RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 EIF4G2P78344 907 aaKnown RBP eCLIP14.13□□□□□ -0.15
ATG4A-206ENST00000457035 LRRC59Q96AG4 307 aaKnown RBP14.13□□□□□ -0.15
ATG4A-206ENST00000457035 PUS7Q96PZ0 661 aaKnown RBP14.13□□□□□ -0.15
ATG4A-206ENST00000457035 ZBTB12Q9Y330 459 aaPredicted RBP14.13□□□□□ -0.15
ATG4A-206ENST00000457035 TOPAZ1Q8N9V7 1692 aa14.12□□□□□ -0.15
ATG4A-206ENST00000457035 NUTM2BA6NNL0 878 aaPredicted RBP14.12□□□□□ -0.15
ATG4A-206ENST00000457035 NUTM2EB1AL46 878 aaPredicted RBP14.12□□□□□ -0.15
ATG4A-206ENST00000457035 HSPA5P11021 654 aaKnown RBP14.12□□□□□ -0.15
ATG4A-206ENST00000457035 XPCQ01831 940 aaPredicted RBP14.12□□□□□ -0.15
ATG4A-206ENST00000457035 KRT28Q7Z3Y7 464 aa14.12□□□□□ -0.15
ATG4A-206ENST00000457035 NUTM2AQ8IVF1 878 aaPredicted RBP14.12□□□□□ -0.15
ATG4A-206ENST00000457035 CABP1Q9NZU7 370 aa14.12□□□□□ -0.15
ATG4A-206ENST00000457035 PSME1Q06323 249 aa14.11□□□□□ -0.15
ATG4A-206ENST00000457035 PXDNQ92626 1479 aa14.11□□□□□ -0.15
ATG4A-206ENST00000457035 NGDNQ8NEJ9 315 aaKnown RBP14.1□□□□□ -0.15
ATG4A-206ENST00000457035 ACEP12821 1306 aa14.1□□□□□ -0.15
ATG4A-206ENST00000457035 POLR3AO14802 1390 aaPredicted RBP14.09□□□□□ -0.15
ATG4A-206ENST00000457035 PPIP5K1Q6PFW1 1433 aa14.09□□□□□ -0.15
ATG4A-206ENST00000457035 TMF1P82094 1093 aa14.09□□□□□ -0.15
ATG4A-206ENST00000457035 ATAD2Q6PL18 1390 aa14.09□□□□□ -0.15
ATG4A-206ENST00000457035 ZNF772Q68DY9 489 aaPredicted RBP14.08□□□□□ -0.16
ATG4A-206ENST00000457035 SLC12A5Q9H2X9 1139 aa14.07□□□□□ -0.16
ATG4A-206ENST00000457035 SPATA31A3Q5VYP0 1347 aa14.07□□□□□ -0.16
ATG4A-206ENST00000457035 SBNO1A3KN83 1393 aa14.07□□□□□ -0.16
ATG4A-206ENST00000457035 TRPM3Q9HCF6 1732 aaPredicted RBP14.06□□□□□ -0.16
ATG4A-206ENST00000457035 PNPLA6Q8IY17 1366 aa14.06□□□□□ -0.16
ATG4A-206ENST00000457035 ZNF692Q9BU19 519 aaPredicted RBP14.05□□□□□ -0.16
ATG4A-206ENST00000457035 C11orf95C9JLR9 678 aaPredicted RBP14.04□□□□□ -0.16
ATG4A-206ENST00000457035 CDCA8Q53HL2 280 aa14.04□□□□□ -0.16
ATG4A-206ENST00000457035 TMC1Q8TDI8 760 aa14.04□□□□□ -0.16
ATG4A-206ENST00000457035 AFF2P51816 1311 aa14.04□□□□□ -0.16
ATG4A-206ENST00000457035 CPSF1Q10570 1443 aaKnown RBP14.04□□□□□ -0.16
ATG4A-206ENST00000457035 AKAP12Q02952 1782 aa14.04□□□□□ -0.16
ATG4A-206ENST00000457035 ALS2Q96Q42 1657 aa14.02□□□□□ -0.16
ATG4A-206ENST00000457035 CD163L1Q9NR16 1453 aa14.02□□□□□ -0.16
ATG4A-206ENST00000457035 TNS3Q68CZ2 1445 aa14.02□□□□□ -0.16
ATG4A-206ENST00000457035 SSH2Q76I76 1423 aa14.02□□□□□ -0.16
ATG4A-206ENST00000457035 PAK3O75914 559 aaPredicted RBP14.02□□□□□ -0.17
ATG4A-206ENST00000457035 RXRBP28702 533 aa14.02□□□□□ -0.17
ATG4A-206ENST00000457035 ZEB1P37275 1124 aaPredicted RBP14.02□□□□□ -0.17
ATG4A-206ENST00000457035 C8orf37Q96NL8 207 aa14.02□□□□□ -0.17
ATG4A-206ENST00000457035 RBM42Q9BTD8 480 aaKnown RBP14.02□□□□□ -0.17
ATG4A-206ENST00000457035 MARF1Q9Y4F3 1742 aaKnown RBP14.01□□□□□ -0.17
ATG4A-206ENST00000457035 USP6P35125 1406 aa14.01□□□□□ -0.17
ATG4A-206ENST00000457035 BRD4O60885 1362 aaPredicted RBP14.01□□□□□ -0.17
ATG4A-206ENST00000457035 COL22A1Q8NFW1 1626 aaPredicted RBP14.01□□□□□ -0.17
ATG4A-206ENST00000457035 NINLQ9Y2I6 1382 aa14□□□□□ -0.17
ATG4A-206ENST00000457035 LMOD2Q6P5Q4 547 aa14□□□□□ -0.17
ATG4A-206ENST00000457035 ARHGEF10O15013 1369 aa13.99□□□□□ -0.17
ATG4A-206ENST00000457035 UPF1Q92900 1129 aaKnown RBP eCLIP13.99□□□□□ -0.17
ATG4A-206ENST00000457035 TERF2IPQ9NYB0 399 aa13.99□□□□□ -0.17
ATG4A-206ENST00000457035 MON2Q7Z3U7 1717 aa13.98□□□□□ -0.17
ATG4A-206ENST00000457035 KTN1Q86UP2 1357 aaKnown RBP13.98□□□□□ -0.17
ATG4A-206ENST00000457035 TTC21BQ7Z4L5 1316 aa13.98□□□□□ -0.17
ATG4A-206ENST00000457035 ADAMTS2O95450 1211 aa13.98□□□□□ -0.17
ATG4A-206ENST00000457035 HDGFL2Q7Z4V5 671 aaPredicted RBP13.98□□□□□ -0.17
ATG4A-206ENST00000457035 ABTB2Q8N961 1025 aa13.98□□□□□ -0.17
ATG4A-206ENST00000457035 CABLES1Q8TDN4 633 aa13.98□□□□□ -0.17
ATG4A-206ENST00000457035 CDK12Q9NYV4 1490 aaPredicted RBP13.98□□□□□ -0.17
ATG4A-206ENST00000457035 A0A1W2PP64 1363 aa13.97□□□□□ -0.17
ATG4A-206ENST00000457035 MYOM1P52179 1685 aa13.96□□□□□ -0.17
ATG4A-206ENST00000457035 NUTM2GQ5VZR2 741 aa13.96□□□□□ -0.17
ATG4A-206ENST00000457035 RGS12O14924 1447 aa13.96□□□□□ -0.18
ATG4A-206ENST00000457035 ANKRD36BQ8N2N9 1353 aa13.96□□□□□ -0.18
ATG4A-206ENST00000457035 TTC21AQ8NDW8 1320 aa13.95□□□□□ -0.18
ATG4A-206ENST00000457035 NGLY1Q96IV0 654 aa13.95□□□□□ -0.18
ATG4A-206ENST00000457035 POLR3GLQ9BT43 218 aa13.95□□□□□ -0.18
ATG4A-206ENST00000457035 QTRT2Q9H974 415 aaKnown RBP13.95□□□□□ -0.18
ATG4A-206ENST00000457035 KIF7Q2M1P5 1343 aa13.94□□□□□ -0.18
ATG4A-206ENST00000457035 PLEKHG5O94827 1062 aa13.94□□□□□ -0.18
ATG4A-206ENST00000457035 NLRP6P59044 892 aa13.94□□□□□ -0.18
ATG4A-206ENST00000457035 NRKQ7Z2Y5 1582 aa13.94□□□□□ -0.18
ATG4A-206ENST00000457035 NLRP13Q86W25 1043 aa13.94□□□□□ -0.18
ATG4A-206ENST00000457035 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.94□□□□□ -0.18
ATG4A-206ENST00000457035 CARD14Q9BXL6 1004 aa13.94□□□□□ -0.18
ATG4A-206ENST00000457035 CRYBG1Q9Y4K1 1723 aa13.94□□□□□ -0.18
ATG4A-206ENST00000457035 EDC4Q6P2E9 1401 aaKnown RBP13.93□□□□□ -0.18
ATG4A-206ENST00000457035 RBM6P78332 1123 aaKnown RBP13.93□□□□□ -0.18
ATG4A-206ENST00000457035 PIK3C2AO00443 1686 aa13.93□□□□□ -0.18
ATG4A-206ENST00000457035 ABCA3Q99758 1704 aa13.93□□□□□ -0.18
ATG4A-206ENST00000457035 NME9Q86XW9 330 aa13.92□□□□□ -0.18
ATG4A-206ENST00000457035 ZRANB1Q9UGI0 708 aa13.92□□□□□ -0.18
ATG4A-206ENST00000457035 USP19O94966 1318 aa13.91□□□□□ -0.18
ATG4A-206ENST00000457035 WASHC2AQ641Q2 1341 aa13.91□□□□□ -0.18
ATG4A-206ENST00000457035 FAM83GA6ND36 823 aa13.91□□□□□ -0.18
ATG4A-206ENST00000457035 PANK3Q9H999 370 aa13.91□□□□□ -0.18
ATG4A-206ENST00000457035 USP31Q70CQ4 1352 aa13.91□□□□□ -0.18
ATG4A-206ENST00000457035 FYB1O15117 783 aa13.9□□□□□ -0.18
ATG4A-206ENST00000457035 GCP02774 474 aa13.9□□□□□ -0.18
ATG4A-206ENST00000457035 HAP1P54257 671 aaPredicted RBP13.9□□□□□ -0.18
ATG4A-206ENST00000457035 FNBP4Q8N3X1 1017 aaPredicted RBP13.9□□□□□ -0.18
ATG4A-206ENST00000457035 USP21Q9UK80 565 aa13.9□□□□□ -0.18
ATG4A-206ENST00000457035 CCDC7Q96M83 1385 aa13.9□□□□□ -0.18
ATG4A-206ENST00000457035 PHRF1Q9P1Y6 1649 aaKnown RBP13.89□□□□□ -0.19
ATG4A-206ENST00000457035 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.88□□□□□ -0.19
ATG4A-206ENST00000457035 ZC3H6P61129 1189 aaKnown RBP13.88□□□□□ -0.19
ATG4A-206ENST00000457035 USP54Q70EL1 1684 aa13.88□□□□□ -0.19
ATG4A-206ENST00000457035 TRPC5Q9UL62 973 aaPredicted RBP13.87□□□□□ -0.19
ATG4A-206ENST00000457035 SLIT3O75094 1523 aa13.86□□□□□ -0.19
ATG4A-206ENST00000457035 BRWD3Q6RI45 1802 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms