RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 TNS3Q68CZ2 1445 aa16.45■□□□□ 0.22
LINC00339-205ENST00000452322 SSH2Q76I76 1423 aa16.45■□□□□ 0.22
LINC00339-205ENST00000452322 LRRC59Q96AG4 307 aaKnown RBP16.45■□□□□ 0.22
LINC00339-205ENST00000452322 EDC4Q6P2E9 1401 aaKnown RBP16.44■□□□□ 0.22
LINC00339-205ENST00000452322 SPATA31A3Q5VYP0 1347 aa16.44■□□□□ 0.22
LINC00339-205ENST00000452322 ALS2Q96Q42 1657 aa16.43■□□□□ 0.22
LINC00339-205ENST00000452322 SHPRHQ149N8 1683 aa16.42■□□□□ 0.22
LINC00339-205ENST00000452322 ARHGEF10O15013 1369 aa16.41■□□□□ 0.22
LINC00339-205ENST00000452322 JCADQ9P266 1359 aa16.41■□□□□ 0.22
LINC00339-205ENST00000452322 ZNF316A6NFI3 1004 aaPredicted RBP16.41■□□□□ 0.22
LINC00339-205ENST00000452322 PAK3O75914 559 aaPredicted RBP16.41■□□□□ 0.22
LINC00339-205ENST00000452322 TTC21BQ7Z4L5 1316 aa16.41■□□□□ 0.22
LINC00339-205ENST00000452322 TTC21AQ8NDW8 1320 aa16.41■□□□□ 0.22
LINC00339-205ENST00000452322 PANK3Q9H999 370 aa16.4■□□□□ 0.22
LINC00339-205ENST00000452322 COL22A1Q8NFW1 1626 aaPredicted RBP16.4■□□□□ 0.22
LINC00339-205ENST00000452322 PNPLA6Q8IY17 1366 aa16.4■□□□□ 0.22
LINC00339-205ENST00000452322 ILDR1Q86SU0 546 aaPredicted RBP16.39■□□□□ 0.21
LINC00339-205ENST00000452322 NSD3Q9BZ95 1437 aa16.39■□□□□ 0.21
LINC00339-205ENST00000452322 PIK3C2AO00443 1686 aa16.39■□□□□ 0.21
LINC00339-205ENST00000452322 CARD14Q9BXL6 1004 aa16.38■□□□□ 0.21
LINC00339-205ENST00000452322 MED1Q15648 1581 aaPredicted RBP16.38■□□□□ 0.21
LINC00339-205ENST00000452322 ABTB2Q8N961 1025 aa16.38■□□□□ 0.21
LINC00339-205ENST00000452322 LMOD2Q6P5Q4 547 aa16.37■□□□□ 0.21
LINC00339-205ENST00000452322 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.37■□□□□ 0.21
LINC00339-205ENST00000452322 USP54Q70EL1 1684 aa16.36■□□□□ 0.21
LINC00339-205ENST00000452322 SPATA31A6Q5VVP1 1343 aa16.35■□□□□ 0.21
LINC00339-205ENST00000452322 USP31Q70CQ4 1352 aa16.35■□□□□ 0.21
LINC00339-205ENST00000452322 KIF20BQ96Q89 1820 aa16.34■□□□□ 0.21
LINC00339-205ENST00000452322 CRYBG1Q9Y4K1 1723 aa16.34■□□□□ 0.21
LINC00339-205ENST00000452322 NLRP13Q86W25 1043 aa16.34■□□□□ 0.21
LINC00339-205ENST00000452322 NME9Q86XW9 330 aa16.34■□□□□ 0.21
LINC00339-205ENST00000452322 CGNL1Q0VF96 1302 aa16.34■□□□□ 0.21
LINC00339-205ENST00000452322 ABCA3Q99758 1704 aa16.33■□□□□ 0.21
LINC00339-205ENST00000452322 MARF1Q9Y4F3 1742 aaKnown RBP16.33■□□□□ 0.21
LINC00339-205ENST00000452322 PER1O15534 1290 aaPredicted RBP16.33■□□□□ 0.2
LINC00339-205ENST00000452322 NLRP6P59044 892 aa16.33■□□□□ 0.2
LINC00339-205ENST00000452322 KNSTRNQ9Y448 316 aa16.33■□□□□ 0.2
LINC00339-205ENST00000452322 USP19O94966 1318 aa16.33■□□□□ 0.2
LINC00339-205ENST00000452322 OVOS2A0A0J9YW53 1432 aa16.33■□□□□ 0.2
LINC00339-205ENST00000452322 OVOS2Q6IE36 1432 aa16.33■□□□□ 0.2
LINC00339-205ENST00000452322 PHRF1Q9P1Y6 1649 aaKnown RBP16.33■□□□□ 0.2
LINC00339-205ENST00000452322 FYB1O15117 783 aa16.32■□□□□ 0.2
LINC00339-205ENST00000452322 NUTM2GQ5VZR2 741 aa16.32■□□□□ 0.2
LINC00339-205ENST00000452322 SLIT3O75094 1523 aa16.32■□□□□ 0.2
LINC00339-205ENST00000452322 NSD2O96028 1365 aa16.31■□□□□ 0.2
LINC00339-205ENST00000452322 DDX10Q13206 875 aaKnown RBP16.3■□□□□ 0.2
LINC00339-205ENST00000452322 ANKRD26Q9UPS8 1709 aa16.3■□□□□ 0.2
LINC00339-205ENST00000452322 CABLES1Q8TDN4 633 aa16.29■□□□□ 0.2
LINC00339-205ENST00000452322 COG3Q96JB2 828 aa16.29■□□□□ 0.2
LINC00339-205ENST00000452322 GGNBP2Q9H3C7 697 aa16.29■□□□□ 0.2
LINC00339-205ENST00000452322 ZRANB1Q9UGI0 708 aa16.29■□□□□ 0.2
LINC00339-205ENST00000452322 NPC1L1Q9UHC9 1359 aa16.29■□□□□ 0.2
LINC00339-205ENST00000452322 AMER1Q5JTC6 1135 aaPredicted RBP16.28■□□□□ 0.2
LINC00339-205ENST00000452322 LRP6O75581 1613 aa16.28■□□□□ 0.2
LINC00339-205ENST00000452322 HAP1P54257 671 aaPredicted RBP16.27■□□□□ 0.2
LINC00339-205ENST00000452322 POTEDQ86YR6 584 aa16.27■□□□□ 0.2
LINC00339-205ENST00000452322 KCNH5Q8NCM2 988 aa16.27■□□□□ 0.2
LINC00339-205ENST00000452322 NUTM2BA6NNL0 878 aaPredicted RBP16.26■□□□□ 0.19
LINC00339-205ENST00000452322 NUTM2EB1AL46 878 aaPredicted RBP16.26■□□□□ 0.19
LINC00339-205ENST00000452322 PLEKHG5O94827 1062 aa16.26■□□□□ 0.19
LINC00339-205ENST00000452322 GCP02774 474 aa16.26■□□□□ 0.19
LINC00339-205ENST00000452322 NUTM2AQ8IVF1 878 aaPredicted RBP16.26■□□□□ 0.19
LINC00339-205ENST00000452322 NFAT5O94916 1531 aa16.26■□□□□ 0.19
LINC00339-205ENST00000452322 CPDO75976 1380 aa16.24■□□□□ 0.19
LINC00339-205ENST00000452322 ADAMTS2O95450 1211 aa16.22■□□□□ 0.19
LINC00339-205ENST00000452322 CC2D1BQ5T0F9 858 aaKnown RBP16.22■□□□□ 0.19
LINC00339-205ENST00000452322 KIAA0232Q92628 1395 aa16.22■□□□□ 0.19
LINC00339-205ENST00000452322 SOX12O15370 315 aa16.21■□□□□ 0.19
LINC00339-205ENST00000452322 ZC3H6P61129 1189 aaKnown RBP16.21■□□□□ 0.19
LINC00339-205ENST00000452322 MORC1Q86VD1 984 aa16.21■□□□□ 0.19
LINC00339-205ENST00000452322 AATKQ6ZMQ8 1374 aa16.21■□□□□ 0.19
LINC00339-205ENST00000452322 MEX3CQ5U5Q3 659 aaKnown RBP16.2■□□□□ 0.18
LINC00339-205ENST00000452322 ARHGEF25Q86VW2 580 aa16.2■□□□□ 0.18
LINC00339-205ENST00000452322 COL14A1Q05707 1796 aaKnown RBP16.2■□□□□ 0.18
LINC00339-205ENST00000452322 ABCC6O95255 1503 aa16.2■□□□□ 0.18
LINC00339-205ENST00000452322 LTN1O94822 1766 aa16.19■□□□□ 0.18
LINC00339-205ENST00000452322 PRDM11Q9NQV5 511 aa16.19■□□□□ 0.18
LINC00339-205ENST00000452322 PLCH1Q4KWH8 1693 aa16.18■□□□□ 0.18
LINC00339-205ENST00000452322 LMO7Q8WWI1 1683 aa16.18■□□□□ 0.18
LINC00339-205ENST00000452322 FAM83GA6ND36 823 aa16.17■□□□□ 0.18
LINC00339-205ENST00000452322 C8orf37Q96NL8 207 aa16.17■□□□□ 0.18
LINC00339-205ENST00000452322 MAP3K19Q56UN5 1328 aa16.17■□□□□ 0.18
LINC00339-205ENST00000452322 COL18A1P39060 1754 aa16.17■□□□□ 0.18
LINC00339-205ENST00000452322 KIF24Q5T7B8 1368 aa16.16■□□□□ 0.18
LINC00339-205ENST00000452322 SLIT2O94813 1529 aa16.16■□□□□ 0.18
LINC00339-205ENST00000452322 FBLN1P23142 703 aa16.16■□□□□ 0.18
LINC00339-205ENST00000452322 NWD2Q9ULI1 1742 aa16.16■□□□□ 0.18
LINC00339-205ENST00000452322 RTL1A6NKG5 1358 aa16.16■□□□□ 0.18
LINC00339-205ENST00000452322 PARD3Q8TEW0 1356 aa16.16■□□□□ 0.18
LINC00339-205ENST00000452322 SMG6Q86US8 1419 aaKnown RBP16.15■□□□□ 0.18
LINC00339-205ENST00000452322 TNNT2P45379 298 aaPredicted RBP16.15■□□□□ 0.18
LINC00339-205ENST00000452322 CNGB1Q14028 1251 aaPredicted RBP16.15■□□□□ 0.18
LINC00339-205ENST00000452322 RRS1Q15050 365 aaKnown RBP16.15■□□□□ 0.18
LINC00339-205ENST00000452322 CHRNA2Q15822 529 aa16.15■□□□□ 0.18
LINC00339-205ENST00000452322 FNBP4Q8N3X1 1017 aaPredicted RBP16.15■□□□□ 0.18
LINC00339-205ENST00000452322 NGLY1Q96IV0 654 aa16.15■□□□□ 0.18
LINC00339-205ENST00000452322 MAP2P11137 1827 aaKnown RBP16.15■□□□□ 0.18
LINC00339-205ENST00000452322 ZBTB7CA1YPR0 619 aa16.14■□□□□ 0.17
LINC00339-205ENST00000452322 CAMTA1Q9Y6Y1 1673 aa16.14■□□□□ 0.17
LINC00339-205ENST00000452322 POLKQ9UBT6 870 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms