RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 ZBTB3Q9H5J0 574 aa9.04□□□□□ -0.96
VPS41-209ENST00000457055 WFS1O76024 890 aa9.03□□□□□ -0.96
VPS41-209ENST00000457055 ZNF511Q8NB15 262 aa9.03□□□□□ -0.96
VPS41-209ENST00000457055 TLL2Q9Y6L7 1015 aa9.03□□□□□ -0.96
VPS41-209ENST00000457055 CFAP99D6REC4 459 aa9.02□□□□□ -0.97
VPS41-209ENST00000457055 HRCP23327 699 aa9.02□□□□□ -0.97
VPS41-209ENST00000457055 CTHP32929 405 aa9.02□□□□□ -0.97
VPS41-209ENST00000457055 RIC3Q7Z5B4 369 aa9.02□□□□□ -0.97
VPS41-209ENST00000457055 KIFC2Q96AC6 838 aa9.02□□□□□ -0.97
VPS41-209ENST00000457055 CSPP1Q1MSJ5 1256 aa9.01□□□□□ -0.97
VPS41-209ENST00000457055 LYPD8Q6UX82 237 aa9.01□□□□□ -0.97
VPS41-209ENST00000457055 CAPN5O15484 640 aaPredicted RBP9□□□□□ -0.97
VPS41-209ENST00000457055 PDE4DQ08499 809 aa9□□□□□ -0.97
VPS41-209ENST00000457055 PRPF38BQ5VTL8 546 aaKnown RBP9□□□□□ -0.97
VPS41-209ENST00000457055 CABLES1Q8TDN4 633 aa9□□□□□ -0.97
VPS41-209ENST00000457055 BMP1P13497 986 aa8.99□□□□□ -0.97
VPS41-209ENST00000457055 VARSP26640 1264 aaKnown RBP8.99□□□□□ -0.97
VPS41-209ENST00000457055 NFX1Q12986 1120 aaKnown RBP8.99□□□□□ -0.97
VPS41-209ENST00000457055 PLEKHG3A1L390 1219 aa8.98□□□□□ -0.97
VPS41-209ENST00000457055 MAP10Q9P2G4 905 aa8.98□□□□□ -0.97
VPS41-209ENST00000457055 F12P00748 615 aaPredicted RBP8.97□□□□□ -0.97
VPS41-209ENST00000457055 MYSM1Q5VVJ2 828 aa8.97□□□□□ -0.97
VPS41-209ENST00000457055 SLC24A3Q9HC58 644 aa8.97□□□□□ -0.97
VPS41-209ENST00000457055 NNTQ13423 1086 aa8.96□□□□□ -0.98
VPS41-209ENST00000457055 TRIM46Q7Z4K8 759 aa8.96□□□□□ -0.98
VPS41-209ENST00000457055 TSC1Q92574 1164 aa8.96□□□□□ -0.98
VPS41-209ENST00000457055 LIMD1Q9UGP4 676 aa8.96□□□□□ -0.98
VPS41-209ENST00000457055 NUTM2BA6NNL0 878 aaPredicted RBP8.95□□□□□ -0.98
VPS41-209ENST00000457055 NUTM2EB1AL46 878 aaPredicted RBP8.95□□□□□ -0.98
VPS41-209ENST00000457055 TERTO14746 1132 aaKnown RBP8.95□□□□□ -0.98
VPS41-209ENST00000457055 QPCTQ16769 361 aa8.95□□□□□ -0.98
VPS41-209ENST00000457055 NUTM2DQ5VT03 806 aaPredicted RBP8.95□□□□□ -0.98
VPS41-209ENST00000457055 NUTM2AQ8IVF1 878 aaPredicted RBP8.95□□□□□ -0.98
VPS41-209ENST00000457055 MPNDQ8N594 471 aa8.95□□□□□ -0.98
VPS41-209ENST00000457055 FAM174AQ8TBP5 190 aa8.95□□□□□ -0.98
VPS41-209ENST00000457055 BCANQ96GW7 911 aa8.95□□□□□ -0.98
VPS41-209ENST00000457055 FOXJ1Q92949 421 aa8.94□□□□□ -0.98
VPS41-209ENST00000457055 PER1O15534 1290 aaPredicted RBP8.93□□□□□ -0.98
VPS41-209ENST00000457055 EIF5BO60841 1220 aaKnown RBP8.93□□□□□ -0.98
VPS41-209ENST00000457055 TUSC1Q2TAM9 212 aa8.93□□□□□ -0.98
VPS41-209ENST00000457055 ADH1CP00326 375 aa8.92□□□□□ -0.98
VPS41-209ENST00000457055 AGERQ15109 404 aa8.92□□□□□ -0.98
VPS41-209ENST00000457055 WIPF1O43516 503 aa8.91□□□□□ -0.98
VPS41-209ENST00000457055 LILRB3O75022 631 aa8.91□□□□□ -0.98
VPS41-209ENST00000457055 CLK2P49760 499 aaKnown RBP8.91□□□□□ -0.98
VPS41-209ENST00000457055 WDR4P57081 412 aaKnown RBP8.91□□□□□ -0.98
VPS41-209ENST00000457055 ARID5BQ14865 1188 aa8.91□□□□□ -0.98
VPS41-209ENST00000457055 TIMP2P16035 220 aa8.9□□□□□ -0.98
VPS41-209ENST00000457055 LCE2CQ5TA81 110 aa8.9□□□□□ -0.98
VPS41-209ENST00000457055 HELBQ8NG08 1087 aaPredicted RBP8.9□□□□□ -0.98
VPS41-209ENST00000457055 C4orf48Q5BLP8 95 aa8.89□□□□□ -0.99
VPS41-209ENST00000457055 BPHLQ86WA6 291 aaPredicted RBP8.89□□□□□ -0.99
VPS41-209ENST00000457055 ZFP42Q96MM3 310 aa8.89□□□□□ -0.99
VPS41-209ENST00000457055 CDK15Q96Q40 435 aa8.89□□□□□ -0.99
VPS41-209ENST00000457055 INSM1Q01101 510 aaPredicted RBP8.88□□□□□ -0.99
VPS41-209ENST00000457055 RTL5Q5HYW3 569 aaPredicted RBP8.88□□□□□ -0.99
VPS41-209ENST00000457055 MRPL14Q6P1L8 145 aaKnown RBP8.88□□□□□ -0.99
VPS41-209ENST00000457055 ARMC2Q8NEN0 867 aa8.88□□□□□ -0.99
VPS41-209ENST00000457055 SLC16A10Q8TF71 515 aa8.88□□□□□ -0.99
VPS41-209ENST00000457055 NXF1Q9UBU9 619 aaKnown RBP8.88□□□□□ -0.99
VPS41-209ENST00000457055 SCARF1Q14162 830 aa8.87□□□□□ -0.99
VPS41-209ENST00000457055 RSPH6AQ9H0K4 717 aa8.87□□□□□ -0.99
VPS41-209ENST00000457055 POLR3EQ9NVU0 708 aa8.87□□□□□ -0.99
VPS41-209ENST00000457055 NBPF14Q5TI25 921 aa8.86□□□□□ -0.99
VPS41-209ENST00000457055 PURBQ96QR8 312 aaKnown RBP8.86□□□□□ -0.99
VPS41-209ENST00000457055 NR5A1Q13285 461 aa8.85□□□□□ -0.99
VPS41-209ENST00000457055 KLF16Q9BXK1 252 aaPredicted RBP8.85□□□□□ -0.99
VPS41-209ENST00000457055 ZIC2O95409 532 aaPredicted RBP8.84□□□□□ -0.99
VPS41-209ENST00000457055 NR3C2P08235 984 aa8.84□□□□□ -0.99
VPS41-209ENST00000457055 ZFAND3Q9H8U3 227 aa8.84□□□□□ -0.99
VPS41-209ENST00000457055 STK17AQ9UEE5 414 aa8.84□□□□□ -0.99
VPS41-209ENST00000457055 MAGEB6P1A0A0J9YX57 407 aa8.83□□□□□ -1
VPS41-209ENST00000457055 GRM5P41594 1212 aa8.83□□□□□ -1
VPS41-209ENST00000457055 VEGFBP49765 207 aa8.83□□□□□ -1
VPS41-209ENST00000457055 SH3RF1Q7Z6J0 888 aa8.83□□□□□ -1
VPS41-209ENST00000457055 NPAS3Q8IXF0 933 aa8.83□□□□□ -1
VPS41-209ENST00000457055 ITPKCQ96DU7 683 aa8.83□□□□□ -1
VPS41-209ENST00000457055 C1QTNF2Q9BXJ5 285 aa8.83□□□□□ -1
VPS41-209ENST00000457055 FSHRP23945 695 aa8.82□□□□□ -1
VPS41-209ENST00000457055 TPRNQ4KMQ1 711 aa8.82□□□□□ -1
VPS41-209ENST00000457055 SH3BP5LQ7L8J4 393 aa8.82□□□□□ -1
VPS41-209ENST00000457055 IRF7Q92985 503 aa8.81□□□□□ -1
VPS41-209ENST00000457055 CARD14Q9BXL6 1004 aa8.81□□□□□ -1
VPS41-209ENST00000457055 H3BM21 787 aa8.8□□□□□ -1
VPS41-209ENST00000457055 C6orf118Q5T5N4 469 aa8.8□□□□□ -1
VPS41-209ENST00000457055 VASH1Q7L8A9 365 aaPredicted RBP8.8□□□□□ -1
VPS41-209ENST00000457055 PODXL2Q9NZ53 605 aa8.8□□□□□ -1
VPS41-209ENST00000457055 MAP4K5Q9Y4K4 846 aa8.8□□□□□ -1
VPS41-209ENST00000457055 SOBPA7XYQ1 873 aa8.79□□□□□ -1
VPS41-209ENST00000457055 GMPRP36959 345 aa8.79□□□□□ -1
VPS41-209ENST00000457055 CTDSPL2Q05D32 466 aa8.79□□□□□ -1
VPS41-209ENST00000457055 TRMT44Q8IYL2 757 aaKnown RBP8.79□□□□□ -1
VPS41-209ENST00000457055 GPKOWQ92917 476 aaPredicted RBP eCLIP8.79□□□□□ -15e-7■■■■■ 43.5
VPS41-209ENST00000457055 UPP2O95045 317 aa8.78□□□□□ -1
VPS41-209ENST00000457055 KDM4CQ9H3R0 1056 aa8.78□□□□□ -1
VPS41-209ENST00000457055 GPBP1L1Q9HC44 474 aaPredicted RBP8.78□□□□□ -1
VPS41-209ENST00000457055 BMP2P12643 396 aa8.77□□□□□ -1.01
VPS41-209ENST00000457055 SKIV2LQ15477 1246 aaKnown RBP8.77□□□□□ -1.01
VPS41-209ENST00000457055 SH3D19Q5HYK7 790 aa8.77□□□□□ -1.01
VPS41-209ENST00000457055 LINC00528Q8N1L1 170 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms