RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 KTN1Q86UP2 1357 aaKnown RBP20.5■□□□□ 0.87
COL9A3-209ENST00000469852 POTEAQ6S8J7 498 aa20.5■□□□□ 0.87
COL9A3-209ENST00000469852 ALS2Q96Q42 1657 aa20.5■□□□□ 0.87
COL9A3-209ENST00000469852 HDGFL2Q7Z4V5 671 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-209ENST00000469852 CARD14Q9BXL6 1004 aa20.48■□□□□ 0.87
COL9A3-209ENST00000469852 TERF2IPQ9NYB0 399 aa20.48■□□□□ 0.87
COL9A3-209ENST00000469852 TNS3Q68CZ2 1445 aa20.47■□□□□ 0.87
COL9A3-209ENST00000469852 ZNF316A6NFI3 1004 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-209ENST00000469852 ZNF692Q9BU19 519 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-209ENST00000469852 PIK3C2AO00443 1686 aa20.47■□□□□ 0.87
COL9A3-209ENST00000469852 SPATA31A3Q5VYP0 1347 aa20.47■□□□□ 0.87
COL9A3-209ENST00000469852 SBNO1A3KN83 1393 aa20.46■□□□□ 0.87
COL9A3-209ENST00000469852 PANK3Q9H999 370 aa20.46■□□□□ 0.87
COL9A3-209ENST00000469852 EDC4Q6P2E9 1401 aaKnown RBP20.45■□□□□ 0.86
COL9A3-209ENST00000469852 PAK3O75914 559 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-209ENST00000469852 TTC21BQ7Z4L5 1316 aa20.45■□□□□ 0.86
COL9A3-209ENST00000469852 NSD3Q9BZ95 1437 aa20.44■□□□□ 0.86
COL9A3-209ENST00000469852 SHPRHQ149N8 1683 aa20.44■□□□□ 0.86
COL9A3-209ENST00000469852 MARF1Q9Y4F3 1742 aaKnown RBP20.44■□□□□ 0.86
COL9A3-209ENST00000469852 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.43■□□□□ 0.86
COL9A3-209ENST00000469852 LRRC59Q96AG4 307 aaKnown RBP20.43■□□□□ 0.86
COL9A3-209ENST00000469852 PNPLA6Q8IY17 1366 aa20.43■□□□□ 0.86
COL9A3-209ENST00000469852 JCADQ9P266 1359 aa20.43■□□□□ 0.86
COL9A3-209ENST00000469852 NUTM2GQ5VZR2 741 aa20.42■□□□□ 0.86
COL9A3-209ENST00000469852 BRD4O60885 1362 aaPredicted RBP20.42■□□□□ 0.86
COL9A3-209ENST00000469852 COL22A1Q8NFW1 1626 aaPredicted RBP20.42■□□□□ 0.86
COL9A3-209ENST00000469852 CRYBG1Q9Y4K1 1723 aa20.41■□□□□ 0.86
COL9A3-209ENST00000469852 LMOD2Q6P5Q4 547 aa20.41■□□□□ 0.86
COL9A3-209ENST00000469852 ZRANB1Q9UGI0 708 aa20.41■□□□□ 0.86
COL9A3-209ENST00000469852 KIF20BQ96Q89 1820 aa20.41■□□□□ 0.86
COL9A3-209ENST00000469852 NME9Q86XW9 330 aa20.4■□□□□ 0.86
COL9A3-209ENST00000469852 ABCA3Q99758 1704 aa20.4■□□□□ 0.86
COL9A3-209ENST00000469852 PLEKHG5O94827 1062 aa20.39■□□□□ 0.85
COL9A3-209ENST00000469852 TTC21AQ8NDW8 1320 aa20.38■□□□□ 0.85
COL9A3-209ENST00000469852 ABTB2Q8N961 1025 aa20.38■□□□□ 0.85
COL9A3-209ENST00000469852 USP54Q70EL1 1684 aa20.38■□□□□ 0.85
COL9A3-209ENST00000469852 ARHGEF10O15013 1369 aa20.37■□□□□ 0.85
COL9A3-209ENST00000469852 PER1O15534 1290 aaPredicted RBP20.37■□□□□ 0.85
COL9A3-209ENST00000469852 DDX10Q13206 875 aaKnown RBP20.37■□□□□ 0.85
COL9A3-209ENST00000469852 PHRF1Q9P1Y6 1649 aaKnown RBP20.37■□□□□ 0.85
COL9A3-209ENST00000469852 LRP6O75581 1613 aa20.36■□□□□ 0.85
COL9A3-209ENST00000469852 CABLES1Q8TDN4 633 aa20.36■□□□□ 0.85
COL9A3-209ENST00000469852 FYB1O15117 783 aa20.35■□□□□ 0.85
COL9A3-209ENST00000469852 OVOS2A0A0J9YW53 1432 aa20.35■□□□□ 0.85
COL9A3-209ENST00000469852 OVOS2Q6IE36 1432 aa20.35■□□□□ 0.85
COL9A3-209ENST00000469852 GGNBP2Q9H3C7 697 aa20.34■□□□□ 0.85
COL9A3-209ENST00000469852 USP31Q70CQ4 1352 aa20.34■□□□□ 0.85
COL9A3-209ENST00000469852 USP19O94966 1318 aa20.33■□□□□ 0.85
COL9A3-209ENST00000469852 NLRP6P59044 892 aa20.33■□□□□ 0.85
COL9A3-209ENST00000469852 ANKRD26Q9UPS8 1709 aa20.33■□□□□ 0.84
COL9A3-209ENST00000469852 SLIT3O75094 1523 aa20.32■□□□□ 0.84
COL9A3-209ENST00000469852 SPATA31A6Q5VVP1 1343 aa20.32■□□□□ 0.84
COL9A3-209ENST00000469852 AMER1Q5JTC6 1135 aaPredicted RBP20.31■□□□□ 0.84
COL9A3-209ENST00000469852 KNSTRNQ9Y448 316 aa20.31■□□□□ 0.84
COL9A3-209ENST00000469852 CGNL1Q0VF96 1302 aa20.3■□□□□ 0.84
COL9A3-209ENST00000469852 NLRP13Q86W25 1043 aa20.3■□□□□ 0.84
COL9A3-209ENST00000469852 NUTM2BA6NNL0 878 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-209ENST00000469852 NUTM2EB1AL46 878 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-209ENST00000469852 NUTM2AQ8IVF1 878 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-209ENST00000469852 NFAT5O94916 1531 aa20.28■□□□□ 0.84
COL9A3-209ENST00000469852 SOX12O15370 315 aa20.26■□□□□ 0.83
COL9A3-209ENST00000469852 FBLN1P23142 703 aa20.26■□□□□ 0.83
COL9A3-209ENST00000469852 CNGB1Q14028 1251 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-209ENST00000469852 COG3Q96JB2 828 aa20.26■□□□□ 0.83
COL9A3-209ENST00000469852 GCP02774 474 aa20.25■□□□□ 0.83
COL9A3-209ENST00000469852 CC2D1BQ5T0F9 858 aaKnown RBP20.25■□□□□ 0.83
COL9A3-209ENST00000469852 NSD2O96028 1365 aa20.24■□□□□ 0.83
COL9A3-209ENST00000469852 MEX3CQ5U5Q3 659 aaKnown RBP20.24■□□□□ 0.83
COL9A3-209ENST00000469852 ADAMTS2O95450 1211 aa20.23■□□□□ 0.83
COL9A3-209ENST00000469852 HAP1P54257 671 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-209ENST00000469852 NPC1L1Q9UHC9 1359 aa20.22■□□□□ 0.83
COL9A3-209ENST00000469852 LTN1O94822 1766 aa20.22■□□□□ 0.83
COL9A3-209ENST00000469852 ZC3H6P61129 1189 aaKnown RBP20.22■□□□□ 0.83
COL9A3-209ENST00000469852 ZNF772Q68DY9 489 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-209ENST00000469852 KIAA0232Q92628 1395 aa20.21■□□□□ 0.83
COL9A3-209ENST00000469852 TNNT2P45379 298 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-209ENST00000469852 COL18A1P39060 1754 aa20.19■□□□□ 0.82
COL9A3-209ENST00000469852 MORC1Q86VD1 984 aa20.19■□□□□ 0.82
COL9A3-209ENST00000469852 KCNH5Q8NCM2 988 aa20.19■□□□□ 0.82
COL9A3-209ENST00000469852 PLCH1Q4KWH8 1693 aa20.19■□□□□ 0.82
COL9A3-209ENST00000469852 CPDO75976 1380 aa20.19■□□□□ 0.82
COL9A3-209ENST00000469852 MAP2P11137 1827 aaKnown RBP20.18■□□□□ 0.82
COL9A3-209ENST00000469852 CHRNA2Q15822 529 aa20.18■□□□□ 0.82
COL9A3-209ENST00000469852 PEAK1Q9H792 1746 aa20.18■□□□□ 0.82
COL9A3-209ENST00000469852 LMO7Q8WWI1 1683 aa20.17■□□□□ 0.82
COL9A3-209ENST00000469852 COL14A1Q05707 1796 aaKnown RBP20.17■□□□□ 0.82
COL9A3-209ENST00000469852 ZBTB7CA1YPR0 619 aa20.17■□□□□ 0.82
COL9A3-209ENST00000469852 FAM83GA6ND36 823 aa20.17■□□□□ 0.82
COL9A3-209ENST00000469852 RRS1Q15050 365 aaKnown RBP20.17■□□□□ 0.82
COL9A3-209ENST00000469852 ARHGEF25Q86VW2 580 aa20.17■□□□□ 0.82
COL9A3-209ENST00000469852 RGPD5Q99666 1765 aa20.16■□□□□ 0.82
COL9A3-209ENST00000469852 MAP3K19Q56UN5 1328 aa20.16■□□□□ 0.82
COL9A3-209ENST00000469852 C8orf37Q96NL8 207 aa20.15■□□□□ 0.82
COL9A3-209ENST00000469852 PRDM11Q9NQV5 511 aa20.15■□□□□ 0.82
COL9A3-209ENST00000469852 AATKQ6ZMQ8 1374 aa20.14■□□□□ 0.81
COL9A3-209ENST00000469852 PARD3Q8TEW0 1356 aa20.14■□□□□ 0.81
COL9A3-209ENST00000469852 RXRBP28702 533 aa20.14■□□□□ 0.81
COL9A3-209ENST00000469852 UPF1Q92900 1129 aaKnown RBP eCLIP20.14■□□□□ 0.81
COL9A3-209ENST00000469852 EMILIN1Q9Y6C2 1016 aa20.14■□□□□ 0.81
COL9A3-209ENST00000469852 CAMTA1Q9Y6Y1 1673 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms