RNA–Protein interactions for RNA: ENST00000466373.1

UFD1-206, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 3,059 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-206ENST00000466373 SMC4Q9NTJ3 1288 aa13.36□□□□□ -0.27
UFD1-206ENST00000466373 DIAPH1O60610 1272 aaKnown RBP13.36□□□□□ -0.27
UFD1-206ENST00000466373 FTSJ3Q8IY81 847 aaKnown RBP13.36□□□□□ -0.27
UFD1-206ENST00000466373 ALKQ9UM73 1620 aa13.36□□□□□ -0.27
UFD1-206ENST00000466373 SEC24BO95487 1268 aa13.35□□□□□ -0.27
UFD1-206ENST00000466373 ZKSCAN2Q63HK3 967 aa13.34□□□□□ -0.27
UFD1-206ENST00000466373 PMFBP1Q8TBY8 1022 aa13.33□□□□□ -0.27
UFD1-206ENST00000466373 SSH1Q8WYL5 1049 aa13.33□□□□□ -0.27
UFD1-206ENST00000466373 NLRP1Q9C000 1473 aa13.33□□□□□ -0.28
UFD1-206ENST00000466373 HMOX1P09601 288 aa13.33□□□□□ -0.28
UFD1-206ENST00000466373 MVPQ14764 893 aaKnown RBP13.33□□□□□ -0.28
UFD1-206ENST00000466373 DZIP1LQ8IYY4 767 aaKnown RBP13.33□□□□□ -0.28
UFD1-206ENST00000466373 COL3A1P02461 1466 aaPredicted RBP13.33□□□□□ -0.28
UFD1-206ENST00000466373 TXNDC2Q86VQ3 553 aa13.32□□□□□ -0.28
UFD1-206ENST00000466373 NCKAP5LQ9HCH0 1330 aa13.32□□□□□ -0.28
UFD1-206ENST00000466373 PDZRN3Q9UPQ7 1066 aa13.32□□□□□ -0.28
UFD1-206ENST00000466373 ADGRB2O60241 1585 aa13.32□□□□□ -0.28
UFD1-206ENST00000466373 ARHGEF40Q8TER5 1519 aa13.32□□□□□ -0.28
UFD1-206ENST00000466373 TRIM27P14373 513 aa13.32□□□□□ -0.28
UFD1-206ENST00000466373 ZRANB1Q9UGI0 708 aa13.32□□□□□ -0.28
UFD1-206ENST00000466373 PRKAR2BP31323 418 aa13.31□□□□□ -0.28
UFD1-206ENST00000466373 ITPRIPQ8IWB1 547 aa13.31□□□□□ -0.28
UFD1-206ENST00000466373 CLTCQ00610 1675 aaKnown RBP13.31□□□□□ -0.28
UFD1-206ENST00000466373 POLKQ9UBT6 870 aa13.31□□□□□ -0.28
UFD1-206ENST00000466373 THUMPD2Q9BTF0 503 aaKnown RBP13.31□□□□□ -0.28
UFD1-206ENST00000466373 NOB1Q9ULX3 412 aaKnown RBP13.31□□□□□ -0.28
UFD1-206ENST00000466373 RIMS2Q9UQ26 1411 aa13.3□□□□□ -0.28
UFD1-206ENST00000466373 RWDD1Q9H446 243 aaPredicted RBP13.3□□□□□ -0.28
UFD1-206ENST00000466373 EMILIN1Q9Y6C2 1016 aa13.3□□□□□ -0.28
UFD1-206ENST00000466373 A2ML1A8K2U0 1454 aa13.3□□□□□ -0.28
UFD1-206ENST00000466373 NME9Q86XW9 330 aa13.3□□□□□ -0.28
UFD1-206ENST00000466373 USP19O94966 1318 aa13.29□□□□□ -0.28
UFD1-206ENST00000466373 PHACTR3Q96KR7 559 aa13.29□□□□□ -0.28
UFD1-206ENST00000466373 ESF1Q9H501 851 aaKnown RBP13.29□□□□□ -0.28
UFD1-206ENST00000466373 DIP2BQ9P265 1576 aa13.29□□□□□ -0.28
UFD1-206ENST00000466373 NFKBIBQ15653 356 aa13.28□□□□□ -0.28
UFD1-206ENST00000466373 NCBP3Q53F19 620 aaKnown RBP13.28□□□□□ -0.28
UFD1-206ENST00000466373 ATF7IPQ6VMQ6 1270 aa13.28□□□□□ -0.28
UFD1-206ENST00000466373 METP08581 1390 aa13.28□□□□□ -0.28
UFD1-206ENST00000466373 PNPLA6Q8IY17 1366 aa13.27□□□□□ -0.28
UFD1-206ENST00000466373 RIMBP3CA6NJZ7 1639 aa13.27□□□□□ -0.29
UFD1-206ENST00000466373 RIMBP3BA6NNM3 1639 aa13.27□□□□□ -0.29
UFD1-206ENST00000466373 RIMBP3Q9UFD9 1639 aa13.27□□□□□ -0.29
UFD1-206ENST00000466373 FCHSD2O94868 740 aa13.27□□□□□ -0.29
UFD1-206ENST00000466373 TMEM57Q8N5G2 664 aa13.27□□□□□ -0.29
UFD1-206ENST00000466373 RSPH6AQ9H0K4 717 aa13.27□□□□□ -0.29
UFD1-206ENST00000466373 USP35Q9P2H5 1018 aa13.27□□□□□ -0.29
UFD1-206ENST00000466373 ANKRD26Q9UPS8 1709 aa13.27□□□□□ -0.29
UFD1-206ENST00000466373 MED14O60244 1454 aa13.26□□□□□ -0.29
UFD1-206ENST00000466373 WASLO00401 505 aaPredicted RBP13.26□□□□□ -0.29
UFD1-206ENST00000466373 ELL2O00472 640 aaPredicted RBP13.26□□□□□ -0.29
UFD1-206ENST00000466373 RRS1Q15050 365 aaKnown RBP13.26□□□□□ -0.29
UFD1-206ENST00000466373 NUTM2FA1L443 756 aa13.26□□□□□ -0.29
UFD1-206ENST00000466373 CT47B1P0C2W7 299 aaPredicted RBP13.26□□□□□ -0.29
UFD1-206ENST00000466373 AAMPQ13685 434 aa13.26□□□□□ -0.29
UFD1-206ENST00000466373 PNNQ9H307 717 aaKnown RBP13.26□□□□□ -0.29
UFD1-206ENST00000466373 PPIP5K1Q6PFW1 1433 aa13.25□□□□□ -0.29
UFD1-206ENST00000466373 KIF20BQ96Q89 1820 aa13.25□□□□□ -0.29
UFD1-206ENST00000466373 LRRC7Q96NW7 1537 aa13.25□□□□□ -0.29
UFD1-206ENST00000466373 NUDT16Q96DE0 195 aaKnown RBP13.25□□□□□ -0.29
UFD1-206ENST00000466373 MAP2P11137 1827 aaKnown RBP13.24□□□□□ -0.29
UFD1-206ENST00000466373 DDX19BQ9UMR2 479 aa13.24□□□□□ -0.29
UFD1-206ENST00000466373 PPP6R1Q9UPN7 881 aa13.24□□□□□ -0.29
UFD1-206ENST00000466373 IL16Q14005 1332 aa13.24□□□□□ -0.29
UFD1-206ENST00000466373 PLPPR3Q6T4P5 718 aa13.24□□□□□ -0.29
UFD1-206ENST00000466373 ZMYM3Q14202 1370 aa13.23□□□□□ -0.29
UFD1-206ENST00000466373 FRAT2O75474 233 aaPredicted RBP13.23□□□□□ -0.29
UFD1-206ENST00000466373 VIRMAQ69YN4 1812 aaKnown RBP13.23□□□□□ -0.29
UFD1-206ENST00000466373 TSPYL6Q8N831 410 aa13.22□□□□□ -0.29
UFD1-206ENST00000466373 SPATA31D1Q6ZQQ2 1576 aa13.22□□□□□ -0.29
UFD1-206ENST00000466373 NFE2L2Q16236 605 aa13.22□□□□□ -0.29
UFD1-206ENST00000466373 SLKQ9H2G2 1235 aaPredicted RBP13.22□□□□□ -0.29
UFD1-206ENST00000466373 ATP7BP35670 1465 aa13.22□□□□□ -0.29
UFD1-206ENST00000466373 AGLP35573 1532 aa13.22□□□□□ -0.29
UFD1-206ENST00000466373 COG3Q96JB2 828 aa13.21□□□□□ -0.29
UFD1-206ENST00000466373 UPF2Q9HAU5 1272 aaKnown RBP13.21□□□□□ -0.29
UFD1-206ENST00000466373 CCDC61Q9Y6R9 512 aa13.21□□□□□ -0.29
UFD1-206ENST00000466373 FAM135BQ49AJ0 1406 aa13.21□□□□□ -0.29
UFD1-206ENST00000466373 FAM83GA6ND36 823 aa13.21□□□□□ -0.29
UFD1-206ENST00000466373 IL13P35225 146 aa13.21□□□□□ -0.29
UFD1-206ENST00000466373 SOX12O15370 315 aa13.21□□□□□ -0.3
UFD1-206ENST00000466373 IPO8O15397 1037 aaKnown RBP13.21□□□□□ -0.3
UFD1-206ENST00000466373 DCTN1Q14203 1278 aa13.21□□□□□ -0.3
UFD1-206ENST00000466373 SETD1AO15047 1707 aaKnown RBP13.2□□□□□ -0.3
UFD1-206ENST00000466373 KIF16BQ96L93 1317 aa13.2□□□□□ -0.3
UFD1-206ENST00000466373 ZBTB40Q9NUA8 1239 aa13.2□□□□□ -0.3
UFD1-206ENST00000466373 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.2□□□□□ -0.3
UFD1-206ENST00000466373 C1orf115Q9H7X2 142 aa13.2□□□□□ -0.3
UFD1-206ENST00000466373 DLC1Q96QB1 1528 aa13.2□□□□□ -0.3
UFD1-206ENST00000466373 EDC4Q6P2E9 1401 aaKnown RBP13.2□□□□□ -0.3
UFD1-206ENST00000466373 CPSF1Q10570 1443 aaKnown RBP13.19□□□□□ -0.3
UFD1-206ENST00000466373 PRR36Q9H6K5 1346 aa13.19□□□□□ -0.3
UFD1-206ENST00000466373 NRXN3Q9Y4C0 1643 aa13.19□□□□□ -0.3
UFD1-206ENST00000466373 MFAP1P55081 439 aaKnown RBP13.19□□□□□ -0.3
UFD1-206ENST00000466373 HDAC1Q13547 482 aaPredicted RBP13.19□□□□□ -0.3
UFD1-206ENST00000466373 SPRYD3Q8NCJ5 442 aa13.19□□□□□ -0.3
UFD1-206ENST00000466373 MBIPQ9NS73 344 aa13.19□□□□□ -0.3
UFD1-206ENST00000466373 VAMP4O75379 141 aa13.18□□□□□ -0.3
UFD1-206ENST00000466373 LNPKQ9C0E8 428 aa13.18□□□□□ -0.3
UFD1-206ENST00000466373 REREQ9P2R6 1566 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms