RNA–Protein interactions for RNA: ENST00000476642.5

HLA-DPA1-246, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 519 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-246ENST00000476642 TRPC5Q9UL62 973 aaPredicted RBP18.4■□□□□ 0.54
HLA-DPA1-246ENST00000476642 BRD4O60885 1362 aaPredicted RBP18.4■□□□□ 0.54
HLA-DPA1-246ENST00000476642 PXDNQ92626 1479 aa18.39■□□□□ 0.54
HLA-DPA1-246ENST00000476642 ZNF692Q9BU19 519 aaPredicted RBP18.39■□□□□ 0.53
HLA-DPA1-246ENST00000476642 CABP1Q9NZU7 370 aa18.39■□□□□ 0.53
HLA-DPA1-246ENST00000476642 XPCQ01831 940 aaPredicted RBP18.38■□□□□ 0.53
HLA-DPA1-246ENST00000476642 ACEP12821 1306 aa18.38■□□□□ 0.53
HLA-DPA1-246ENST00000476642 SBNO1A3KN83 1393 aa18.38■□□□□ 0.53
HLA-DPA1-246ENST00000476642 RGS12O14924 1447 aa18.38■□□□□ 0.53
HLA-DPA1-246ENST00000476642 TMC1Q8TDI8 760 aa18.36■□□□□ 0.53
HLA-DPA1-246ENST00000476642 AKAP12Q02952 1782 aa18.35■□□□□ 0.53
HLA-DPA1-246ENST00000476642 ARHGEF10O15013 1369 aa18.35■□□□□ 0.53
HLA-DPA1-246ENST00000476642 HDGFL2Q7Z4V5 671 aaPredicted RBP18.35■□□□□ 0.53
HLA-DPA1-246ENST00000476642 FNBP4Q8N3X1 1017 aaPredicted RBP18.35■□□□□ 0.53
HLA-DPA1-246ENST00000476642 TERF2IPQ9NYB0 399 aa18.35■□□□□ 0.53
HLA-DPA1-246ENST00000476642 TNS3Q68CZ2 1445 aa18.34■□□□□ 0.53
HLA-DPA1-246ENST00000476642 SPATA31A3Q5VYP0 1347 aa18.34■□□□□ 0.53
HLA-DPA1-246ENST00000476642 TRPM3Q9HCF6 1732 aaPredicted RBP18.34■□□□□ 0.53
HLA-DPA1-246ENST00000476642 COL22A1Q8NFW1 1626 aaPredicted RBP18.32■□□□□ 0.52
HLA-DPA1-246ENST00000476642 USP6P35125 1406 aa18.32■□□□□ 0.52
HLA-DPA1-246ENST00000476642 PAK3O75914 559 aaPredicted RBP18.31■□□□□ 0.52
HLA-DPA1-246ENST00000476642 HAP1P54257 671 aaPredicted RBP18.31■□□□□ 0.52
HLA-DPA1-246ENST00000476642 MON2Q7Z3U7 1717 aa18.31■□□□□ 0.52
HLA-DPA1-246ENST00000476642 CPSF1Q10570 1443 aaKnown RBP18.31■□□□□ 0.52
HLA-DPA1-246ENST00000476642 KTN1Q86UP2 1357 aaKnown RBP18.3■□□□□ 0.52
HLA-DPA1-246ENST00000476642 SLC12A5Q9H2X9 1139 aa18.3■□□□□ 0.52
HLA-DPA1-246ENST00000476642 ALS2Q96Q42 1657 aa18.3■□□□□ 0.52
HLA-DPA1-246ENST00000476642 LMOD2Q6P5Q4 547 aa18.29■□□□□ 0.52
HLA-DPA1-246ENST00000476642 ATRNO75882 1429 aa18.29■□□□□ 0.52
HLA-DPA1-246ENST00000476642 TTC21AQ8NDW8 1320 aa18.28■□□□□ 0.52
HLA-DPA1-246ENST00000476642 ANKRD36BQ8N2N9 1353 aa18.28■□□□□ 0.52
HLA-DPA1-246ENST00000476642 POLR3GLQ9BT43 218 aa18.27■□□□□ 0.52
HLA-DPA1-246ENST00000476642 EDC4Q6P2E9 1401 aaKnown RBP18.26■□□□□ 0.51
HLA-DPA1-246ENST00000476642 MYOM1P52179 1685 aa18.26■□□□□ 0.51
HLA-DPA1-246ENST00000476642 CD163L1Q9NR16 1453 aa18.26■□□□□ 0.51
HLA-DPA1-246ENST00000476642 NRKQ7Z2Y5 1582 aa18.25■□□□□ 0.51
HLA-DPA1-246ENST00000476642 ABTB2Q8N961 1025 aa18.25■□□□□ 0.51
HLA-DPA1-246ENST00000476642 GJD4Q96KN9 370 aaPredicted RBP18.25■□□□□ 0.51
HLA-DPA1-246ENST00000476642 A0A1W2PP64 1363 aa18.25■□□□□ 0.51
HLA-DPA1-246ENST00000476642 SSH2Q76I76 1423 aa18.24■□□□□ 0.51
HLA-DPA1-246ENST00000476642 PLEKHG5O94827 1062 aa18.24■□□□□ 0.51
HLA-DPA1-246ENST00000476642 NLRP13Q86W25 1043 aa18.24■□□□□ 0.51
HLA-DPA1-246ENST00000476642 UNC5CLQ8IV45 518 aa18.24■□□□□ 0.51
HLA-DPA1-246ENST00000476642 BCL9LQ86UU0 1499 aa18.24■□□□□ 0.51
HLA-DPA1-246ENST00000476642 TTC21BQ7Z4L5 1316 aa18.23■□□□□ 0.51
HLA-DPA1-246ENST00000476642 KIF7Q2M1P5 1343 aa18.22■□□□□ 0.51
HLA-DPA1-246ENST00000476642 CCDC125Q86Z20 511 aa18.21■□□□□ 0.51
HLA-DPA1-246ENST00000476642 MARF1Q9Y4F3 1742 aaKnown RBP18.2■□□□□ 0.5
HLA-DPA1-246ENST00000476642 C11orf95C9JLR9 678 aaPredicted RBP18.2■□□□□ 0.5
HLA-DPA1-246ENST00000476642 NLRP6P59044 892 aa18.2■□□□□ 0.5
HLA-DPA1-246ENST00000476642 ABCA3Q99758 1704 aa18.2■□□□□ 0.5
HLA-DPA1-246ENST00000476642 CCDC7Q96M83 1385 aa18.19■□□□□ 0.5
HLA-DPA1-246ENST00000476642 PIK3C2AO00443 1686 aa18.19■□□□□ 0.5
HLA-DPA1-246ENST00000476642 CCDC9Q9Y3X0 531 aaKnown RBP18.19■□□□□ 0.5
HLA-DPA1-246ENST00000476642 CABLES1Q8TDN4 633 aa18.18■□□□□ 0.5
HLA-DPA1-246ENST00000476642 ZRANB1Q9UGI0 708 aa18.18■□□□□ 0.5
HLA-DPA1-246ENST00000476642 USP54Q70EL1 1684 aa18.18■□□□□ 0.5
HLA-DPA1-246ENST00000476642 CRYBG1Q9Y4K1 1723 aa18.18■□□□□ 0.5
HLA-DPA1-246ENST00000476642 PHRF1Q9P1Y6 1649 aaKnown RBP18.17■□□□□ 0.5
HLA-DPA1-246ENST00000476642 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.17■□□□□ 0.5
HLA-DPA1-246ENST00000476642 KCNH5Q8NCM2 988 aa18.17■□□□□ 0.5
HLA-DPA1-246ENST00000476642 SLIT2O94813 1529 aa18.17■□□□□ 0.5
HLA-DPA1-246ENST00000476642 USP31Q70CQ4 1352 aa18.17■□□□□ 0.5
HLA-DPA1-246ENST00000476642 USP19O94966 1318 aa18.16■□□□□ 0.5
HLA-DPA1-246ENST00000476642 WASHC2AQ641Q2 1341 aa18.16■□□□□ 0.5
HLA-DPA1-246ENST00000476642 KIF20BQ96Q89 1820 aa18.16■□□□□ 0.5
HLA-DPA1-246ENST00000476642 NUTM2GQ5VZR2 741 aa18.15■□□□□ 0.5
HLA-DPA1-246ENST00000476642 NSD3Q9BZ95 1437 aa18.15■□□□□ 0.5
HLA-DPA1-246ENST00000476642 SF3B2Q13435 895 aaKnown RBP18.14■□□□□ 0.49
HLA-DPA1-246ENST00000476642 PANK3Q9H999 370 aa18.14■□□□□ 0.49
HLA-DPA1-246ENST00000476642 CGNL1Q0VF96 1302 aa18.14■□□□□ 0.49
HLA-DPA1-246ENST00000476642 SLIT3O75094 1523 aa18.13■□□□□ 0.49
HLA-DPA1-246ENST00000476642 VPS72Q15906 364 aa18.13■□□□□ 0.49
HLA-DPA1-246ENST00000476642 COG3Q96JB2 828 aa18.13■□□□□ 0.49
HLA-DPA1-246ENST00000476642 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.12■□□□□ 0.49
HLA-DPA1-246ENST00000476642 A0A0G2JS52 829 aa18.12■□□□□ 0.49
HLA-DPA1-246ENST00000476642 GCP02774 474 aa18.12■□□□□ 0.49
HLA-DPA1-246ENST00000476642 MYT1Q01538 1121 aa18.12■□□□□ 0.49
HLA-DPA1-246ENST00000476642 NME9Q86XW9 330 aa18.12■□□□□ 0.49
HLA-DPA1-246ENST00000476642 SEPT12Q8IYM1 358 aa18.12■□□□□ 0.49
HLA-DPA1-246ENST00000476642 CARD14Q9BXL6 1004 aa18.11■□□□□ 0.49
HLA-DPA1-246ENST00000476642 KNSTRNQ9Y448 316 aa18.11■□□□□ 0.49
HLA-DPA1-246ENST00000476642 COL14A1Q05707 1796 aaKnown RBP18.11■□□□□ 0.49
HLA-DPA1-246ENST00000476642 OVOS2A0A0J9YW53 1432 aa18.1■□□□□ 0.49
HLA-DPA1-246ENST00000476642 OVOS2Q6IE36 1432 aa18.1■□□□□ 0.49
HLA-DPA1-246ENST00000476642 CPDO75976 1380 aa18.1■□□□□ 0.49
HLA-DPA1-246ENST00000476642 NSD2O96028 1365 aa18.1■□□□□ 0.49
HLA-DPA1-246ENST00000476642 NWD2Q9ULI1 1742 aa18.09■□□□□ 0.49
HLA-DPA1-246ENST00000476642 GLI3P10071 1580 aa18.09■□□□□ 0.49
HLA-DPA1-246ENST00000476642 FYB1O15117 783 aa18.09■□□□□ 0.49
HLA-DPA1-246ENST00000476642 PRDM11Q9NQV5 511 aa18.09■□□□□ 0.49
HLA-DPA1-246ENST00000476642 BLMP54132 1417 aaPredicted RBP18.08■□□□□ 0.49
HLA-DPA1-246ENST00000476642 FAM83GA6ND36 823 aa18.08■□□□□ 0.48
HLA-DPA1-246ENST00000476642 ANKRD26Q9UPS8 1709 aa18.08■□□□□ 0.48
HLA-DPA1-246ENST00000476642 ZC3H6P61129 1189 aaKnown RBP18.07■□□□□ 0.48
HLA-DPA1-246ENST00000476642 KRT27Q7Z3Y8 459 aa18.07■□□□□ 0.48
HLA-DPA1-246ENST00000476642 KIAA0232Q92628 1395 aa18.06■□□□□ 0.48
HLA-DPA1-246ENST00000476642 PLCH1Q4KWH8 1693 aa18.06■□□□□ 0.48
HLA-DPA1-246ENST00000476642 GGNBP2Q9H3C7 697 aa18.06■□□□□ 0.48
HLA-DPA1-246ENST00000476642 BTG4Q9NY30 223 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms