RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 G3BP1Q13283 466 aaKnown RBP eCLIP9.16□□□□□ -0.94
SYNE1-213ENST00000448038 NSD2O96028 1365 aa9.16□□□□□ -0.94
SYNE1-213ENST00000448038 BCAR3O75815 825 aa9.16□□□□□ -0.94
SYNE1-213ENST00000448038 AAMPQ13685 434 aa9.16□□□□□ -0.94
SYNE1-213ENST00000448038 WWC1Q8IX03 1113 aa9.16□□□□□ -0.94
SYNE1-213ENST00000448038 ARHGEF5Q12774 1597 aa9.16□□□□□ -0.94
SYNE1-213ENST00000448038 SLC4A2P04920 1241 aa9.16□□□□□ -0.94
SYNE1-213ENST00000448038 ERCC6L2Q5T890 1561 aa9.15□□□□□ -0.94
SYNE1-213ENST00000448038 IFIT2P09913 472 aaKnown RBP9.15□□□□□ -0.94
SYNE1-213ENST00000448038 LRPPRCP42704 1394 aaKnown RBP9.15□□□□□ -0.94
SYNE1-213ENST00000448038 EIF2AK4Q9P2K8 1649 aaKnown RBP9.15□□□□□ -0.94
SYNE1-213ENST00000448038 MBD5Q9P267 1494 aa9.15□□□□□ -0.94
SYNE1-213ENST00000448038 HSPA2P54652 639 aa9.15□□□□□ -0.94
SYNE1-213ENST00000448038 FAM161AQ3B820 660 aa9.15□□□□□ -0.94
SYNE1-213ENST00000448038 NOB1Q9ULX3 412 aaKnown RBP9.15□□□□□ -0.94
SYNE1-213ENST00000448038 CFAP74Q9C0B2 1584 aa9.15□□□□□ -0.94
SYNE1-213ENST00000448038 ZCCHC11Q5TAX3 1644 aaKnown RBP9.15□□□□□ -0.94
SYNE1-213ENST00000448038 GNAT3A8MTJ3 354 aa9.15□□□□□ -0.94
SYNE1-213ENST00000448038 GOLGA6L4A6NEF3 574 aa9.15□□□□□ -0.95
SYNE1-213ENST00000448038 CT47B1P0C2W7 299 aaPredicted RBP9.15□□□□□ -0.95
SYNE1-213ENST00000448038 ZFYVE16Q7Z3T8 1539 aa9.15□□□□□ -0.95
SYNE1-213ENST00000448038 ARHGEF12Q9NZN5 1544 aa9.15□□□□□ -0.95
SYNE1-213ENST00000448038 USHBP1Q8N6Y0 703 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 PDE4AP27815 886 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 HSP90AB4PQ58FF6 505 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 LNPKQ9C0E8 428 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 YEATS2Q9ULM3 1422 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 MSH6P52701 1360 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 GNAI3P08754 354 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 THUMPD2Q9BTF0 503 aaKnown RBP9.14□□□□□ -0.95
SYNE1-213ENST00000448038 SLKQ9H2G2 1235 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-213ENST00000448038 TSHZ2Q9NRE2 1034 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 CFAP65Q6ZU64 1925 aaKnown RBP9.14□□□□□ -0.95
SYNE1-213ENST00000448038 NCKAP5LQ9HCH0 1330 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 BTBD11A6QL63 1104 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 PDE3AQ14432 1141 aa9.14□□□□□ -0.95
SYNE1-213ENST00000448038 ADGBQ8N7X0 1667 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 TTC37Q6PGP7 1564 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 TESK2Q96S53 571 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 SAMD9LQ8IVG5 1584 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 ANKRD36BQ8N2N9 1353 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 PPIP5K1Q6PFW1 1433 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 MCM10Q7L590 875 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 SLFN5Q08AF3 891 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 DIAPH3Q9NSV4 1193 aa9.13□□□□□ -0.95
SYNE1-213ENST00000448038 ADAMTS2O95450 1211 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 GNL2Q13823 731 aaKnown RBP9.12□□□□□ -0.95
SYNE1-213ENST00000448038 DCTN1Q14203 1278 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 KIF6Q6ZMV9 814 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 FYB1O15117 783 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 NOL8Q76FK4 1167 aaKnown RBP9.12□□□□□ -0.95
SYNE1-213ENST00000448038 TBX22Q9Y458 520 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 HSP90B1P14625 803 aaKnown RBP9.12□□□□□ -0.95
SYNE1-213ENST00000448038 FBLN1P23142 703 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 TOMM22Q9NS69 142 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 TTC21BQ7Z4L5 1316 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 KCNA6P17658 529 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 MIS18AQ9NYP9 233 aa9.12□□□□□ -0.95
SYNE1-213ENST00000448038 YTHDC2Q9H6S0 1430 aaKnown RBP9.11□□□□□ -0.95
SYNE1-213ENST00000448038 ATF7IPQ6VMQ6 1270 aa9.11□□□□□ -0.95
SYNE1-213ENST00000448038 TTC21AQ8NDW8 1320 aa9.11□□□□□ -0.95
SYNE1-213ENST00000448038 FAM177BA6PVY3 158 aa9.11□□□□□ -0.95
SYNE1-213ENST00000448038 LRRFIP1Q32MZ4 808 aaKnown RBP9.11□□□□□ -0.95
SYNE1-213ENST00000448038 AMOTQ4VCS5 1084 aa9.11□□□□□ -0.95
SYNE1-213ENST00000448038 MYL6BP14649 208 aa9.11□□□□□ -0.95
SYNE1-213ENST00000448038 AMER1Q5JTC6 1135 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-213ENST00000448038 GCC2Q8IWJ2 1684 aa9.11□□□□□ -0.95
SYNE1-213ENST00000448038 ST18O60284 1047 aa9.11□□□□□ -0.95
SYNE1-213ENST00000448038 RUFY2Q8WXA3 655 aa9.11□□□□□ -0.95
SYNE1-213ENST00000448038 TSPOAP1O95153 1857 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 VPS37DQ86XT2 251 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 TRIM44Q96DX7 344 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-213ENST00000448038 PUS7Q96PZ0 661 aaKnown RBP9.1□□□□□ -0.95
SYNE1-213ENST00000448038 PHF23Q9BUL5 403 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-213ENST00000448038 C1orf115Q9H7X2 142 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 ABCC1P33527 1531 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 ASXL1Q8IXJ9 1541 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 SURF6O75683 361 aaKnown RBP9.1□□□□□ -0.95
SYNE1-213ENST00000448038 CCT4P50991 539 aaKnown RBP9.1□□□□□ -0.95
SYNE1-213ENST00000448038 ZNF428Q96B54 188 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 NEUROD6Q96NK8 337 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 NPATQ14207 1427 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 PREX2Q70Z35 1606 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 GNAI2P04899 355 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 C19orf44Q9H6X5 657 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 ABCC11Q96J66 1382 aa9.1□□□□□ -0.95
SYNE1-213ENST00000448038 NPHP3Q7Z494 1330 aa9.09□□□□□ -0.95
SYNE1-213ENST00000448038 IPO9Q96P70 1041 aaKnown RBP9.09□□□□□ -0.95
SYNE1-213ENST00000448038 UHRF1BP1Q6BDS2 1440 aa9.09□□□□□ -0.95
SYNE1-213ENST00000448038 IFT57Q9NWB7 429 aa9.09□□□□□ -0.95
SYNE1-213ENST00000448038 SRCIN1Q9C0H9 1055 aa9.09□□□□□ -0.95
SYNE1-213ENST00000448038 ERC2O15083 957 aa9.09□□□□□ -0.95
SYNE1-213ENST00000448038 REC8O95072 547 aa9.09□□□□□ -0.95
SYNE1-213ENST00000448038 DUSP27Q5VZP5 1158 aa9.09□□□□□ -0.95
SYNE1-213ENST00000448038 FOXD4L1Q9NU39 408 aa9.09□□□□□ -0.95
SYNE1-213ENST00000448038 PTMAP06454 111 aaKnown RBP9.08□□□□□ -0.96
SYNE1-213ENST00000448038 PLCB2Q00722 1185 aa9.08□□□□□ -0.96
SYNE1-213ENST00000448038 TAF7Q15545 349 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-213ENST00000448038 CHRNA2Q15822 529 aa9.08□□□□□ -0.96
SYNE1-213ENST00000448038 GBP4Q96PP9 640 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms