RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 TXNDC2Q86VQ3 553 aa12.89□□□□□ -0.35
USP39-214ENST00000474572 WWC1Q8IX03 1113 aa12.89□□□□□ -0.35
USP39-214ENST00000474572 EXOC6Q8TAG9 804 aa12.89□□□□□ -0.35
USP39-214ENST00000474572 CCDC136Q96JN2 1154 aa12.89□□□□□ -0.35
USP39-214ENST00000474572 TBX22Q9Y458 520 aa12.89□□□□□ -0.35
USP39-214ENST00000474572 CDK12Q9NYV4 1490 aaPredicted RBP12.89□□□□□ -0.35
USP39-214ENST00000474572 WDR63Q8IWG1 891 aa12.88□□□□□ -0.35
USP39-214ENST00000474572 CCDC61Q9Y6R9 512 aa12.88□□□□□ -0.35
USP39-214ENST00000474572 PRR36Q9H6K5 1346 aa12.88□□□□□ -0.35
USP39-214ENST00000474572 PIK3R4Q99570 1358 aa12.87□□□□□ -0.35
USP39-214ENST00000474572 TCP11L2Q8N4U5 519 aa12.87□□□□□ -0.35
USP39-214ENST00000474572 NUDT16Q96DE0 195 aaKnown RBP12.87□□□□□ -0.35
USP39-214ENST00000474572 PLEKHF1Q96S99 279 aa12.87□□□□□ -0.35
USP39-214ENST00000474572 DMRT2Q9Y5R5 561 aa12.87□□□□□ -0.35
USP39-214ENST00000474572 EID1Q9Y6B2 187 aa12.87□□□□□ -0.35
USP39-214ENST00000474572 LRRC7Q96NW7 1537 aa12.87□□□□□ -0.35
USP39-214ENST00000474572 USP54Q70EL1 1684 aa12.86□□□□□ -0.35
USP39-214ENST00000474572 RBM19Q9Y4C8 960 aaKnown RBP12.86□□□□□ -0.35
USP39-214ENST00000474572 THEMISQ8N1K5 641 aaPredicted RBP12.85□□□□□ -0.35
USP39-214ENST00000474572 OVOS2A0A0J9YW53 1432 aa12.85□□□□□ -0.35
USP39-214ENST00000474572 OVOS2Q6IE36 1432 aa12.85□□□□□ -0.35
USP39-214ENST00000474572 SSH2Q76I76 1423 aa12.85□□□□□ -0.35
USP39-214ENST00000474572 CHD2O14647 1828 aaKnown RBP12.85□□□□□ -0.35
USP39-214ENST00000474572 FMN2Q9NZ56 1722 aa12.85□□□□□ -0.35
USP39-214ENST00000474572 PLEKHG3A1L390 1219 aa12.84□□□□□ -0.35
USP39-214ENST00000474572 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.84□□□□□ -0.35
USP39-214ENST00000474572 CRBNQ96SW2 442 aa12.84□□□□□ -0.35
USP39-214ENST00000474572 ZNF692Q9BU19 519 aaPredicted RBP12.84□□□□□ -0.35
USP39-214ENST00000474572 USP6P35125 1406 aa12.83□□□□□ -0.36
USP39-214ENST00000474572 PLIN1O60240 522 aa12.83□□□□□ -0.36
USP39-214ENST00000474572 U2AF1L5P0DN76 240 aaPredicted RBP12.83□□□□□ -0.36
USP39-214ENST00000474572 U2AF1Q01081 240 aaKnown RBP eCLIP12.83□□□□□ -0.36
USP39-214ENST00000474572 POLKQ9UBT6 870 aa12.83□□□□□ -0.36
USP39-214ENST00000474572 DIAPH1O60610 1272 aaKnown RBP12.82□□□□□ -0.36
USP39-214ENST00000474572 TRHP20396 242 aaPredicted RBP12.82□□□□□ -0.36
USP39-214ENST00000474572 RGPD1P0DJD0 1748 aa12.82□□□□□ -0.36
USP39-214ENST00000474572 RGPD8O14715 1765 aaPredicted RBP12.81□□□□□ -0.36
USP39-214ENST00000474572 ANKARQ7Z5J8 1434 aa12.81□□□□□ -0.36
USP39-214ENST00000474572 C20orf194Q5TEA3 1177 aa12.81□□□□□ -0.36
USP39-214ENST00000474572 PNNQ9H307 717 aaKnown RBP12.81□□□□□ -0.36
USP39-214ENST00000474572 IL16Q14005 1332 aa12.81□□□□□ -0.36
USP39-214ENST00000474572 TMPOP42166 694 aaKnown RBP12.8□□□□□ -0.36
USP39-214ENST00000474572 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP39-214ENST00000474572 SLC26A8Q96RN1 970 aa12.8□□□□□ -0.36
USP39-214ENST00000474572 AMOTL2Q9Y2J4 779 aa12.8□□□□□ -0.36
USP39-214ENST00000474572 USP31Q70CQ4 1352 aa12.8□□□□□ -0.36
USP39-214ENST00000474572 MARF1Q9Y4F3 1742 aaKnown RBP12.79□□□□□ -0.36
USP39-214ENST00000474572 NME9Q86XW9 330 aa12.79□□□□□ -0.36
USP39-214ENST00000474572 RRP7AQ9Y3A4 280 aaKnown RBP12.79□□□□□ -0.36
USP39-214ENST00000474572 SETD1BQ9UPS6 1966 aaKnown RBP12.79□□□□□ -0.36
USP39-214ENST00000474572 NCKAP5LQ9HCH0 1330 aa12.79□□□□□ -0.36
USP39-214ENST00000474572 PEAK1Q9H792 1746 aa12.79□□□□□ -0.36
USP39-214ENST00000474572 PIK3C2AO00443 1686 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 FCHSD2O94868 740 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 CT47B1P0C2W7 299 aaPredicted RBP12.78□□□□□ -0.36
USP39-214ENST00000474572 PDE3AQ14432 1141 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 RSPH6AQ9H0K4 717 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 TRIM35Q9UPQ4 493 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 TTC21BQ7Z4L5 1316 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 KDM2BQ8NHM5 1336 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 FANCIQ9NVI1 1328 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 DLG5Q8TDM6 1919 aa12.78□□□□□ -0.36
USP39-214ENST00000474572 U2SURPO15042 1029 aaKnown RBP12.77□□□□□ -0.37
USP39-214ENST00000474572 COG3Q96JB2 828 aa12.77□□□□□ -0.37
USP39-214ENST00000474572 MYH16Q9H6N6 1097 aa12.77□□□□□ -0.37
USP39-214ENST00000474572 ACEP12821 1306 aa12.77□□□□□ -0.37
USP39-214ENST00000474572 MAPK8IP3Q9UPT6 1336 aa12.77□□□□□ -0.37
USP39-214ENST00000474572 NWD1Q149M9 1564 aa12.77□□□□□ -0.37
USP39-214ENST00000474572 BCAR3O75815 825 aa12.76□□□□□ -0.37
USP39-214ENST00000474572 IL13P35225 146 aa12.76□□□□□ -0.37
USP39-214ENST00000474572 RARSP54136 660 aaKnown RBP12.76□□□□□ -0.37
USP39-214ENST00000474572 TTC21AQ8NDW8 1320 aa12.76□□□□□ -0.37
USP39-214ENST00000474572 NEUROD2Q15784 382 aa12.75□□□□□ -0.37
USP39-214ENST00000474572 ZRANB1Q9UGI0 708 aa12.75□□□□□ -0.37
USP39-214ENST00000474572 EMILIN1Q9Y6C2 1016 aa12.75□□□□□ -0.37
USP39-214ENST00000474572 TCERG1O14776 1098 aaKnown RBP12.74□□□□□ -0.37
USP39-214ENST00000474572 MS4A1P11836 297 aa12.73□□□□□ -0.37
USP39-214ENST00000474572 FBLN1P23142 703 aa12.72□□□□□ -0.37
USP39-214ENST00000474572 AAMPQ13685 434 aa12.72□□□□□ -0.37
USP39-214ENST00000474572 CENPQQ7L2Z9 268 aaPredicted RBP12.72□□□□□ -0.37
USP39-214ENST00000474572 PRKAR2BP31323 418 aa12.71□□□□□ -0.37
USP39-214ENST00000474572 RIPK4P57078 832 aa12.71□□□□□ -0.37
USP39-214ENST00000474572 NFE2L2Q16236 605 aa12.71□□□□□ -0.37
USP39-214ENST00000474572 KCNA6P17658 529 aa12.7□□□□□ -0.38
USP39-214ENST00000474572 ANKLE2Q86XL3 938 aa12.7□□□□□ -0.38
USP39-214ENST00000474572 ADGRL3Q9HAR2 1447 aa12.7□□□□□ -0.38
USP39-214ENST00000474572 NPHP4O75161 1426 aaPredicted RBP12.69□□□□□ -0.38
USP39-214ENST00000474572 KIF24Q5T7B8 1368 aa12.69□□□□□ -0.38
USP39-214ENST00000474572 VIRMAQ69YN4 1812 aaKnown RBP12.68□□□□□ -0.38
USP39-214ENST00000474572 RRS1Q15050 365 aaKnown RBP12.68□□□□□ -0.38
USP39-214ENST00000474572 PHRF1Q9P1Y6 1649 aaKnown RBP12.68□□□□□ -0.38
USP39-214ENST00000474572 SBNO1A3KN83 1393 aa12.68□□□□□ -0.38
USP39-214ENST00000474572 PPM1GO15355 546 aaPredicted RBP12.67□□□□□ -0.38
USP39-214ENST00000474572 NEFMP07197 916 aa12.67□□□□□ -0.38
USP39-214ENST00000474572 EXOSC9Q06265 439 aaKnown RBP12.67□□□□□ -0.38
USP39-214ENST00000474572 EIF4A2Q14240 407 aaKnown RBP12.67□□□□□ -0.38
USP39-214ENST00000474572 PLPPR3Q6T4P5 718 aa12.67□□□□□ -0.38
USP39-214ENST00000474572 TSR2Q969E8 191 aaKnown RBP12.67□□□□□ -0.38
USP39-214ENST00000474572 PHACTR3Q96KR7 559 aa12.67□□□□□ -0.38
USP39-214ENST00000474572 ARHGEF10O15013 1369 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms