RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 RGPD8O14715 1765 aaPredicted RBP24.06■■□□□ 1.44
COL9A3-205ENST00000466192 NUTM2FA1L443 756 aa24.06■■□□□ 1.44
COL9A3-205ENST00000466192 DUSP27Q5VZP5 1158 aa24.06■■□□□ 1.44
COL9A3-205ENST00000466192 ANKLE2Q86XL3 938 aa24.06■■□□□ 1.44
COL9A3-205ENST00000466192 IQSEC2Q5JU85 1478 aa24.05■■□□□ 1.44
COL9A3-205ENST00000466192 PIK3R4Q99570 1358 aa24.05■■□□□ 1.44
COL9A3-205ENST00000466192 CHD2O14647 1828 aaKnown RBP24.05■■□□□ 1.44
COL9A3-205ENST00000466192 RRP1P56182 461 aaKnown RBP24.05■■□□□ 1.44
COL9A3-205ENST00000466192 NME9Q86XW9 330 aa24.05■■□□□ 1.44
COL9A3-205ENST00000466192 NGEFQ8N5V2 710 aa24.05■■□□□ 1.44
COL9A3-205ENST00000466192 NRKQ7Z2Y5 1582 aa24.04■■□□□ 1.44
COL9A3-205ENST00000466192 ZNF692Q9BU19 519 aaPredicted RBP24.04■■□□□ 1.44
COL9A3-205ENST00000466192 NKTRP30414 1462 aaKnown RBP24.04■■□□□ 1.44
COL9A3-205ENST00000466192 KCNA6P17658 529 aa24.03■■□□□ 1.44
COL9A3-205ENST00000466192 SLFN5Q08AF3 891 aa24.03■■□□□ 1.44
COL9A3-205ENST00000466192 PNPLA6Q8IY17 1366 aa24.03■■□□□ 1.44
COL9A3-205ENST00000466192 U2AF1L5P0DN76 240 aaPredicted RBP24.03■■□□□ 1.44
COL9A3-205ENST00000466192 FBLN1P23142 703 aa24.03■■□□□ 1.44
COL9A3-205ENST00000466192 U2AF1Q01081 240 aaKnown RBP eCLIP24.03■■□□□ 1.44
COL9A3-205ENST00000466192 ZRANB1Q9UGI0 708 aa24.03■■□□□ 1.44
COL9A3-205ENST00000466192 PLEKHG3A1L390 1219 aa24.02■■□□□ 1.44
COL9A3-205ENST00000466192 TRMT2AQ8IZ69 625 aaKnown RBP24.01■■□□□ 1.43
COL9A3-205ENST00000466192 TCP11L2Q8N4U5 519 aa24.01■■□□□ 1.43
COL9A3-205ENST00000466192 SPINK5Q9NQ38 1064 aaPredicted RBP24.01■■□□□ 1.43
COL9A3-205ENST00000466192 ACEP12821 1306 aa24.01■■□□□ 1.43
COL9A3-205ENST00000466192 POLKQ9UBT6 870 aa24.01■■□□□ 1.43
COL9A3-205ENST00000466192 DMRT2Q9Y5R5 561 aa24■■□□□ 1.43
COL9A3-205ENST00000466192 WWC1Q8IX03 1113 aa23.99■■□□□ 1.43
COL9A3-205ENST00000466192 RRP7AQ9Y3A4 280 aaKnown RBP23.98■■□□□ 1.43
COL9A3-205ENST00000466192 U2SURPO15042 1029 aaKnown RBP23.98■■□□□ 1.43
COL9A3-205ENST00000466192 NEUROD2Q15784 382 aa23.97■■□□□ 1.43
COL9A3-205ENST00000466192 USP6P35125 1406 aa23.96■■□□□ 1.43
COL9A3-205ENST00000466192 DIAPH1O60610 1272 aaKnown RBP23.96■■□□□ 1.43
COL9A3-205ENST00000466192 COG3Q96JB2 828 aa23.96■■□□□ 1.43
COL9A3-205ENST00000466192 PHF23Q9BUL5 403 aaPredicted RBP23.96■■□□□ 1.43
COL9A3-205ENST00000466192 CCDC136Q96JN2 1154 aa23.95■■□□□ 1.42
COL9A3-205ENST00000466192 FMN2Q9NZ56 1722 aa23.95■■□□□ 1.42
COL9A3-205ENST00000466192 TTC21BQ7Z4L5 1316 aa23.95■■□□□ 1.42
COL9A3-205ENST00000466192 AATKQ6ZMQ8 1374 aa23.95■■□□□ 1.42
COL9A3-205ENST00000466192 E9PSI1 815 aa23.95■■□□□ 1.42
COL9A3-205ENST00000466192 PPM1GO15355 546 aaPredicted RBP23.94■■□□□ 1.42
COL9A3-205ENST00000466192 NALCNQ8IZF0 1738 aa23.94■■□□□ 1.42
COL9A3-205ENST00000466192 PLEKHF1Q96S99 279 aa23.93■■□□□ 1.42
COL9A3-205ENST00000466192 EMILIN1Q9Y6C2 1016 aa23.93■■□□□ 1.42
COL9A3-205ENST00000466192 PLIN1O60240 522 aa23.92■■□□□ 1.42
COL9A3-205ENST00000466192 SSH2Q76I76 1423 aa23.92■■□□□ 1.42
COL9A3-205ENST00000466192 PMFBP1Q8TBY8 1022 aa23.92■■□□□ 1.42
COL9A3-205ENST00000466192 CDK12Q9NYV4 1490 aaPredicted RBP23.91■■□□□ 1.42
COL9A3-205ENST00000466192 NPHP4O75161 1426 aaPredicted RBP23.91■■□□□ 1.42
COL9A3-205ENST00000466192 CCDC27Q2M243 656 aa23.91■■□□□ 1.42
COL9A3-205ENST00000466192 EXOC6Q8TAG9 804 aa23.91■■□□□ 1.42
COL9A3-205ENST00000466192 ANKARQ7Z5J8 1434 aa23.9■■□□□ 1.42
COL9A3-205ENST00000466192 NCBP3Q53F19 620 aaKnown RBP23.89■■□□□ 1.42
COL9A3-205ENST00000466192 OVOS2A0A0J9YW53 1432 aa23.89■■□□□ 1.42
COL9A3-205ENST00000466192 OVOS2Q6IE36 1432 aa23.89■■□□□ 1.42
COL9A3-205ENST00000466192 RRS1Q15050 365 aaKnown RBP23.88■■□□□ 1.41
COL9A3-205ENST00000466192 WDR63Q8IWG1 891 aa23.87■■□□□ 1.41
COL9A3-205ENST00000466192 LRRC7Q96NW7 1537 aa23.87■■□□□ 1.41
COL9A3-205ENST00000466192 NGDNQ8NEJ9 315 aaKnown RBP23.86■■□□□ 1.41
COL9A3-205ENST00000466192 RBM33Q96EV2 1170 aaKnown RBP23.85■■□□□ 1.41
COL9A3-205ENST00000466192 RBM19Q9Y4C8 960 aaKnown RBP23.85■■□□□ 1.41
COL9A3-205ENST00000466192 MAPK8IP3Q9UPT6 1336 aa23.84■■□□□ 1.41
COL9A3-205ENST00000466192 TMPOP42166 694 aaKnown RBP23.84■■□□□ 1.41
COL9A3-205ENST00000466192 FCHSD2O94868 740 aa23.84■■□□□ 1.41
COL9A3-205ENST00000466192 IL13P35225 146 aa23.84■■□□□ 1.41
COL9A3-205ENST00000466192 TTC21AQ8NDW8 1320 aa23.83■■□□□ 1.41
COL9A3-205ENST00000466192 RSPH6AQ9H0K4 717 aa23.82■■□□□ 1.4
COL9A3-205ENST00000466192 PIK3C2AO00443 1686 aa23.82■■□□□ 1.4
COL9A3-205ENST00000466192 PNNQ9H307 717 aaKnown RBP23.82■■□□□ 1.4
COL9A3-205ENST00000466192 USP31Q70CQ4 1352 aa23.81■■□□□ 1.4
COL9A3-205ENST00000466192 PEAK1Q9H792 1746 aa23.8■■□□□ 1.4
COL9A3-205ENST00000466192 TRIM35Q9UPQ4 493 aa23.8■■□□□ 1.4
COL9A3-205ENST00000466192 ADGRL3Q9HAR2 1447 aa23.8■■□□□ 1.4
COL9A3-205ENST00000466192 NWD1Q149M9 1564 aa23.79■■□□□ 1.4
COL9A3-205ENST00000466192 PRKAR2BP31323 418 aa23.79■■□□□ 1.4
COL9A3-205ENST00000466192 C20orf194Q5TEA3 1177 aa23.79■■□□□ 1.4
COL9A3-205ENST00000466192 HMOX1P09601 288 aa23.78■■□□□ 1.4
COL9A3-205ENST00000466192 CRBNQ96SW2 442 aa23.78■■□□□ 1.4
COL9A3-205ENST00000466192 MARF1Q9Y4F3 1742 aaKnown RBP23.77■■□□□ 1.4
COL9A3-205ENST00000466192 ANP32EQ9BTT0 268 aa23.76■■□□□ 1.39
COL9A3-205ENST00000466192 BCAR3O75815 825 aa23.76■■□□□ 1.39
COL9A3-205ENST00000466192 RIPK4P57078 832 aa23.76■■□□□ 1.39
COL9A3-205ENST00000466192 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.74■■□□□ 1.39
COL9A3-205ENST00000466192 PHACTR3Q96KR7 559 aa23.74■■□□□ 1.39
COL9A3-205ENST00000466192 MYH16Q9H6N6 1097 aa23.74■■□□□ 1.39
COL9A3-205ENST00000466192 USP54Q70EL1 1684 aa23.73■■□□□ 1.39
COL9A3-205ENST00000466192 SOX12O15370 315 aa23.73■■□□□ 1.39
COL9A3-205ENST00000466192 DLG5Q8TDM6 1919 aa23.73■■□□□ 1.39
COL9A3-205ENST00000466192 PHF8Q9UPP1 1060 aa23.72■■□□□ 1.39
COL9A3-205ENST00000466192 EIF4A2Q14240 407 aaKnown RBP23.72■■□□□ 1.39
COL9A3-205ENST00000466192 NEFMP07197 916 aa23.71■■□□□ 1.39
COL9A3-205ENST00000466192 RGPD1P0DJD0 1748 aa23.7■■□□□ 1.38
COL9A3-205ENST00000466192 HSP90AB2PQ58FF8 381 aa23.7■■□□□ 1.38
COL9A3-205ENST00000466192 MAP3K19Q56UN5 1328 aa23.69■■□□□ 1.38
COL9A3-205ENST00000466192 C14orf37Q86TY3 774 aa23.69■■□□□ 1.38
COL9A3-205ENST00000466192 IL16Q14005 1332 aa23.69■■□□□ 1.38
COL9A3-205ENST00000466192 FANCIQ9NVI1 1328 aa23.69■■□□□ 1.38
COL9A3-205ENST00000466192 NLRP6P59044 892 aa23.68■■□□□ 1.38
COL9A3-205ENST00000466192 NFE2L2Q16236 605 aa23.68■■□□□ 1.38
COL9A3-205ENST00000466192 TSR2Q969E8 191 aaKnown RBP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms