RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	CDK19	Q9BWU1	502 aa		21.79	■■□□□ 1.08
TOM1-210	ENST00000449058	CT47B1	P0C2W7	299 aa	Predicted RBP	21.79	■■□□□ 1.08
TOM1-210	ENST00000449058	PNPLA6	Q8IY17	1366 aa		21.78	■■□□□ 1.08
TOM1-210	ENST00000449058	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	21.78	■■□□□ 1.08
TOM1-210	ENST00000449058	MAPK8IP3	Q9UPT6	1336 aa		21.78	■■□□□ 1.08
TOM1-210	ENST00000449058	TMPO	P42166	694 aa	Known RBP	21.77	■■□□□ 1.08
TOM1-210	ENST00000449058	PPM1G	O15355	546 aa	Predicted RBP	21.77	■■□□□ 1.08
TOM1-210	ENST00000449058	PRKCSH	P14314	528 aa	Predicted RBP	21.77	■■□□□ 1.08
TOM1-210	ENST00000449058	TNN	Q9UQP3	1299 aa		21.77	■■□□□ 1.08
TOM1-210	ENST00000449058	LAS1L	Q9Y4W2	734 aa	Known RBP	21.77	■■□□□ 1.08
TOM1-210	ENST00000449058	CDC42BPG	Q6DT37	1551 aa		21.76	■■□□□ 1.07
TOM1-210	ENST00000449058	U2SURP	O15042	1029 aa	Known RBP	21.76	■■□□□ 1.07
TOM1-210	ENST00000449058	PMFBP1	Q8TBY8	1022 aa		21.76	■■□□□ 1.07
TOM1-210	ENST00000449058	BCL2L13	Q9BXK5	485 aa		21.76	■■□□□ 1.07
TOM1-210	ENST00000449058	USP35	Q9P2H5	1018 aa		21.76	■■□□□ 1.07
TOM1-210	ENST00000449058	STAG3	Q9UJ98	1225 aa		21.76	■■□□□ 1.07
TOM1-210	ENST00000449058	TRIM35	Q9UPQ4	493 aa		21.76	■■□□□ 1.07
TOM1-210	ENST00000449058	PCDHB15	Q9Y5E8	787 aa		21.75	■■□□□ 1.07
TOM1-210	ENST00000449058	ATP7B	P35670	1465 aa		21.75	■■□□□ 1.07
TOM1-210	ENST00000449058	CABP1	Q9NZU7	370 aa		21.74	■■□□□ 1.07
TOM1-210	ENST00000449058	IL16	Q14005	1332 aa		21.74	■■□□□ 1.07
TOM1-210	ENST00000449058	RIMS2	Q9UQ26	1411 aa		21.74	■■□□□ 1.07
TOM1-210	ENST00000449058	DIAPH1	O60610	1272 aa	Known RBP	21.72	■■□□□ 1.07
TOM1-210	ENST00000449058	TSR2	Q969E8	191 aa	Known RBP	21.72	■■□□□ 1.07
TOM1-210	ENST00000449058	ZMYM3	Q14202	1370 aa		21.72	■■□□□ 1.07
TOM1-210	ENST00000449058	ZKSCAN2	Q63HK3	967 aa		21.71	■■□□□ 1.07
TOM1-210	ENST00000449058	NRXN3	Q9Y4C0	1643 aa		21.71	■■□□□ 1.07
TOM1-210	ENST00000449058	NEFM	P07197	916 aa		21.7	■■□□□ 1.07
TOM1-210	ENST00000449058	MVP	Q14764	893 aa	Known RBP	21.7	■■□□□ 1.07
TOM1-210	ENST00000449058	EXOSC9	Q06265	439 aa	Known RBP	21.69	■■□□□ 1.06
TOM1-210	ENST00000449058	PNN	Q9H307	717 aa	Known RBP	21.69	■■□□□ 1.06
TOM1-210	ENST00000449058	LRRC7	Q96NW7	1537 aa		21.68	■■□□□ 1.06
TOM1-210	ENST00000449058	USP19	O94966	1318 aa		21.68	■■□□□ 1.06
TOM1-210	ENST00000449058	WAPL	Q7Z5K2	1190 aa		21.68	■■□□□ 1.06
TOM1-210	ENST00000449058	DZIP1L	Q8IYY4	767 aa	Known RBP	21.67	■■□□□ 1.06
TOM1-210	ENST00000449058	RWDD1	Q9H446	243 aa	Predicted RBP	21.67	■■□□□ 1.06
TOM1-210	ENST00000449058	MAP2	P11137	1827 aa	Known RBP	21.67	■■□□□ 1.06
TOM1-210	ENST00000449058	SLC4A3	P48751	1232 aa		21.66	■■□□□ 1.06
TOM1-210	ENST00000449058	RIPK4	P57078	832 aa		21.66	■■□□□ 1.06
TOM1-210	ENST00000449058	FCHSD2	O94868	740 aa		21.66	■■□□□ 1.06
TOM1-210	ENST00000449058	DAXX	Q9UER7	740 aa	Predicted RBP	21.66	■■□□□ 1.06
TOM1-210	ENST00000449058	SMC4	Q9NTJ3	1288 aa		21.65	■■□□□ 1.06
TOM1-210	ENST00000449058	CPSF1	Q10570	1443 aa	Known RBP	21.65	■■□□□ 1.06
TOM1-210	ENST00000449058	FAM135B	Q49AJ0	1406 aa		21.65	■■□□□ 1.06
TOM1-210	ENST00000449058	SSH1	Q8WYL5	1049 aa		21.65	■■□□□ 1.06
TOM1-210	ENST00000449058	KNDC1	Q76NI1	1749 aa		21.64	■■□□□ 1.05
TOM1-210	ENST00000449058	FTSJ3	Q8IY81	847 aa	Known RBP	21.64	■■□□□ 1.05
TOM1-210	ENST00000449058	POLK	Q9UBT6	870 aa		21.64	■■□□□ 1.05
TOM1-210	ENST00000449058	PDZRN3	Q9UPQ7	1066 aa		21.64	■■□□□ 1.05
TOM1-210	ENST00000449058	TRIM27	P14373	513 aa		21.63	■■□□□ 1.05
TOM1-210	ENST00000449058	EDC4	Q6P2E9	1401 aa	Known RBP	21.62	■■□□□ 1.05
TOM1-210	ENST00000449058	RSPH6A	Q9H0K4	717 aa		21.62	■■□□□ 1.05
TOM1-210	ENST00000449058	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	21.62	■■□□□ 1.05
TOM1-210	ENST00000449058	SEC24B	O95487	1268 aa		21.61	■■□□□ 1.05
TOM1-210	ENST00000449058	ATF7IP	Q6VMQ6	1270 aa		21.61	■■□□□ 1.05
TOM1-210	ENST00000449058	MON2	Q7Z3U7	1717 aa		21.6	■■□□□ 1.05
TOM1-210	ENST00000449058	MET	P08581	1390 aa		21.6	■■□□□ 1.05
TOM1-210	ENST00000449058	WASL	O00401	505 aa	Predicted RBP	21.6	■■□□□ 1.05
TOM1-210	ENST00000449058	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	21.6	■■□□□ 1.05
TOM1-210	ENST00000449058	PPIP5K1	Q6PFW1	1433 aa		21.6	■■□□□ 1.05
TOM1-210	ENST00000449058	DDX19B	Q9UMR2	479 aa		21.59	■■□□□ 1.05
TOM1-210	ENST00000449058	TECPR2	O15040	1411 aa		21.58	■■□□□ 1.05
TOM1-210	ENST00000449058	PRKAR2B	P31323	418 aa		21.58	■■□□□ 1.05
TOM1-210	ENST00000449058	MLEC	Q14165	292 aa		21.58	■■□□□ 1.05
TOM1-210	ENST00000449058	CDK12	Q9NYV4	1490 aa	Predicted RBP	21.58	■■□□□ 1.04
TOM1-210	ENST00000449058	HDAC1	Q13547	482 aa	Predicted RBP	21.58	■■□□□ 1.04
TOM1-210	ENST00000449058	NOB1	Q9ULX3	412 aa	Known RBP	21.58	■■□□□ 1.04
TOM1-210	ENST00000449058	FBLN1	P23142	703 aa		21.57	■■□□□ 1.04
TOM1-210	ENST00000449058	AKAP12	Q02952	1782 aa		21.57	■■□□□ 1.04
TOM1-210	ENST00000449058	KIF16B	Q96L93	1317 aa		21.57	■■□□□ 1.04
TOM1-210	ENST00000449058	CPS1	P31327	1500 aa		21.57	■■□□□ 1.04
TOM1-210	ENST00000449058	NFKBIB	Q15653	356 aa		21.56	■■□□□ 1.04
TOM1-210	ENST00000449058	ALDH1L2	Q3SY69	923 aa		21.56	■■□□□ 1.04
TOM1-210	ENST00000449058	SIRT1	Q96EB6	747 aa		21.56	■■□□□ 1.04
TOM1-210	ENST00000449058	AATK	Q6ZMQ8	1374 aa		21.56	■■□□□ 1.04
TOM1-210	ENST00000449058	KIF13A	Q9H1H9	1805 aa		21.56	■■□□□ 1.04
TOM1-210	ENST00000449058	ITPRIP	Q8IWB1	547 aa		21.54	■■□□□ 1.04
TOM1-210	ENST00000449058	C3	P01024	1663 aa		21.54	■■□□□ 1.04
TOM1-210	ENST00000449058	IPO8	O15397	1037 aa	Known RBP	21.54	■■□□□ 1.04
TOM1-210	ENST00000449058	ITSN1	Q15811	1721 aa		21.54	■■□□□ 1.04
TOM1-210	ENST00000449058	NFE2L2	Q16236	605 aa		21.54	■■□□□ 1.04
TOM1-210	ENST00000449058	IL13	P35225	146 aa		21.53	■■□□□ 1.04
TOM1-210	ENST00000449058	BRPF1	P55201	1214 aa	Predicted RBP	21.53	■■□□□ 1.04
TOM1-210	ENST00000449058	ZNF428	Q96B54	188 aa		21.53	■■□□□ 1.04
TOM1-210	ENST00000449058	NME9	Q86XW9	330 aa		21.53	■■□□□ 1.04
TOM1-210	ENST00000449058	TMEM57	Q8N5G2	664 aa		21.53	■■□□□ 1.04
TOM1-210	ENST00000449058	EMILIN1	Q9Y6C2	1016 aa		21.53	■■□□□ 1.04
TOM1-210	ENST00000449058	TXNDC2	Q86VQ3	553 aa		21.52	■■□□□ 1.04
TOM1-210	ENST00000449058	NUDT16	Q96DE0	195 aa	Known RBP	21.52	■■□□□ 1.04
TOM1-210	ENST00000449058	PHACTR3	Q96KR7	559 aa		21.52	■■□□□ 1.04
TOM1-210	ENST00000449058	ZBTB40	Q9NUA8	1239 aa		21.52	■■□□□ 1.04
TOM1-210	ENST00000449058	UBR1	Q8IWV7	1749 aa		21.51	■■□□□ 1.03
TOM1-210	ENST00000449058	DLG5	Q8TDM6	1919 aa		21.5	■■□□□ 1.03
TOM1-210	ENST00000449058	CCDC61	Q9Y6R9	512 aa		21.5	■■□□□ 1.03
TOM1-210	ENST00000449058	HMOX1	P09601	288 aa		21.5	■■□□□ 1.03
TOM1-210	ENST00000449058	SMC5	Q8IY18	1101 aa		21.5	■■□□□ 1.03
TOM1-210	ENST00000449058	TBC1D32	Q96NH3	1257 aa		21.5	■■□□□ 1.03
TOM1-210	ENST00000449058	HDGF	P51858	240 aa	Known RBP	21.49	■■□□□ 1.03
TOM1-210	ENST00000449058	CALD1	Q05682	793 aa	Known RBP	21.49	■■□□□ 1.03
TOM1-210	ENST00000449058	ZRANB1	Q9UGI0	708 aa		21.49	■■□□□ 1.03

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms