RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MPNDQ8N594 471 aa9.87□□□□□ -0.83
CCDC88A-212ENST00000474059 F12P00748 615 aaPredicted RBP9.86□□□□□ -0.83
CCDC88A-212ENST00000474059 GJA5P36382 358 aa9.86□□□□□ -0.83
CCDC88A-212ENST00000474059 LYPD8Q6UX82 237 aa9.86□□□□□ -0.83
CCDC88A-212ENST00000474059 NXF1Q9UBU9 619 aaKnown RBP9.86□□□□□ -0.83
CCDC88A-212ENST00000474059 SPTLC1O15269 473 aa9.85□□□□□ -0.83
CCDC88A-212ENST00000474059 GMPRP36959 345 aa9.85□□□□□ -0.83
CCDC88A-212ENST00000474059 ZFP42Q96MM3 310 aa9.85□□□□□ -0.83
CCDC88A-212ENST00000474059 ERBB4Q15303 1308 aa9.84□□□□□ -0.83
CCDC88A-212ENST00000474059 SPDYE5A6NIY4 337 aa9.84□□□□□ -0.83
CCDC88A-212ENST00000474059 TIMP2P16035 220 aa9.84□□□□□ -0.83
CCDC88A-212ENST00000474059 VARSP26640 1264 aaKnown RBP9.84□□□□□ -0.83
CCDC88A-212ENST00000474059 VEGFBP49765 207 aa9.84□□□□□ -0.83
CCDC88A-212ENST00000474059 NNTQ13423 1086 aa9.84□□□□□ -0.83
CCDC88A-212ENST00000474059 C4orf48Q5BLP8 95 aa9.84□□□□□ -0.83
CCDC88A-212ENST00000474059 MAP10Q9P2G4 905 aa9.84□□□□□ -0.83
CCDC88A-212ENST00000474059 TRIM66O15016 1216 aa9.83□□□□□ -0.84
CCDC88A-212ENST00000474059 HRCP23327 699 aa9.83□□□□□ -0.84
CCDC88A-212ENST00000474059 FOXJ1Q92949 421 aa9.83□□□□□ -0.84
CCDC88A-212ENST00000474059 H3BM21 787 aa9.82□□□□□ -0.84
CCDC88A-212ENST00000474059 CABLES1Q8TDN4 633 aa9.82□□□□□ -0.84
CCDC88A-212ENST00000474059 PER1O15534 1290 aaPredicted RBP9.81□□□□□ -0.84
CCDC88A-212ENST00000474059 CDK15Q96Q40 435 aa9.8□□□□□ -0.84
CCDC88A-212ENST00000474059 SOBPA7XYQ1 873 aa9.79□□□□□ -0.84
CCDC88A-212ENST00000474059 MRPL14Q6P1L8 145 aaKnown RBP9.79□□□□□ -0.84
CCDC88A-212ENST00000474059 NPAS3Q8IXF0 933 aa9.79□□□□□ -0.84
CCDC88A-212ENST00000474059 ADH1CP00326 375 aa9.78□□□□□ -0.84
CCDC88A-212ENST00000474059 NR3C2P08235 984 aa9.78□□□□□ -0.84
CCDC88A-212ENST00000474059 WDR4P57081 412 aaKnown RBP9.78□□□□□ -0.84
CCDC88A-212ENST00000474059 LIMD1Q9UGP4 676 aa9.78□□□□□ -0.84
CCDC88A-212ENST00000474059 CTHP32929 405 aa9.77□□□□□ -0.85
CCDC88A-212ENST00000474059 PLEKHG3A1L390 1219 aa9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 GRM5P41594 1212 aa9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 QPCTQ16769 361 aa9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 PRPF38BQ5VTL8 546 aaKnown RBP9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 RIC3Q7Z5B4 369 aa9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 SLC16A10Q8TF71 515 aa9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 PURBQ96QR8 312 aaKnown RBP9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 ZBTB3Q9H5J0 574 aa9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 ZFAND3Q9H8U3 227 aa9.76□□□□□ -0.85
CCDC88A-212ENST00000474059 MYSM1Q5VVJ2 828 aa9.74□□□□□ -0.85
CCDC88A-212ENST00000474059 FAM174AQ8TBP5 190 aa9.74□□□□□ -0.85
CCDC88A-212ENST00000474059 IRF7Q92985 503 aa9.74□□□□□ -0.85
CCDC88A-212ENST00000474059 ITPKCQ96DU7 683 aa9.74□□□□□ -0.85
CCDC88A-212ENST00000474059 C1QTNF2Q9BXJ5 285 aa9.73□□□□□ -0.85
CCDC88A-212ENST00000474059 DIXDC1Q155Q3 683 aa9.72□□□□□ -0.85
CCDC88A-212ENST00000474059 CSPP1Q1MSJ5 1256 aa9.72□□□□□ -0.85
CCDC88A-212ENST00000474059 SH3RF1Q7Z6J0 888 aa9.72□□□□□ -0.85
CCDC88A-212ENST00000474059 LILRB3O75022 631 aa9.71□□□□□ -0.86
CCDC88A-212ENST00000474059 VSIG8P0DPA2 414 aa9.71□□□□□ -0.86
CCDC88A-212ENST00000474059 ZSCAN1Q8NBB4 408 aa9.71□□□□□ -0.86
CCDC88A-212ENST00000474059 AK7Q96M32 723 aa9.71□□□□□ -0.86
CCDC88A-212ENST00000474059 ZIC2O95409 532 aaPredicted RBP9.7□□□□□ -0.86
CCDC88A-212ENST00000474059 TUSC1Q2TAM9 212 aa9.7□□□□□ -0.86
CCDC88A-212ENST00000474059 RTL5Q5HYW3 569 aaPredicted RBP9.69□□□□□ -0.86
CCDC88A-212ENST00000474059 PDE4DQ08499 809 aa9.68□□□□□ -0.86
CCDC88A-212ENST00000474059 ARID5BQ14865 1188 aa9.68□□□□□ -0.86
CCDC88A-212ENST00000474059 SH3BP5LQ7L8J4 393 aa9.68□□□□□ -0.86
CCDC88A-212ENST00000474059 NR5A1Q13285 461 aa9.67□□□□□ -0.86
CCDC88A-212ENST00000474059 SCARF1Q14162 830 aa9.67□□□□□ -0.86
CCDC88A-212ENST00000474059 MEIOBQ8N635 442 aa9.67□□□□□ -0.86
CCDC88A-212ENST00000474059 FBXO31Q5XUX0 539 aaPredicted RBP9.66□□□□□ -0.86
CCDC88A-212ENST00000474059 C6orf118Q5T5N4 469 aa9.65□□□□□ -0.86
CCDC88A-212ENST00000474059 BPHLQ86WA6 291 aaPredicted RBP9.65□□□□□ -0.86
CCDC88A-212ENST00000474059 TRMT44Q8IYL2 757 aaKnown RBP9.64□□□□□ -0.87
CCDC88A-212ENST00000474059 LINC00528Q8N1L1 170 aa9.64□□□□□ -0.87
CCDC88A-212ENST00000474059 SOS2Q07890 1332 aaPredicted RBP9.63□□□□□ -0.87
CCDC88A-212ENST00000474059 LOC100996750A0A140TA64 210 aa9.63□□□□□ -0.87
CCDC88A-212ENST00000474059 FSHRP23945 695 aa9.63□□□□□ -0.87
CCDC88A-212ENST00000474059 KRTAP4-6Q9BYQ5 205 aa9.63□□□□□ -0.87
CCDC88A-212ENST00000474059 DNMT3LQ9UJW3 386 aa9.63□□□□□ -0.87
CCDC88A-212ENST00000474059 MAP4K5Q9Y4K4 846 aa9.63□□□□□ -0.87
CCDC88A-212ENST00000474059 PPFIA3O75145 1194 aa9.62□□□□□ -0.87
CCDC88A-212ENST00000474059 AGERQ15109 404 aa9.61□□□□□ -0.87
CCDC88A-212ENST00000474059 TSC1Q92574 1164 aa9.61□□□□□ -0.87
CCDC88A-212ENST00000474059 SLC24A3Q9HC58 644 aa9.61□□□□□ -0.87
CCDC88A-212ENST00000474059 NUTM2BA6NNL0 878 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-212ENST00000474059 NUTM2EB1AL46 878 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-212ENST00000474059 NUTM2DQ5VT03 806 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-212ENST00000474059 NUTM2AQ8IVF1 878 aaPredicted RBP9.6□□□□□ -0.87
CCDC88A-212ENST00000474059 CLK2P49760 499 aaKnown RBP9.59□□□□□ -0.87
CCDC88A-212ENST00000474059 KRT76Q01546 638 aa9.59□□□□□ -0.87
CCDC88A-212ENST00000474059 MAN1A2O60476 641 aa9.58□□□□□ -0.88
CCDC88A-212ENST00000474059 BMP2P12643 396 aa9.58□□□□□ -0.88
CCDC88A-212ENST00000474059 GSK3AP49840 483 aa9.58□□□□□ -0.88
CCDC88A-212ENST00000474059 ERFEQ4G0M1 354 aa9.58□□□□□ -0.88
CCDC88A-212ENST00000474059 FAM181BA6NEQ2 426 aa9.57□□□□□ -0.88
CCDC88A-212ENST00000474059 CTDSPL2Q05D32 466 aa9.57□□□□□ -0.88
CCDC88A-212ENST00000474059 NBPF14Q5TI25 921 aa9.57□□□□□ -0.88
CCDC88A-212ENST00000474059 VASH1Q7L8A9 365 aaPredicted RBP9.57□□□□□ -0.88
CCDC88A-212ENST00000474059 GPR161Q8N6U8 529 aaKnown RBP9.57□□□□□ -0.88
CCDC88A-212ENST00000474059 ARMC2Q8NEN0 867 aa9.57□□□□□ -0.88
CCDC88A-212ENST00000474059 OCSTAMPQ9BR26 566 aa9.57□□□□□ -0.88
CCDC88A-212ENST00000474059 MAGEB6P1A0A0J9YX57 407 aa9.56□□□□□ -0.88
CCDC88A-212ENST00000474059 CCDC116Q8IYX3 515 aa9.56□□□□□ -0.88
CCDC88A-212ENST00000474059 CBLBQ13191 982 aa9.55□□□□□ -0.88
CCDC88A-212ENST00000474059 HELBQ8NG08 1087 aaPredicted RBP9.55□□□□□ -0.88
CCDC88A-212ENST00000474059 LRRN4Q8WUT4 740 aa9.55□□□□□ -0.88
CCDC88A-212ENST00000474059 POLR3EQ9NVU0 708 aa9.55□□□□□ -0.88
CCDC88A-212ENST00000474059 Q6ZVU0 165 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 174.1 ms