RNA–Protein interactions for RNA: ENST00000466154.5

SLX4-202, Transcript of SLX4 structure-specific endonuclease subunit, humanhuman

TSL 1 (best)

Gene SLX4, Length 3,228 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLX4-202ENST00000466154 SSH1Q8WYL5 1049 aa20.9■□□□□ 0.94
SLX4-202ENST00000466154 ARHGEF28Q8N1W1 1705 aaKnown RBP20.9■□□□□ 0.94
SLX4-202ENST00000466154 NSD2O96028 1365 aa20.9■□□□□ 0.94
SLX4-202ENST00000466154 SOX12O15370 315 aa20.89■□□□□ 0.94
SLX4-202ENST00000466154 TRIM35Q9UPQ4 493 aa20.89■□□□□ 0.94
SLX4-202ENST00000466154 TSPOAP1O95153 1857 aa20.89■□□□□ 0.94
SLX4-202ENST00000466154 PHF23Q9BUL5 403 aaPredicted RBP20.89■□□□□ 0.93
SLX4-202ENST00000466154 ZC3H13Q5T200 1668 aaKnown RBP20.89■□□□□ 0.93
SLX4-202ENST00000466154 MYO5BQ9ULV0 1848 aa20.88■□□□□ 0.93
SLX4-202ENST00000466154 CCDC27Q2M243 656 aa20.88■□□□□ 0.93
SLX4-202ENST00000466154 PUS7Q96PZ0 661 aaKnown RBP20.88■□□□□ 0.93
SLX4-202ENST00000466154 NOB1Q9ULX3 412 aaKnown RBP20.88■□□□□ 0.93
SLX4-202ENST00000466154 PLEKHF1Q96S99 279 aa20.87■□□□□ 0.93
SLX4-202ENST00000466154 RWDD1Q9H446 243 aaPredicted RBP20.87■□□□□ 0.93
SLX4-202ENST00000466154 EMILIN1Q9Y6C2 1016 aa20.87■□□□□ 0.93
SLX4-202ENST00000466154 MVPQ14764 893 aaKnown RBP20.87■□□□□ 0.93
SLX4-202ENST00000466154 ARHGAP31Q2M1Z3 1444 aa20.87■□□□□ 0.93
SLX4-202ENST00000466154 IQSEC2Q5JU85 1478 aa20.86■□□□□ 0.93
SLX4-202ENST00000466154 NME9Q86XW9 330 aa20.86■□□□□ 0.93
SLX4-202ENST00000466154 TRIM27P14373 513 aa20.86■□□□□ 0.93
SLX4-202ENST00000466154 RRS1Q15050 365 aaKnown RBP20.85■□□□□ 0.93
SLX4-202ENST00000466154 PTPRMP28827 1452 aa20.84■□□□□ 0.93
SLX4-202ENST00000466154 SLKQ9H2G2 1235 aaPredicted RBP20.84■□□□□ 0.93
SLX4-202ENST00000466154 NINLQ9Y2I6 1382 aa20.84■□□□□ 0.93
SLX4-202ENST00000466154 NFKBIBQ15653 356 aa20.83■□□□□ 0.93
SLX4-202ENST00000466154 SPRYD3Q8NCJ5 442 aa20.83■□□□□ 0.93
SLX4-202ENST00000466154 RICTORQ6R327 1708 aa20.83■□□□□ 0.92
SLX4-202ENST00000466154 POLKQ9UBT6 870 aa20.83■□□□□ 0.92
SLX4-202ENST00000466154 PHACTR3Q96KR7 559 aa20.82■□□□□ 0.92
SLX4-202ENST00000466154 TMEM57Q8N5G2 664 aa20.81■□□□□ 0.92
SLX4-202ENST00000466154 UPF2Q9HAU5 1272 aaKnown RBP20.81■□□□□ 0.92
SLX4-202ENST00000466154 ANO8Q9HCE9 1232 aaPredicted RBP20.8■□□□□ 0.92
SLX4-202ENST00000466154 ATF7IPQ6VMQ6 1270 aa20.8■□□□□ 0.92
SLX4-202ENST00000466154 PREX1Q8TCU6 1659 aa20.79■□□□□ 0.92
SLX4-202ENST00000466154 TMEM131LA2VDJ0 1609 aa20.79■□□□□ 0.92
SLX4-202ENST00000466154 ZFYVE9O95405 1425 aa20.79■□□□□ 0.92
SLX4-202ENST00000466154 RIMS2Q9UQ26 1411 aa20.79■□□□□ 0.92
SLX4-202ENST00000466154 ALKQ9UM73 1620 aa20.78■□□□□ 0.92
SLX4-202ENST00000466154 PNNQ9H307 717 aaKnown RBP20.78■□□□□ 0.92
SLX4-202ENST00000466154 CD163L1Q9NR16 1453 aa20.77■□□□□ 0.92
SLX4-202ENST00000466154 DCTN1Q14203 1278 aa20.77■□□□□ 0.92
SLX4-202ENST00000466154 C1orf115Q9H7X2 142 aa20.77■□□□□ 0.92
SLX4-202ENST00000466154 FRAT2O75474 233 aaPredicted RBP20.76■□□□□ 0.91
SLX4-202ENST00000466154 MFAP1P55081 439 aaKnown RBP20.76■□□□□ 0.91
SLX4-202ENST00000466154 NUDT16Q96DE0 195 aaKnown RBP20.76■□□□□ 0.91
SLX4-202ENST00000466154 WASLO00401 505 aaPredicted RBP20.76■□□□□ 0.91
SLX4-202ENST00000466154 COG3Q96JB2 828 aa20.76■□□□□ 0.91
SLX4-202ENST00000466154 FCHSD2O94868 740 aa20.75■□□□□ 0.91
SLX4-202ENST00000466154 FAM83GA6ND36 823 aa20.75■□□□□ 0.91
SLX4-202ENST00000466154 DDX19BQ9UMR2 479 aa20.75■□□□□ 0.91
SLX4-202ENST00000466154 RSPH6AQ9H0K4 717 aa20.74■□□□□ 0.91
SLX4-202ENST00000466154 METP08581 1390 aa20.74■□□□□ 0.91
SLX4-202ENST00000466154 TSPYL6Q8N831 410 aa20.74■□□□□ 0.91
SLX4-202ENST00000466154 USP35Q9P2H5 1018 aa20.74■□□□□ 0.91
SLX4-202ENST00000466154 RTN4Q9NQC3 1192 aaKnown RBP20.73■□□□□ 0.91
SLX4-202ENST00000466154 USP19O94966 1318 aa20.73■□□□□ 0.91
SLX4-202ENST00000466154 USP32Q8NFA0 1604 aa20.73■□□□□ 0.91
SLX4-202ENST00000466154 PPIP5K1Q6PFW1 1433 aa20.73■□□□□ 0.91
SLX4-202ENST00000466154 IPO8O15397 1037 aaKnown RBP20.72■□□□□ 0.91
SLX4-202ENST00000466154 LNPKQ9C0E8 428 aa20.72■□□□□ 0.91
SLX4-202ENST00000466154 BECN1Q14457 450 aa20.71■□□□□ 0.91
SLX4-202ENST00000466154 ARHGEF40Q8TER5 1519 aa20.7■□□□□ 0.91
SLX4-202ENST00000466154 SLC26A8Q96RN1 970 aa20.7■□□□□ 0.9
SLX4-202ENST00000466154 A2ML1A8K2U0 1454 aa20.7■□□□□ 0.9
SLX4-202ENST00000466154 CEBPAP49715 358 aaPredicted RBP20.7■□□□□ 0.9
SLX4-202ENST00000466154 NFE2L2Q16236 605 aa20.7■□□□□ 0.9
SLX4-202ENST00000466154 CT47B1P0C2W7 299 aaPredicted RBP20.69■□□□□ 0.9
SLX4-202ENST00000466154 CCDC61Q9Y6R9 512 aa20.69■□□□□ 0.9
SLX4-202ENST00000466154 KIF16BQ96L93 1317 aa20.69■□□□□ 0.9
SLX4-202ENST00000466154 CLTCQ00610 1675 aaKnown RBP20.68■□□□□ 0.9
SLX4-202ENST00000466154 COL3A1P02461 1466 aaPredicted RBP20.68■□□□□ 0.9
SLX4-202ENST00000466154 NLRP1Q9C000 1473 aa20.68■□□□□ 0.9
SLX4-202ENST00000466154 AAMPQ13685 434 aa20.68■□□□□ 0.9
SLX4-202ENST00000466154 ZMYM3Q14202 1370 aa20.67■□□□□ 0.9
SLX4-202ENST00000466154 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.66■□□□□ 0.9
SLX4-202ENST00000466154 ARXQ96QS3 562 aa20.66■□□□□ 0.9
SLX4-202ENST00000466154 AEBP1Q8IUX7 1158 aa20.66■□□□□ 0.9
SLX4-202ENST00000466154 MBIPQ9NS73 344 aa20.66■□□□□ 0.9
SLX4-202ENST00000466154 IL16Q14005 1332 aa20.65■□□□□ 0.9
SLX4-202ENST00000466154 IL13P35225 146 aa20.65■□□□□ 0.9
SLX4-202ENST00000466154 ANKRD45Q5TZF3 282 aa20.65■□□□□ 0.9
SLX4-202ENST00000466154 IL27Q8NEV9 243 aa20.65■□□□□ 0.9
SLX4-202ENST00000466154 SULT6B1Q6IMI4 303 aa20.64■□□□□ 0.89
SLX4-202ENST00000466154 GSE1Q14687 1217 aa20.64■□□□□ 0.89
SLX4-202ENST00000466154 TWISTNBQ3B726 338 aaPredicted RBP20.64■□□□□ 0.89
SLX4-202ENST00000466154 ZBTB40Q9NUA8 1239 aa20.64■□□□□ 0.89
SLX4-202ENST00000466154 ADGRB2O60241 1585 aa20.63■□□□□ 0.89
SLX4-202ENST00000466154 HDGFP51858 240 aaKnown RBP20.63■□□□□ 0.89
SLX4-202ENST00000466154 PNPLA6Q8IY17 1366 aa20.63■□□□□ 0.89
SLX4-202ENST00000466154 KRT24Q2M2I5 525 aa20.63■□□□□ 0.89
SLX4-202ENST00000466154 LRRC7Q96NW7 1537 aa20.63■□□□□ 0.89
SLX4-202ENST00000466154 C8orf58Q8NAV2 365 aa20.63■□□□□ 0.89
SLX4-202ENST00000466154 GNAI1P63096 354 aa20.62■□□□□ 0.89
SLX4-202ENST00000466154 VAMP4O75379 141 aa20.62■□□□□ 0.89
SLX4-202ENST00000466154 PLEKHG5O94827 1062 aa20.62■□□□□ 0.89
SLX4-202ENST00000466154 TBC1D32Q96NH3 1257 aa20.61■□□□□ 0.89
SLX4-202ENST00000466154 APBB1O00213 710 aa20.61■□□□□ 0.89
SLX4-202ENST00000466154 MCM10Q7L590 875 aa20.61■□□□□ 0.89
SLX4-202ENST00000466154 PPP6R1Q9UPN7 881 aa20.61■□□□□ 0.89
SLX4-202ENST00000466154 RIMBP3CA6NJZ7 1639 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms