RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 NRKQ7Z2Y5 1582 aa23.69■■□□□ 1.38
SCAF11-206ENST00000474828 SLC12A5Q9H2X9 1139 aa23.69■■□□□ 1.38
SCAF11-206ENST00000474828 MON2Q7Z3U7 1717 aa23.69■■□□□ 1.38
SCAF11-206ENST00000474828 CRYBG1Q9Y4K1 1723 aa23.67■■□□□ 1.38
SCAF11-206ENST00000474828 RGS17Q9UGC6 210 aaPredicted RBP23.66■■□□□ 1.38
SCAF11-206ENST00000474828 MYOM1P52179 1685 aa23.65■■□□□ 1.38
SCAF11-206ENST00000474828 A0A1W2PP64 1363 aa23.65■■□□□ 1.38
SCAF11-206ENST00000474828 ANKRD36BQ8N2N9 1353 aa23.65■■□□□ 1.38
SCAF11-206ENST00000474828 TERF2IPQ9NYB0 399 aa23.64■■□□□ 1.37
SCAF11-206ENST00000474828 ABCA3Q99758 1704 aa23.64■■□□□ 1.37
SCAF11-206ENST00000474828 KTN1Q86UP2 1357 aaKnown RBP23.64■■□□□ 1.37
SCAF11-206ENST00000474828 TTC21BQ7Z4L5 1316 aa23.63■■□□□ 1.37
SCAF11-206ENST00000474828 TTC21AQ8NDW8 1320 aa23.63■■□□□ 1.37
SCAF11-206ENST00000474828 C11orf95C9JLR9 678 aaPredicted RBP23.63■■□□□ 1.37
SCAF11-206ENST00000474828 EDC4Q6P2E9 1401 aaKnown RBP23.63■■□□□ 1.37
SCAF11-206ENST00000474828 USP19O94966 1318 aa23.62■■□□□ 1.37
SCAF11-206ENST00000474828 ZEB1P37275 1124 aaPredicted RBP23.61■■□□□ 1.37
SCAF11-206ENST00000474828 TMC1Q8TDI8 760 aa23.61■■□□□ 1.37
SCAF11-206ENST00000474828 PIK3C2AO00443 1686 aa23.6■■□□□ 1.37
SCAF11-206ENST00000474828 HDGFL2Q7Z4V5 671 aaPredicted RBP23.6■■□□□ 1.37
SCAF11-206ENST00000474828 USP54Q70EL1 1684 aa23.6■■□□□ 1.37
SCAF11-206ENST00000474828 PAK3O75914 559 aaPredicted RBP23.59■■□□□ 1.37
SCAF11-206ENST00000474828 USP31Q70CQ4 1352 aa23.59■■□□□ 1.37
SCAF11-206ENST00000474828 MARF1Q9Y4F3 1742 aaKnown RBP23.57■■□□□ 1.36
SCAF11-206ENST00000474828 ABTB2Q8N961 1025 aa23.57■■□□□ 1.36
SCAF11-206ENST00000474828 SLIT3O75094 1523 aa23.57■■□□□ 1.36
SCAF11-206ENST00000474828 NUTM2BA6NNL0 878 aaPredicted RBP23.56■■□□□ 1.36
SCAF11-206ENST00000474828 NUTM2EB1AL46 878 aaPredicted RBP23.56■■□□□ 1.36
SCAF11-206ENST00000474828 NUTM2AQ8IVF1 878 aaPredicted RBP23.56■■□□□ 1.36
SCAF11-206ENST00000474828 PHRF1Q9P1Y6 1649 aaKnown RBP23.55■■□□□ 1.36
SCAF11-206ENST00000474828 NLRP13Q86W25 1043 aa23.55■■□□□ 1.36
SCAF11-206ENST00000474828 FNBP4Q8N3X1 1017 aaPredicted RBP23.55■■□□□ 1.36
SCAF11-206ENST00000474828 CABLES1Q8TDN4 633 aa23.55■■□□□ 1.36
SCAF11-206ENST00000474828 KIF7Q2M1P5 1343 aa23.55■■□□□ 1.36
SCAF11-206ENST00000474828 LMOD2Q6P5Q4 547 aa23.54■■□□□ 1.36
SCAF11-206ENST00000474828 POTEAQ6S8J7 498 aa23.54■■□□□ 1.36
SCAF11-206ENST00000474828 CARD14Q9BXL6 1004 aa23.52■■□□□ 1.36
SCAF11-206ENST00000474828 SLIT2O94813 1529 aa23.52■■□□□ 1.36
SCAF11-206ENST00000474828 CPDO75976 1380 aa23.52■■□□□ 1.36
SCAF11-206ENST00000474828 OVOS2A0A0J9YW53 1432 aa23.5■■□□□ 1.35
SCAF11-206ENST00000474828 OVOS2Q6IE36 1432 aa23.5■■□□□ 1.35
SCAF11-206ENST00000474828 ADAMTS2O95450 1211 aa23.5■■□□□ 1.35
SCAF11-206ENST00000474828 NLRP6P59044 892 aa23.49■■□□□ 1.35
SCAF11-206ENST00000474828 CCDC7Q96M83 1385 aa23.49■■□□□ 1.35
SCAF11-206ENST00000474828 GCP02774 474 aa23.48■■□□□ 1.35
SCAF11-206ENST00000474828 MEX3CQ5U5Q3 659 aaKnown RBP23.48■■□□□ 1.35
SCAF11-206ENST00000474828 NUTM2GQ5VZR2 741 aa23.48■■□□□ 1.35
SCAF11-206ENST00000474828 WASHC2AQ641Q2 1341 aa23.48■■□□□ 1.35
SCAF11-206ENST00000474828 BCL9LQ86UU0 1499 aa23.48■■□□□ 1.35
SCAF11-206ENST00000474828 NME9Q86XW9 330 aa23.47■■□□□ 1.35
SCAF11-206ENST00000474828 NFAT5O94916 1531 aa23.46■■□□□ 1.35
SCAF11-206ENST00000474828 AFF2P51816 1311 aa23.46■■□□□ 1.35
SCAF11-206ENST00000474828 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.46■■□□□ 1.356e-6■■□□□ 14.4
SCAF11-206ENST00000474828 C8orf37Q96NL8 207 aa23.46■■□□□ 1.35
SCAF11-206ENST00000474828 COL14A1Q05707 1796 aaKnown RBP23.45■■□□□ 1.34
SCAF11-206ENST00000474828 FAM83GA6ND36 823 aa23.45■■□□□ 1.34
SCAF11-206ENST00000474828 FYB1O15117 783 aa23.45■■□□□ 1.34
SCAF11-206ENST00000474828 ZNF772Q68DY9 489 aaPredicted RBP23.45■■□□□ 1.34
SCAF11-206ENST00000474828 NGLY1Q96IV0 654 aa23.45■■□□□ 1.34
SCAF11-206ENST00000474828 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.45■■□□□ 1.34
SCAF11-206ENST00000474828 NWD2Q9ULI1 1742 aa23.45■■□□□ 1.34
SCAF11-206ENST00000474828 KCNH5Q8NCM2 988 aa23.44■■□□□ 1.34
SCAF11-206ENST00000474828 NSD3Q9BZ95 1437 aa23.43■■□□□ 1.34
SCAF11-206ENST00000474828 KIAA0232Q92628 1395 aa23.43■■□□□ 1.34
SCAF11-206ENST00000474828 ZRANB1Q9UGI0 708 aa23.43■■□□□ 1.34
SCAF11-206ENST00000474828 LMO7Q8WWI1 1683 aa23.42■■□□□ 1.34
SCAF11-206ENST00000474828 HAP1P54257 671 aaPredicted RBP23.42■■□□□ 1.34
SCAF11-206ENST00000474828 PANK3Q9H999 370 aa23.42■■□□□ 1.34
SCAF11-206ENST00000474828 PLCH1Q4KWH8 1693 aa23.41■■□□□ 1.34
SCAF11-206ENST00000474828 ABCC6O95255 1503 aa23.4■■□□□ 1.34
SCAF11-206ENST00000474828 ARHGEF25Q86VW2 580 aa23.4■■□□□ 1.34
SCAF11-206ENST00000474828 ATRNO75882 1429 aa23.4■■□□□ 1.34
SCAF11-206ENST00000474828 AATKQ6ZMQ8 1374 aa23.4■■□□□ 1.34
SCAF11-206ENST00000474828 NRAPQ86VF7 1730 aa23.39■■□□□ 1.34
SCAF11-206ENST00000474828 COL18A1P39060 1754 aa23.38■■□□□ 1.33
SCAF11-206ENST00000474828 PER1O15534 1290 aaPredicted RBP23.38■■□□□ 1.33
SCAF11-206ENST00000474828 UNC5CLQ8IV45 518 aa23.38■■□□□ 1.33
SCAF11-206ENST00000474828 PRDM11Q9NQV5 511 aa23.38■■□□□ 1.33
SCAF11-206ENST00000474828 USP21Q9UK80 565 aa23.38■■□□□ 1.33
SCAF11-206ENST00000474828 KIF20BQ96Q89 1820 aa23.38■■□□□ 1.33
SCAF11-206ENST00000474828 CGNL1Q0VF96 1302 aa23.37■■□□□ 1.33
SCAF11-206ENST00000474828 POLR3GLQ9BT43 218 aa23.37■■□□□ 1.33
SCAF11-206ENST00000474828 ZC3H6P61129 1189 aaKnown RBP23.36■■□□□ 1.33
SCAF11-206ENST00000474828 COG3Q96JB2 828 aa23.36■■□□□ 1.33
SCAF11-206ENST00000474828 CAMTA1Q9Y6Y1 1673 aa23.35■■□□□ 1.33
SCAF11-206ENST00000474828 NSD2O96028 1365 aa23.35■■□□□ 1.33
SCAF11-206ENST00000474828 PLEKHG5O94827 1062 aa23.34■■□□□ 1.33
SCAF11-206ENST00000474828 TRPC5Q9UL62 973 aaPredicted RBP23.34■■□□□ 1.33
SCAF11-206ENST00000474828 CDK12Q9NYV4 1490 aaPredicted RBP23.33■■□□□ 1.33
SCAF11-206ENST00000474828 VPS72Q15906 364 aa23.33■■□□□ 1.33
SCAF11-206ENST00000474828 GGNBP2Q9H3C7 697 aa23.33■■□□□ 1.33
SCAF11-206ENST00000474828 QTRT2Q9H974 415 aaKnown RBP23.33■■□□□ 1.33
SCAF11-206ENST00000474828 BTG4Q9NY30 223 aa23.33■■□□□ 1.33
SCAF11-206ENST00000474828 NPC1L1Q9UHC9 1359 aa23.31■■□□□ 1.32
SCAF11-206ENST00000474828 CHRNA2Q15822 529 aa23.31■■□□□ 1.32
SCAF11-206ENST00000474828 AMER1Q5JTC6 1135 aaPredicted RBP23.31■■□□□ 1.32
SCAF11-206ENST00000474828 ANKRD26Q9UPS8 1709 aa23.3■■□□□ 1.32
SCAF11-206ENST00000474828 COL5A2P05997 1499 aaPredicted RBP23.3■■□□□ 1.32
SCAF11-206ENST00000474828 RBM6P78332 1123 aaKnown RBP23.29■■□□□ 1.32
SCAF11-206ENST00000474828 KIF24Q5T7B8 1368 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms