RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ST20-MTHFSA0A0A6YYL1 179 aa16.69■□□□□ 0.26
VPS52-213ENST00000461743 MEX3CQ5U5Q3 659 aaKnown RBP16.69■□□□□ 0.26
VPS52-213ENST00000461743 COL14A1Q05707 1796 aaKnown RBP16.69■□□□□ 0.26
VPS52-213ENST00000461743 CPSF1Q10570 1443 aaKnown RBP16.68■□□□□ 0.26
VPS52-213ENST00000461743 SSH2Q76I76 1423 aa16.66■□□□□ 0.26
VPS52-213ENST00000461743 CD163L1Q9NR16 1453 aa16.66■□□□□ 0.26
VPS52-213ENST00000461743 NRAPQ86VF7 1730 aa16.65■□□□□ 0.26
VPS52-213ENST00000461743 NUTM2BA6NNL0 878 aaPredicted RBP16.65■□□□□ 0.26
VPS52-213ENST00000461743 NUTM2EB1AL46 878 aaPredicted RBP16.65■□□□□ 0.26
VPS52-213ENST00000461743 TMF1P82094 1093 aa16.65■□□□□ 0.26
VPS52-213ENST00000461743 NUTM2AQ8IVF1 878 aaPredicted RBP16.65■□□□□ 0.26
VPS52-213ENST00000461743 KIF20BQ96Q89 1820 aa16.64■□□□□ 0.25
VPS52-213ENST00000461743 CDCA8Q53HL2 280 aa16.64■□□□□ 0.25
VPS52-213ENST00000461743 ZNF692Q9BU19 519 aaPredicted RBP16.64■□□□□ 0.25
VPS52-213ENST00000461743 CABP1Q9NZU7 370 aa16.64■□□□□ 0.25
VPS52-213ENST00000461743 SLIT3O75094 1523 aa16.64■□□□□ 0.25
VPS52-213ENST00000461743 ZNF772Q68DY9 489 aaPredicted RBP16.63■□□□□ 0.25
VPS52-213ENST00000461743 EDC4Q6P2E9 1401 aaKnown RBP16.62■□□□□ 0.25
VPS52-213ENST00000461743 SLIT2O94813 1529 aa16.61■□□□□ 0.25
VPS52-213ENST00000461743 PAK3O75914 559 aaPredicted RBP16.61■□□□□ 0.25
VPS52-213ENST00000461743 EIF4G2P78344 907 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS52-213ENST00000461743 TTC21AQ8NDW8 1320 aa16.61■□□□□ 0.25
VPS52-213ENST00000461743 KTN1Q86UP2 1357 aaKnown RBP16.61■□□□□ 0.25
VPS52-213ENST00000461743 LMOD2Q6P5Q4 547 aa16.6■□□□□ 0.25
VPS52-213ENST00000461743 RGS17Q9UGC6 210 aaPredicted RBP16.6■□□□□ 0.25
VPS52-213ENST00000461743 USP19O94966 1318 aa16.6■□□□□ 0.25
VPS52-213ENST00000461743 AFF2P51816 1311 aa16.6■□□□□ 0.25
VPS52-213ENST00000461743 C8orf37Q96NL8 207 aa16.59■□□□□ 0.25
VPS52-213ENST00000461743 A0A1W2PP64 1363 aa16.59■□□□□ 0.25
VPS52-213ENST00000461743 ANKRD36BQ8N2N9 1353 aa16.59■□□□□ 0.25
VPS52-213ENST00000461743 CDK12Q9NYV4 1490 aaPredicted RBP16.59■□□□□ 0.25
VPS52-213ENST00000461743 ABCC6O95255 1503 aa16.59■□□□□ 0.25
VPS52-213ENST00000461743 LMO7Q8WWI1 1683 aa16.59■□□□□ 0.25
VPS52-213ENST00000461743 LTN1O94822 1766 aa16.59■□□□□ 0.25
VPS52-213ENST00000461743 ADAMTS2O95450 1211 aa16.58■□□□□ 0.24
VPS52-213ENST00000461743 HAP1P54257 671 aaPredicted RBP16.58■□□□□ 0.24
VPS52-213ENST00000461743 HDGFL2Q7Z4V5 671 aaPredicted RBP16.58■□□□□ 0.24
VPS52-213ENST00000461743 TERF2IPQ9NYB0 399 aa16.58■□□□□ 0.24
VPS52-213ENST00000461743 FNBP4Q8N3X1 1017 aaPredicted RBP16.57■□□□□ 0.24
VPS52-213ENST00000461743 ANKRD26Q9UPS8 1709 aa16.56■□□□□ 0.24
VPS52-213ENST00000461743 ATRNO75882 1429 aa16.56■□□□□ 0.24
VPS52-213ENST00000461743 ABTB2Q8N961 1025 aa16.56■□□□□ 0.24
VPS52-213ENST00000461743 NGLY1Q96IV0 654 aa16.56■□□□□ 0.24
VPS52-213ENST00000461743 BCL9LQ86UU0 1499 aa16.55■□□□□ 0.24
VPS52-213ENST00000461743 CPDO75976 1380 aa16.55■□□□□ 0.24
VPS52-213ENST00000461743 TTC21BQ7Z4L5 1316 aa16.55■□□□□ 0.24
VPS52-213ENST00000461743 NLRP13Q86W25 1043 aa16.55■□□□□ 0.24
VPS52-213ENST00000461743 TMC1Q8TDI8 760 aa16.55■□□□□ 0.24
VPS52-213ENST00000461743 NFAT5O94916 1531 aa16.55■□□□□ 0.24
VPS52-213ENST00000461743 COL18A1P39060 1754 aa16.54■□□□□ 0.24
VPS52-213ENST00000461743 USP31Q70CQ4 1352 aa16.54■□□□□ 0.24
VPS52-213ENST00000461743 HSPA5P11021 654 aaKnown RBP16.54■□□□□ 0.24
VPS52-213ENST00000461743 CABLES1Q8TDN4 633 aa16.54■□□□□ 0.24
VPS52-213ENST00000461743 SLC12A5Q9H2X9 1139 aa16.53■□□□□ 0.24
VPS52-213ENST00000461743 OVOS2A0A0J9YW53 1432 aa16.53■□□□□ 0.24
VPS52-213ENST00000461743 OVOS2Q6IE36 1432 aa16.53■□□□□ 0.24
VPS52-213ENST00000461743 RGPD5Q99666 1765 aa16.52■□□□□ 0.24
VPS52-213ENST00000461743 POTEAQ6S8J7 498 aa16.52■□□□□ 0.24
VPS52-213ENST00000461743 USP21Q9UK80 565 aa16.52■□□□□ 0.24
VPS52-213ENST00000461743 GLI3P10071 1580 aa16.51■□□□□ 0.23
VPS52-213ENST00000461743 TRPC5Q9UL62 973 aaPredicted RBP16.51■□□□□ 0.23
VPS52-213ENST00000461743 WNK3Q9BYP7 1800 aa16.51■□□□□ 0.23
VPS52-213ENST00000461743 KIAA0232Q92628 1395 aa16.51■□□□□ 0.23
VPS52-213ENST00000461743 FAM208AQ9UK61 1670 aaKnown RBP16.5■□□□□ 0.23
VPS52-213ENST00000461743 NLRP6P59044 892 aa16.5■□□□□ 0.23
VPS52-213ENST00000461743 ILDR2Q71H61 639 aa16.5■□□□□ 0.23
VPS52-213ENST00000461743 UNC5CLQ8IV45 518 aa16.49■□□□□ 0.23
VPS52-213ENST00000461743 RBM6P78332 1123 aaKnown RBP16.48■□□□□ 0.23
VPS52-213ENST00000461743 KCNH5Q8NCM2 988 aa16.48■□□□□ 0.23
VPS52-213ENST00000461743 PRDM11Q9NQV5 511 aa16.48■□□□□ 0.23
VPS52-213ENST00000461743 GCP02774 474 aa16.47■□□□□ 0.23
VPS52-213ENST00000461743 RXRBP28702 533 aa16.47■□□□□ 0.23
VPS52-213ENST00000461743 NUTM2GQ5VZR2 741 aa16.47■□□□□ 0.23
VPS52-213ENST00000461743 BRWD3Q6RI45 1802 aa16.47■□□□□ 0.23
VPS52-213ENST00000461743 FAM83GA6ND36 823 aa16.46■□□□□ 0.23
VPS52-213ENST00000461743 QTRT2Q9H974 415 aaKnown RBP16.46■□□□□ 0.23
VPS52-213ENST00000461743 THSD7AQ9UPZ6 1657 aa16.46■□□□□ 0.23
VPS52-213ENST00000461743 CAMTA1Q9Y6Y1 1673 aa16.46■□□□□ 0.23
VPS52-213ENST00000461743 RGS12O14924 1447 aa16.45■□□□□ 0.22
VPS52-213ENST00000461743 PLEKHG5O94827 1062 aa16.45■□□□□ 0.22
VPS52-213ENST00000461743 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.45■□□□□ 0.22
VPS52-213ENST00000461743 AATKQ6ZMQ8 1374 aa16.45■□□□□ 0.22
VPS52-213ENST00000461743 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
VPS52-213ENST00000461743 COL5A2P05997 1499 aaPredicted RBP16.44■□□□□ 0.22
VPS52-213ENST00000461743 VPS72Q15906 364 aa16.44■□□□□ 0.22
VPS52-213ENST00000461743 NME9Q86XW9 330 aa16.43■□□□□ 0.22
VPS52-213ENST00000461743 BTG4Q9NY30 223 aa16.43■□□□□ 0.22
VPS52-213ENST00000461743 PARP4Q9UKK3 1724 aaKnown RBP16.42■□□□□ 0.22
VPS52-213ENST00000461743 ZC3H6P61129 1189 aaKnown RBP16.42■□□□□ 0.22
VPS52-213ENST00000461743 GJD4Q96KN9 370 aaPredicted RBP16.42■□□□□ 0.22
VPS52-213ENST00000461743 MAP2P11137 1827 aaKnown RBP16.42■□□□□ 0.22
VPS52-213ENST00000461743 SOCS7O14512 581 aa16.4■□□□□ 0.22
VPS52-213ENST00000461743 ARHGEF25Q86VW2 580 aa16.4■□□□□ 0.22
VPS52-213ENST00000461743 COG3Q96JB2 828 aa16.4■□□□□ 0.22
VPS52-213ENST00000461743 KIF7Q2M1P5 1343 aa16.4■□□□□ 0.22
VPS52-213ENST00000461743 NSD2O96028 1365 aa16.39■□□□□ 0.21
VPS52-213ENST00000461743 BLMP54132 1417 aaPredicted RBP16.39■□□□□ 0.21
VPS52-213ENST00000461743 CHRNA2Q15822 529 aa16.39■□□□□ 0.21
VPS52-213ENST00000461743 RTL1A6NKG5 1358 aa16.38■□□□□ 0.21
VPS52-213ENST00000461743 EP400Q96L91 3159 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms