RNA–Protein interactions for RNA: ENST00000460120.5

HPS3-202, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2 BASIC

Gene HPS3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-202ENST00000460120 TRIM35Q9UPQ4 493 aa23.27■■□□□ 1.32
HPS3-202ENST00000460120 USP32Q8NFA0 1604 aa23.26■■□□□ 1.31
HPS3-202ENST00000460120 NCKAP5LQ9HCH0 1330 aa23.26■■□□□ 1.31
HPS3-202ENST00000460120 HMOX1P09601 288 aa23.26■■□□□ 1.31
HPS3-202ENST00000460120 ZFYVE9O95405 1425 aa23.26■■□□□ 1.31
HPS3-202ENST00000460120 CD163L1Q9NR16 1453 aa23.24■■□□□ 1.31
HPS3-202ENST00000460120 ZRANB1Q9UGI0 708 aa23.24■■□□□ 1.31
HPS3-202ENST00000460120 ZKSCAN2Q63HK3 967 aa23.23■■□□□ 1.31
HPS3-202ENST00000460120 TXNDC2Q86VQ3 553 aa23.23■■□□□ 1.31
HPS3-202ENST00000460120 NINLQ9Y2I6 1382 aa23.23■■□□□ 1.31
HPS3-202ENST00000460120 SSH1Q8WYL5 1049 aa23.23■■□□□ 1.31
HPS3-202ENST00000460120 ALKQ9UM73 1620 aa23.22■■□□□ 1.31
HPS3-202ENST00000460120 ITPRIPQ8IWB1 547 aa23.22■■□□□ 1.31
HPS3-202ENST00000460120 DZIP1LQ8IYY4 767 aaKnown RBP23.22■■□□□ 1.31
HPS3-202ENST00000460120 THUMPD2Q9BTF0 503 aaKnown RBP23.22■■□□□ 1.31
HPS3-202ENST00000460120 PDZRN3Q9UPQ7 1066 aa23.22■■□□□ 1.31
HPS3-202ENST00000460120 PRKAR2BP31323 418 aa23.21■■□□□ 1.31
HPS3-202ENST00000460120 PMFBP1Q8TBY8 1022 aa23.21■■□□□ 1.31
HPS3-202ENST00000460120 MVPQ14764 893 aaKnown RBP23.2■■□□□ 1.3
HPS3-202ENST00000460120 PLPPR3Q6T4P5 718 aa23.2■■□□□ 1.3
HPS3-202ENST00000460120 NOB1Q9ULX3 412 aaKnown RBP23.19■■□□□ 1.3
HPS3-202ENST00000460120 EMILIN1Q9Y6C2 1016 aa23.19■■□□□ 1.3
HPS3-202ENST00000460120 TRIM27P14373 513 aa23.19■■□□□ 1.3
HPS3-202ENST00000460120 NME9Q86XW9 330 aa23.19■■□□□ 1.3
HPS3-202ENST00000460120 ESF1Q9H501 851 aaKnown RBP23.19■■□□□ 1.3
HPS3-202ENST00000460120 NUTM2FA1L443 756 aa23.18■■□□□ 1.3
HPS3-202ENST00000460120 RIMS2Q9UQ26 1411 aa23.17■■□□□ 1.3
HPS3-202ENST00000460120 POLKQ9UBT6 870 aa23.17■■□□□ 1.3
HPS3-202ENST00000460120 RWDD1Q9H446 243 aaPredicted RBP23.17■■□□□ 1.3
HPS3-202ENST00000460120 COL3A1P02461 1466 aaPredicted RBP23.16■■□□□ 1.3
HPS3-202ENST00000460120 ELL2O00472 640 aaPredicted RBP23.16■■□□□ 1.3
HPS3-202ENST00000460120 NLRP1Q9C000 1473 aa23.16■■□□□ 1.3
HPS3-202ENST00000460120 PHACTR3Q96KR7 559 aa23.15■■□□□ 1.3
HPS3-202ENST00000460120 ARHGEF40Q8TER5 1519 aa23.15■■□□□ 1.3
HPS3-202ENST00000460120 RRS1Q15050 365 aaKnown RBP23.14■■□□□ 1.3
HPS3-202ENST00000460120 CLTCQ00610 1675 aaKnown RBP23.14■■□□□ 1.29
HPS3-202ENST00000460120 NFKBIBQ15653 356 aa23.13■■□□□ 1.29
HPS3-202ENST00000460120 A2ML1A8K2U0 1454 aa23.13■■□□□ 1.29
HPS3-202ENST00000460120 USP19O94966 1318 aa23.12■■□□□ 1.29
HPS3-202ENST00000460120 ADGRB2O60241 1585 aa23.12■■□□□ 1.29
HPS3-202ENST00000460120 TMEM57Q8N5G2 664 aa23.12■■□□□ 1.29
HPS3-202ENST00000460120 METP08581 1390 aa23.12■■□□□ 1.29
HPS3-202ENST00000460120 ATF7IPQ6VMQ6 1270 aa23.11■■□□□ 1.29
HPS3-202ENST00000460120 WASLO00401 505 aaPredicted RBP23.1■■□□□ 1.29
HPS3-202ENST00000460120 SOX12O15370 315 aa23.1■■□□□ 1.29
HPS3-202ENST00000460120 RSPH6AQ9H0K4 717 aa23.1■■□□□ 1.29
HPS3-202ENST00000460120 DIP2BQ9P265 1576 aa23.09■■□□□ 1.29
HPS3-202ENST00000460120 PPIP5K1Q6PFW1 1433 aa23.08■■□□□ 1.29
HPS3-202ENST00000460120 FCHSD2O94868 740 aa23.08■■□□□ 1.28
HPS3-202ENST00000460120 NUDT16Q96DE0 195 aaKnown RBP23.08■■□□□ 1.28
HPS3-202ENST00000460120 RIMBP3CA6NJZ7 1639 aa23.07■■□□□ 1.28
HPS3-202ENST00000460120 RIMBP3BA6NNM3 1639 aa23.07■■□□□ 1.28
HPS3-202ENST00000460120 RIMBP3Q9UFD9 1639 aa23.07■■□□□ 1.28
HPS3-202ENST00000460120 SLKQ9H2G2 1235 aaPredicted RBP23.07■■□□□ 1.28
HPS3-202ENST00000460120 PNNQ9H307 717 aaKnown RBP23.06■■□□□ 1.28
HPS3-202ENST00000460120 LRRC7Q96NW7 1537 aa23.05■■□□□ 1.28
HPS3-202ENST00000460120 FRAT2O75474 233 aaPredicted RBP23.05■■□□□ 1.28
HPS3-202ENST00000460120 DCTN1Q14203 1278 aa23.05■■□□□ 1.28
HPS3-202ENST00000460120 TSPYL6Q8N831 410 aa23.05■■□□□ 1.28
HPS3-202ENST00000460120 SPRYD3Q8NCJ5 442 aa23.05■■□□□ 1.28
HPS3-202ENST00000460120 PNPLA6Q8IY17 1366 aa23.05■■□□□ 1.28
HPS3-202ENST00000460120 FAM83GA6ND36 823 aa23.04■■□□□ 1.28
HPS3-202ENST00000460120 USP35Q9P2H5 1018 aa23.04■■□□□ 1.28
HPS3-202ENST00000460120 DDX19BQ9UMR2 479 aa23.04■■□□□ 1.28
HPS3-202ENST00000460120 C1orf115Q9H7X2 142 aa23.04■■□□□ 1.28
HPS3-202ENST00000460120 CT47B1P0C2W7 299 aaPredicted RBP23.03■■□□□ 1.28
HPS3-202ENST00000460120 COG3Q96JB2 828 aa23.03■■□□□ 1.28
HPS3-202ENST00000460120 MED14O60244 1454 aa23.02■■□□□ 1.28
HPS3-202ENST00000460120 ZMYM3Q14202 1370 aa23.02■■□□□ 1.28
HPS3-202ENST00000460120 UPF2Q9HAU5 1272 aaKnown RBP23.02■■□□□ 1.28
HPS3-202ENST00000460120 AAMPQ13685 434 aa23.02■■□□□ 1.27
HPS3-202ENST00000460120 NFE2L2Q16236 605 aa23.02■■□□□ 1.27
HPS3-202ENST00000460120 IL16Q14005 1332 aa23.01■■□□□ 1.27
HPS3-202ENST00000460120 MFAP1P55081 439 aaKnown RBP23.01■■□□□ 1.27
HPS3-202ENST00000460120 NCBP3Q53F19 620 aaKnown RBP23.01■■□□□ 1.27
HPS3-202ENST00000460120 IL13P35225 146 aa23■■□□□ 1.27
HPS3-202ENST00000460120 IPO8O15397 1037 aaKnown RBP22.99■■□□□ 1.27
HPS3-202ENST00000460120 KIF20BQ96Q89 1820 aa22.99■■□□□ 1.27
HPS3-202ENST00000460120 KIF16BQ96L93 1317 aa22.98■■□□□ 1.27
HPS3-202ENST00000460120 ANKRD26Q9UPS8 1709 aa22.98■■□□□ 1.27
HPS3-202ENST00000460120 LNPKQ9C0E8 428 aa22.98■■□□□ 1.27
HPS3-202ENST00000460120 CCDC61Q9Y6R9 512 aa22.98■■□□□ 1.27
HPS3-202ENST00000460120 FAM135BQ49AJ0 1406 aa22.98■■□□□ 1.27
HPS3-202ENST00000460120 CEBPAP49715 358 aaPredicted RBP22.98■■□□□ 1.27
HPS3-202ENST00000460120 PPP6R1Q9UPN7 881 aa22.98■■□□□ 1.27
HPS3-202ENST00000460120 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.97■■□□□ 1.27
HPS3-202ENST00000460120 MBIPQ9NS73 344 aa22.97■■□□□ 1.27
HPS3-202ENST00000460120 SPATA31D1Q6ZQQ2 1576 aa22.96■■□□□ 1.27
HPS3-202ENST00000460120 ATP7BP35670 1465 aa22.96■■□□□ 1.27
HPS3-202ENST00000460120 AEBP1Q8IUX7 1158 aa22.96■■□□□ 1.27
HPS3-202ENST00000460120 SLC26A8Q96RN1 970 aa22.96■■□□□ 1.27
HPS3-202ENST00000460120 ZBTB40Q9NUA8 1239 aa22.96■■□□□ 1.27
HPS3-202ENST00000460120 PRR36Q9H6K5 1346 aa22.96■■□□□ 1.27
HPS3-202ENST00000460120 CPS1P31327 1500 aa22.95■■□□□ 1.26
HPS3-202ENST00000460120 EDC4Q6P2E9 1401 aaKnown RBP22.95■■□□□ 1.26
HPS3-202ENST00000460120 BECN1Q14457 450 aa22.95■■□□□ 1.26
HPS3-202ENST00000460120 VAMP4O75379 141 aa22.94■■□□□ 1.26
HPS3-202ENST00000460120 AGLP35573 1532 aa22.94■■□□□ 1.26
HPS3-202ENST00000460120 HDAC1Q13547 482 aaPredicted RBP22.93■■□□□ 1.26
HPS3-202ENST00000460120 C8orf58Q8NAV2 365 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms