RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 PNPLA6Q8IY17 1366 aa23.75■■□□□ 1.39
SEMA3B-209ENST00000456560 RTL5Q5HYW3 569 aaPredicted RBP23.74■■□□□ 1.39
SEMA3B-209ENST00000456560 CANXP27824 592 aaKnown RBP23.74■■□□□ 1.39
SEMA3B-209ENST00000456560 WAPLQ7Z5K2 1190 aa23.74■■□□□ 1.39
SEMA3B-209ENST00000456560 NRXN3Q9Y4C0 1643 aa23.74■■□□□ 1.39
SEMA3B-209ENST00000456560 COG6Q9Y2V7 657 aa23.73■■□□□ 1.39
SEMA3B-209ENST00000456560 IGHDP01880 384 aa23.72■■□□□ 1.39
SEMA3B-209ENST00000456560 CLUAP1Q96AJ1 413 aa23.72■■□□□ 1.39
SEMA3B-209ENST00000456560 ATP7BP35670 1465 aa23.72■■□□□ 1.39
SEMA3B-209ENST00000456560 FER1L4A9Z1Z3 1794 aa23.71■■□□□ 1.39
SEMA3B-209ENST00000456560 U2SURPO15042 1029 aaKnown RBP23.71■■□□□ 1.39
SEMA3B-209ENST00000456560 TMPOP42166 694 aaKnown RBP23.71■■□□□ 1.39
SEMA3B-209ENST00000456560 FRAT1Q92837 279 aaPredicted RBP23.71■■□□□ 1.39
SEMA3B-209ENST00000456560 FAM161AQ3B820 660 aa23.7■■□□□ 1.38
SEMA3B-209ENST00000456560 AAMPQ13685 434 aa23.69■■□□□ 1.38
SEMA3B-209ENST00000456560 TRIM35Q9UPQ4 493 aa23.69■■□□□ 1.38
SEMA3B-209ENST00000456560 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.69■■□□□ 1.38
SEMA3B-209ENST00000456560 C8orf34Q49A92 452 aa23.68■■□□□ 1.38
SEMA3B-209ENST00000456560 DIAPH1O60610 1272 aaKnown RBP23.68■■□□□ 1.38
SEMA3B-209ENST00000456560 CT47B1P0C2W7 299 aaPredicted RBP23.68■■□□□ 1.38
SEMA3B-209ENST00000456560 CDC42BPGQ6DT37 1551 aa23.67■■□□□ 1.38
SEMA3B-209ENST00000456560 RLBP1P12271 317 aa23.66■■□□□ 1.38
SEMA3B-209ENST00000456560 METP08581 1390 aa23.66■■□□□ 1.38
SEMA3B-209ENST00000456560 IL16Q14005 1332 aa23.66■■□□□ 1.38
SEMA3B-209ENST00000456560 TNNQ9UQP3 1299 aa23.65■■□□□ 1.38
SEMA3B-209ENST00000456560 MAPK8IP3Q9UPT6 1336 aa23.65■■□□□ 1.38
SEMA3B-209ENST00000456560 RGS3P49796 1198 aa23.65■■□□□ 1.38
SEMA3B-209ENST00000456560 CPSF1Q10570 1443 aaKnown RBP23.65■■□□□ 1.38
SEMA3B-209ENST00000456560 TNRQ92752 1358 aa23.65■■□□□ 1.38
SEMA3B-209ENST00000456560 C3P01024 1663 aa23.64■■□□□ 1.38
SEMA3B-209ENST00000456560 WASLO00401 505 aaPredicted RBP23.64■■□□□ 1.37
SEMA3B-209ENST00000456560 SIRT1Q96EB6 747 aa23.64■■□□□ 1.37
SEMA3B-209ENST00000456560 BCL2L13Q9BXK5 485 aa23.64■■□□□ 1.37
SEMA3B-209ENST00000456560 PNNQ9H307 717 aaKnown RBP23.63■■□□□ 1.37
SEMA3B-209ENST00000456560 POLKQ9UBT6 870 aa23.63■■□□□ 1.37
SEMA3B-209ENST00000456560 KNDC1Q76NI1 1749 aa23.63■■□□□ 1.37
SEMA3B-209ENST00000456560 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.62■■□□□ 1.37
SEMA3B-209ENST00000456560 TSR2Q969E8 191 aaKnown RBP23.62■■□□□ 1.37
SEMA3B-209ENST00000456560 TECPR2O15040 1411 aa23.62■■□□□ 1.37
SEMA3B-209ENST00000456560 RIMS1Q86UR5 1692 aaKnown RBP23.62■■□□□ 1.37
SEMA3B-209ENST00000456560 DDRGK1Q96HY6 314 aa23.61■■□□□ 1.37
SEMA3B-209ENST00000456560 FAM135BQ49AJ0 1406 aa23.61■■□□□ 1.37
SEMA3B-209ENST00000456560 FCHSD2O94868 740 aa23.61■■□□□ 1.37
SEMA3B-209ENST00000456560 EDC4Q6P2E9 1401 aaKnown RBP23.6■■□□□ 1.37
SEMA3B-209ENST00000456560 RIPK4P57078 832 aa23.6■■□□□ 1.37
SEMA3B-209ENST00000456560 EXOSC9Q06265 439 aaKnown RBP23.6■■□□□ 1.37
SEMA3B-209ENST00000456560 PPIP5K1Q6PFW1 1433 aa23.6■■□□□ 1.37
SEMA3B-209ENST00000456560 PMFBP1Q8TBY8 1022 aa23.59■■□□□ 1.37
SEMA3B-209ENST00000456560 PCDHB15Q9Y5E8 787 aa23.59■■□□□ 1.37
SEMA3B-209ENST00000456560 HDGFP51858 240 aaKnown RBP23.59■■□□□ 1.37
SEMA3B-209ENST00000456560 TXNDC2Q86VQ3 553 aa23.59■■□□□ 1.37
SEMA3B-209ENST00000456560 ZKSCAN2Q63HK3 967 aa23.58■■□□□ 1.37
SEMA3B-209ENST00000456560 LRRC7Q96NW7 1537 aa23.58■■□□□ 1.36
SEMA3B-209ENST00000456560 MAP2P11137 1827 aaKnown RBP23.57■■□□□ 1.36
SEMA3B-209ENST00000456560 ADAMTSL3P82987 1691 aa23.57■■□□□ 1.36
SEMA3B-209ENST00000456560 CPS1P31327 1500 aa23.57■■□□□ 1.36
SEMA3B-209ENST00000456560 FBLN1P23142 703 aa23.56■■□□□ 1.36
SEMA3B-209ENST00000456560 RSPH6AQ9H0K4 717 aa23.56■■□□□ 1.36
SEMA3B-209ENST00000456560 MVPQ14764 893 aaKnown RBP23.56■■□□□ 1.36
SEMA3B-209ENST00000456560 NUDT16Q96DE0 195 aaKnown RBP23.56■■□□□ 1.36
SEMA3B-209ENST00000456560 UBR1Q8IWV7 1749 aa23.55■■□□□ 1.36
SEMA3B-209ENST00000456560 DZIP1LQ8IYY4 767 aaKnown RBP23.54■■□□□ 1.36
SEMA3B-209ENST00000456560 TMEM2Q9UHN6 1383 aa23.54■■□□□ 1.36
SEMA3B-209ENST00000456560 VIRMAQ69YN4 1812 aaKnown RBP23.54■■□□□ 1.36
SEMA3B-209ENST00000456560 SSH1Q8WYL5 1049 aa23.53■■□□□ 1.36
SEMA3B-209ENST00000456560 AATKQ6ZMQ8 1374 aa23.53■■□□□ 1.36
SEMA3B-209ENST00000456560 MON2Q7Z3U7 1717 aa23.53■■□□□ 1.36
SEMA3B-209ENST00000456560 SMC4Q9NTJ3 1288 aa23.53■■□□□ 1.36
SEMA3B-209ENST00000456560 PRKAR2BP31323 418 aa23.52■■□□□ 1.36
SEMA3B-209ENST00000456560 NME9Q86XW9 330 aa23.52■■□□□ 1.36
SEMA3B-209ENST00000456560 CCDC61Q9Y6R9 512 aa23.52■■□□□ 1.36
SEMA3B-209ENST00000456560 LAS1LQ9Y4W2 734 aaKnown RBP23.51■■□□□ 1.35
SEMA3B-209ENST00000456560 CDK12Q9NYV4 1490 aaPredicted RBP23.51■■□□□ 1.35
SEMA3B-209ENST00000456560 PPM1GO15355 546 aaPredicted RBP23.51■■□□□ 1.35
SEMA3B-209ENST00000456560 AKAP12Q02952 1782 aa23.5■■□□□ 1.35
SEMA3B-209ENST00000456560 IL13P35225 146 aa23.5■■□□□ 1.35
SEMA3B-209ENST00000456560 RWDD1Q9H446 243 aaPredicted RBP23.5■■□□□ 1.35
SEMA3B-209ENST00000456560 EMILIN1Q9Y6C2 1016 aa23.5■■□□□ 1.35
SEMA3B-209ENST00000456560 ZRANB1Q9UGI0 708 aa23.49■■□□□ 1.35
SEMA3B-209ENST00000456560 ADAMTS13Q76LX8 1427 aa23.49■■□□□ 1.35
SEMA3B-209ENST00000456560 NCKAP5LQ9HCH0 1330 aa23.49■■□□□ 1.35
SEMA3B-209ENST00000456560 TRIM27P14373 513 aa23.49■■□□□ 1.35
SEMA3B-209ENST00000456560 FTSJ3Q8IY81 847 aaKnown RBP23.48■■□□□ 1.35
SEMA3B-209ENST00000456560 PRR36Q9H6K5 1346 aa23.47■■□□□ 1.35
SEMA3B-209ENST00000456560 NEFMP07197 916 aa23.47■■□□□ 1.35
SEMA3B-209ENST00000456560 NFE2L2Q16236 605 aa23.47■■□□□ 1.35
SEMA3B-209ENST00000456560 ATF7IPQ6VMQ6 1270 aa23.47■■□□□ 1.35
SEMA3B-209ENST00000456560 PHACTR3Q96KR7 559 aa23.47■■□□□ 1.35
SEMA3B-209ENST00000456560 ROBO2Q9HCK4 1378 aa23.47■■□□□ 1.35
SEMA3B-209ENST00000456560 PDZRN3Q9UPQ7 1066 aa23.47■■□□□ 1.35
SEMA3B-209ENST00000456560 ITSN1Q15811 1721 aa23.46■■□□□ 1.35
SEMA3B-209ENST00000456560 ZNF692Q9BU19 519 aaPredicted RBP23.45■■□□□ 1.35
SEMA3B-209ENST00000456560 USP35Q9P2H5 1018 aa23.45■■□□□ 1.35
SEMA3B-209ENST00000456560 NOB1Q9ULX3 412 aaKnown RBP23.45■■□□□ 1.35
SEMA3B-209ENST00000456560 ALDH1L2Q3SY69 923 aa23.45■■□□□ 1.34
SEMA3B-209ENST00000456560 COG3Q96JB2 828 aa23.45■■□□□ 1.34
SEMA3B-209ENST00000456560 HMOX1P09601 288 aa23.44■■□□□ 1.34
SEMA3B-209ENST00000456560 USP19O94966 1318 aa23.44■■□□□ 1.34
SEMA3B-209ENST00000456560 DDX19BQ9UMR2 479 aa23.44■■□□□ 1.34
SEMA3B-209ENST00000456560 PLEKHG1Q9ULL1 1385 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms