COPS3-207ENST00000477299 USP54Q70EL1 1684 aa21.88■■□□□ 1.09
COPS3-207ENST00000477299 USP19O94966 1318 aa21.87■■□□□ 1.09
COPS3-207ENST00000477299 DDX10Q13206 875 aaKnown RBP21.87■■□□□ 1.09
COPS3-207ENST00000477299 USP31Q70CQ4 1352 aa21.87■■□□□ 1.09
COPS3-207ENST00000477299 GCP02774 474 aa21.85■■□□□ 1.09
COPS3-207ENST00000477299 HAP1P54257 671 aaPredicted RBP21.85■■□□□ 1.09
COPS3-207ENST00000477299 ZC3H6P61129 1189 aaKnown RBP21.85■■□□□ 1.09
COPS3-207ENST00000477299 OVOS2A0A0J9YW53 1432 aa21.85■■□□□ 1.09
COPS3-207ENST00000477299 OVOS2Q6IE36 1432 aa21.85■■□□□ 1.09
COPS3-207ENST00000477299 SLIT3O75094 1523 aa21.85■■□□□ 1.09
COPS3-207ENST00000477299 CNGB1Q14028 1251 aaPredicted RBP21.84■■□□□ 1.09
COPS3-207ENST00000477299 SOCS7O14512 581 aa21.83■■□□□ 1.09
COPS3-207ENST00000477299 RGPD5Q99666 1765 aa21.82■■□□□ 1.08
COPS3-207ENST00000477299 FAM83GA6ND36 823 aa21.82■■□□□ 1.08
COPS3-207ENST00000477299 MEX3CQ5U5Q3 659 aaKnown RBP21.82■■□□□ 1.08
COPS3-207ENST00000477299 C8orf37Q96NL8 207 aa21.82■■□□□ 1.08
COPS3-207ENST00000477299 KNSTRNQ9Y448 316 aa21.82■■□□□ 1.08
COPS3-207ENST00000477299 ANKRD26Q9UPS8 1709 aa21.82■■□□□ 1.08
COPS3-207ENST00000477299 CHRNA2Q15822 529 aa21.81■■□□□ 1.08
COPS3-207ENST00000477299 AMER1Q5JTC6 1135 aaPredicted RBP21.81■■□□□ 1.08
COPS3-207ENST00000477299 COG3Q96JB2 828 aa21.81■■□□□ 1.08
COPS3-207ENST00000477299 CGNL1Q0VF96 1302 aa21.8■■□□□ 1.08
COPS3-207ENST00000477299 NFAT5O94916 1531 aa21.8■■□□□ 1.08
COPS3-207ENST00000477299 LTN1O94822 1766 aa21.8■■□□□ 1.08
COPS3-207ENST00000477299 KIAA0232Q92628 1395 aa21.8■■□□□ 1.08
COPS3-207ENST00000477299 ZBTB7CA1YPR0 619 aa21.8■■□□□ 1.08
COPS3-207ENST00000477299 MAP2P11137 1827 aaKnown RBP21.79■■□□□ 1.08
COPS3-207ENST00000477299 CC2D1BQ5T0F9 858 aaKnown RBP21.78■■□□□ 1.08
COPS3-207ENST00000477299 NGLY1Q96IV0 654 aa21.78■■□□□ 1.08
COPS3-207ENST00000477299 RGS17Q9UGC6 210 aaPredicted RBP21.78■■□□□ 1.08
COPS3-207ENST00000477299 COL18A1P39060 1754 aa21.78■■□□□ 1.08
COPS3-207ENST00000477299 PLCH1Q4KWH8 1693 aa21.78■■□□□ 1.08
COPS3-207ENST00000477299 TNNT2P45379 298 aaPredicted RBP21.76■■□□□ 1.07
COPS3-207ENST00000477299 PRDM11Q9NQV5 511 aa21.76■■□□□ 1.07
COPS3-207ENST00000477299 ARHGEF25Q86VW2 580 aa21.75■■□□□ 1.07
COPS3-207ENST00000477299 AFF2P51816 1311 aa21.75■■□□□ 1.07
COPS3-207ENST00000477299 COL14A1Q05707 1796 aaKnown RBP21.74■■□□□ 1.07
COPS3-207ENST00000477299 RRS1Q15050 365 aaKnown RBP21.74■■□□□ 1.07
COPS3-207ENST00000477299 KCNH5Q8NCM2 988 aa21.74■■□□□ 1.07
COPS3-207ENST00000477299 AXIN2Q9Y2T1 843 aa21.73■■□□□ 1.07
COPS3-207ENST00000477299 CPDO75976 1380 aa21.73■■□□□ 1.07
COPS3-207ENST00000477299 LMO7Q8WWI1 1683 aa21.72■■□□□ 1.07
COPS3-207ENST00000477299 CAMTA1Q9Y6Y1 1673 aa21.72■■□□□ 1.07
COPS3-207ENST00000477299 PEAK1Q9H792 1746 aa21.72■■□□□ 1.07
COPS3-207ENST00000477299 SLIT2O94813 1529 aa21.71■■□□□ 1.07
COPS3-207ENST00000477299 MORC1Q86VD1 984 aa21.71■■□□□ 1.07
COPS3-207ENST00000477299 FNBP4Q8N3X1 1017 aaPredicted RBP21.71■■□□□ 1.07
COPS3-207ENST00000477299 BTG4Q9NY30 223 aa21.71■■□□□ 1.07
COPS3-207ENST00000477299 MAP3K19Q56UN5 1328 aa21.71■■□□□ 1.07
COPS3-207ENST00000477299 NRAPQ86VF7 1730 aa21.71■■□□□ 1.07
COPS3-207ENST00000477299 BCL9LQ86UU0 1499 aa21.71■■□□□ 1.07
COPS3-207ENST00000477299 NWD2Q9ULI1 1742 aa21.69■■□□□ 1.06
COPS3-207ENST00000477299 USP21Q9UK80 565 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms