RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 HDGFL2Q7Z4V5 671 aaPredicted RBP16.01■□□□□ 0.15
SCN9A-204ENST00000452182 PXDNQ92626 1479 aa16■□□□□ 0.15
SCN9A-204ENST00000452182 NRKQ7Z2Y5 1582 aa15.99■□□□□ 0.15
SCN9A-204ENST00000452182 USP6P35125 1406 aa15.99■□□□□ 0.15
SCN9A-204ENST00000452182 SOS2Q07890 1332 aaPredicted RBP15.99■□□□□ 0.15
SCN9A-204ENST00000452182 PSME1Q06323 249 aa15.99■□□□□ 0.15
SCN9A-204ENST00000452182 SSH2Q76I76 1423 aa15.99■□□□□ 0.15
SCN9A-204ENST00000452182 KTN1Q86UP2 1357 aaKnown RBP15.98■□□□□ 0.15
SCN9A-204ENST00000452182 TRPM3Q9HCF6 1732 aaPredicted RBP15.98■□□□□ 0.15
SCN9A-204ENST00000452182 PHLPP1O60346 1717 aa15.98■□□□□ 0.15
SCN9A-204ENST00000452182 EDC4Q6P2E9 1401 aaKnown RBP15.97■□□□□ 0.15
SCN9A-204ENST00000452182 KRT28Q7Z3Y7 464 aa15.97■□□□□ 0.15
SCN9A-204ENST00000452182 PANK3Q9H999 370 aa15.97■□□□□ 0.15
SCN9A-204ENST00000452182 SBNO1A3KN83 1393 aa15.96■□□□□ 0.15
SCN9A-204ENST00000452182 FBXO41Q8TF61 875 aa15.96■□□□□ 0.15
SCN9A-204ENST00000452182 COL16A1Q07092 1604 aaPredicted RBP15.96■□□□□ 0.14
SCN9A-204ENST00000452182 DDX17Q92841 729 aaKnown RBP15.95■□□□□ 0.14
SCN9A-204ENST00000452182 CARD14Q9BXL6 1004 aa15.94■□□□□ 0.14
SCN9A-204ENST00000452182 ALS2Q96Q42 1657 aa15.94■□□□□ 0.14
SCN9A-204ENST00000452182 TTC21AQ8NDW8 1320 aa15.94■□□□□ 0.14
SCN9A-204ENST00000452182 DCAF8L1A6NGE4 600 aa15.94■□□□□ 0.14
SCN9A-204ENST00000452182 TTC21BQ7Z4L5 1316 aa15.93■□□□□ 0.14
SCN9A-204ENST00000452182 PER1O15534 1290 aaPredicted RBP15.93■□□□□ 0.14
SCN9A-204ENST00000452182 XPCQ01831 940 aaPredicted RBP15.93■□□□□ 0.14
SCN9A-204ENST00000452182 SPATA31A3Q5VYP0 1347 aa15.92■□□□□ 0.14
SCN9A-204ENST00000452182 TNS3Q68CZ2 1445 aa15.92■□□□□ 0.14
SCN9A-204ENST00000452182 NSD3Q9BZ95 1437 aa15.92■□□□□ 0.14
SCN9A-204ENST00000452182 LRRC59Q96AG4 307 aaKnown RBP15.92■□□□□ 0.14
SCN9A-204ENST00000452182 ATXN8OSP0DMR3 200 aa15.91■□□□□ 0.14
SCN9A-204ENST00000452182 DDX10Q13206 875 aaKnown RBP15.91■□□□□ 0.14
SCN9A-204ENST00000452182 PIK3C2AO00443 1686 aa15.9■□□□□ 0.14
SCN9A-204ENST00000452182 USP54Q70EL1 1684 aa15.9■□□□□ 0.14
SCN9A-204ENST00000452182 ARHGEF10O15013 1369 aa15.9■□□□□ 0.14
SCN9A-204ENST00000452182 KIF20BQ96Q89 1820 aa15.9■□□□□ 0.14
SCN9A-204ENST00000452182 CGNL1Q0VF96 1302 aa15.89■□□□□ 0.13
SCN9A-204ENST00000452182 PAK3O75914 559 aaPredicted RBP15.89■□□□□ 0.13
SCN9A-204ENST00000452182 KNSTRNQ9Y448 316 aa15.89■□□□□ 0.13
SCN9A-204ENST00000452182 COL22A1Q8NFW1 1626 aaPredicted RBP15.88■□□□□ 0.13
SCN9A-204ENST00000452182 USP31Q70CQ4 1352 aa15.88■□□□□ 0.13
SCN9A-204ENST00000452182 NPC1L1Q9UHC9 1359 aa15.88■□□□□ 0.13
SCN9A-204ENST00000452182 HSPA1LP34931 641 aa15.88■□□□□ 0.13
SCN9A-204ENST00000452182 NSD2O96028 1365 aa15.88■□□□□ 0.13
SCN9A-204ENST00000452182 SHPRHQ149N8 1683 aa15.87■□□□□ 0.13
SCN9A-204ENST00000452182 FYB1O15117 783 aa15.87■□□□□ 0.13
SCN9A-204ENST00000452182 MED1Q15648 1581 aaPredicted RBP15.87■□□□□ 0.13
SCN9A-204ENST00000452182 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.87■□□□□ 0.13
SCN9A-204ENST00000452182 ABTB2Q8N961 1025 aa15.87■□□□□ 0.13
SCN9A-204ENST00000452182 ANKRD26Q9UPS8 1709 aa15.87■□□□□ 0.13
SCN9A-204ENST00000452182 MARF1Q9Y4F3 1742 aaKnown RBP15.87■□□□□ 0.13
SCN9A-204ENST00000452182 AMER1Q5JTC6 1135 aaPredicted RBP15.86■□□□□ 0.13
SCN9A-204ENST00000452182 NME9Q86XW9 330 aa15.86■□□□□ 0.13
SCN9A-204ENST00000452182 PNPLA6Q8IY17 1366 aa15.85■□□□□ 0.13
SCN9A-204ENST00000452182 JCADQ9P266 1359 aa15.85■□□□□ 0.13
SCN9A-204ENST00000452182 OVOS2A0A0J9YW53 1432 aa15.85■□□□□ 0.13
SCN9A-204ENST00000452182 OVOS2Q6IE36 1432 aa15.85■□□□□ 0.13
SCN9A-204ENST00000452182 CRYBG1Q9Y4K1 1723 aa15.85■□□□□ 0.13
SCN9A-204ENST00000452182 NLRP13Q86W25 1043 aa15.85■□□□□ 0.13
SCN9A-204ENST00000452182 NLRP6P59044 892 aa15.83■□□□□ 0.13
SCN9A-204ENST00000452182 LMOD2Q6P5Q4 547 aa15.83■□□□□ 0.13
SCN9A-204ENST00000452182 USP19O94966 1318 aa15.83■□□□□ 0.13
SCN9A-204ENST00000452182 SLIT3O75094 1523 aa15.83■□□□□ 0.12
SCN9A-204ENST00000452182 PHRF1Q9P1Y6 1649 aaKnown RBP15.82■□□□□ 0.12
SCN9A-204ENST00000452182 ABCA3Q99758 1704 aa15.82■□□□□ 0.12
SCN9A-204ENST00000452182 COG3Q96JB2 828 aa15.82■□□□□ 0.12
SCN9A-204ENST00000452182 GGNBP2Q9H3C7 697 aa15.82■□□□□ 0.12
SCN9A-204ENST00000452182 NUTM2GQ5VZR2 741 aa15.8■□□□□ 0.12
SCN9A-204ENST00000452182 ZRANB1Q9UGI0 708 aa15.8■□□□□ 0.12
SCN9A-204ENST00000452182 SPATA31A6Q5VVP1 1343 aa15.79■□□□□ 0.12
SCN9A-204ENST00000452182 KCNH5Q8NCM2 988 aa15.79■□□□□ 0.12
SCN9A-204ENST00000452182 GCP02774 474 aa15.78■□□□□ 0.12
SCN9A-204ENST00000452182 NFAT5O94916 1531 aa15.78■□□□□ 0.12
SCN9A-204ENST00000452182 CC2D1BQ5T0F9 858 aaKnown RBP15.77■□□□□ 0.12
SCN9A-204ENST00000452182 AATKQ6ZMQ8 1374 aa15.77■□□□□ 0.11
SCN9A-204ENST00000452182 MORC1Q86VD1 984 aa15.76■□□□□ 0.11
SCN9A-204ENST00000452182 CABLES1Q8TDN4 633 aa15.76■□□□□ 0.11
SCN9A-204ENST00000452182 PARD3Q8TEW0 1356 aa15.76■□□□□ 0.11
SCN9A-204ENST00000452182 CPDO75976 1380 aa15.75■□□□□ 0.11
SCN9A-204ENST00000452182 MAP2P11137 1827 aaKnown RBP15.73■□□□□ 0.11
SCN9A-204ENST00000452182 HAP1P54257 671 aaPredicted RBP15.73■□□□□ 0.11
SCN9A-204ENST00000452182 RALBP1Q15311 655 aa15.73■□□□□ 0.11
SCN9A-204ENST00000452182 LTN1O94822 1766 aa15.73■□□□□ 0.11
SCN9A-204ENST00000452182 ILDR1Q86SU0 546 aaPredicted RBP15.72■□□□□ 0.11
SCN9A-204ENST00000452182 ABCC6O95255 1503 aa15.72■□□□□ 0.11
SCN9A-204ENST00000452182 ARHGEF25Q86VW2 580 aa15.72■□□□□ 0.11
SCN9A-204ENST00000452182 PRKRIP1Q9H875 184 aaPredicted RBP15.72■□□□□ 0.11
SCN9A-204ENST00000452182 KIF24Q5T7B8 1368 aa15.72■□□□□ 0.11
SCN9A-204ENST00000452182 LRP6O75581 1613 aa15.71■□□□□ 0.11
SCN9A-204ENST00000452182 SMG6Q86US8 1419 aaKnown RBP15.7■□□□□ 0.1
SCN9A-204ENST00000452182 KIAA0232Q92628 1395 aa15.7■□□□□ 0.1
SCN9A-204ENST00000452182 PLEKHG5O94827 1062 aa15.7■□□□□ 0.1
SCN9A-204ENST00000452182 COL14A1Q05707 1796 aaKnown RBP15.7■□□□□ 0.1
SCN9A-204ENST00000452182 NUTM2BA6NNL0 878 aaPredicted RBP15.69■□□□□ 0.1
SCN9A-204ENST00000452182 NUTM2EB1AL46 878 aaPredicted RBP15.69■□□□□ 0.1
SCN9A-204ENST00000452182 SOX12O15370 315 aa15.69■□□□□ 0.1
SCN9A-204ENST00000452182 ZC3H6P61129 1189 aaKnown RBP15.69■□□□□ 0.1
SCN9A-204ENST00000452182 DIEXFQ68CQ4 756 aaKnown RBP15.69■□□□□ 0.1
SCN9A-204ENST00000452182 NUTM2AQ8IVF1 878 aaPredicted RBP15.69■□□□□ 0.1
SCN9A-204ENST00000452182 COL18A1P39060 1754 aa15.69■□□□□ 0.1
SCN9A-204ENST00000452182 MAP3K19Q56UN5 1328 aa15.69■□□□□ 0.1
SCN9A-204ENST00000452182 RTL1A6NKG5 1358 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms