RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 ALS2Q96Q42 1657 aa22.97■■□□□ 1.27
SF3A1-204ENST00000447376 MARF1Q9Y4F3 1742 aaKnown RBP22.96■■□□□ 1.27
SF3A1-204ENST00000447376 CABLES1Q8TDN4 633 aa22.96■■□□□ 1.27
SF3A1-204ENST00000447376 ZNF692Q9BU19 519 aaPredicted RBP22.96■■□□□ 1.27
SF3A1-204ENST00000447376 ABTB2Q8N961 1025 aa22.95■■□□□ 1.26
SF3A1-204ENST00000447376 PUS7Q96PZ0 661 aaKnown RBP22.95■■□□□ 1.26
SF3A1-204ENST00000447376 USP21Q9UK80 565 aa22.95■■□□□ 1.26
SF3A1-204ENST00000447376 TMF1P82094 1093 aa22.94■■□□□ 1.26
SF3A1-204ENST00000447376 TMC1Q8TDI8 760 aa22.94■■□□□ 1.26
SF3A1-204ENST00000447376 RXRBP28702 533 aa22.93■■□□□ 1.26
SF3A1-204ENST00000447376 CDCA8Q53HL2 280 aa22.93■■□□□ 1.26
SF3A1-204ENST00000447376 QTRT2Q9H974 415 aaKnown RBP22.93■■□□□ 1.26
SF3A1-204ENST00000447376 USP6P35125 1406 aa22.92■■□□□ 1.26
SF3A1-204ENST00000447376 FNBP4Q8N3X1 1017 aaPredicted RBP22.92■■□□□ 1.26
SF3A1-204ENST00000447376 ABCA3Q99758 1704 aa22.91■■□□□ 1.26
SF3A1-204ENST00000447376 HDGFL2Q7Z4V5 671 aaPredicted RBP22.91■■□□□ 1.26
SF3A1-204ENST00000447376 NLRP13Q86W25 1043 aa22.91■■□□□ 1.26
SF3A1-204ENST00000447376 TESK2Q96S53 571 aa22.91■■□□□ 1.26
SF3A1-204ENST00000447376 TRPC5Q9UL62 973 aaPredicted RBP22.91■■□□□ 1.26
SF3A1-204ENST00000447376 SOCS7O14512 581 aa22.9■■□□□ 1.26
SF3A1-204ENST00000447376 KTN1Q86UP2 1357 aaKnown RBP22.89■■□□□ 1.26
SF3A1-204ENST00000447376 NINLQ9Y2I6 1382 aa22.89■■□□□ 1.26
SF3A1-204ENST00000447376 NUTM2GQ5VZR2 741 aa22.89■■□□□ 1.25
SF3A1-204ENST00000447376 TERF2IPQ9NYB0 399 aa22.89■■□□□ 1.25
SF3A1-204ENST00000447376 RBM6P78332 1123 aaKnown RBP22.87■■□□□ 1.25
SF3A1-204ENST00000447376 TTC21AQ8NDW8 1320 aa22.86■■□□□ 1.25
SF3A1-204ENST00000447376 EIF4G2P78344 907 aaKnown RBP eCLIP22.86■■□□□ 1.25
SF3A1-204ENST00000447376 PRDM11Q9NQV5 511 aa22.86■■□□□ 1.25
SF3A1-204ENST00000447376 AKAP12Q02952 1782 aa22.86■■□□□ 1.25
SF3A1-204ENST00000447376 NLRP6P59044 892 aa22.85■■□□□ 1.25
SF3A1-204ENST00000447376 UNC5CLQ8IV45 518 aa22.85■■□□□ 1.25
SF3A1-204ENST00000447376 CPSF1Q10570 1443 aaKnown RBP22.84■■□□□ 1.25
SF3A1-204ENST00000447376 SLIT2O94813 1529 aa22.83■■□□□ 1.25
SF3A1-204ENST00000447376 PHRF1Q9P1Y6 1649 aaKnown RBP22.83■■□□□ 1.25
SF3A1-204ENST00000447376 SLC12A5Q9H2X9 1139 aa22.83■■□□□ 1.25
SF3A1-204ENST00000447376 TTC21BQ7Z4L5 1316 aa22.82■■□□□ 1.24
SF3A1-204ENST00000447376 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.82■■□□□ 1.24
SF3A1-204ENST00000447376 COL14A1Q05707 1796 aaKnown RBP22.82■■□□□ 1.24
SF3A1-204ENST00000447376 PLCH1Q4KWH8 1693 aa22.82■■□□□ 1.24
SF3A1-204ENST00000447376 BCL9LQ86UU0 1499 aa22.82■■□□□ 1.24
SF3A1-204ENST00000447376 NWD2Q9ULI1 1742 aa22.82■■□□□ 1.24
SF3A1-204ENST00000447376 CRYBG1Q9Y4K1 1723 aa22.82■■□□□ 1.24
SF3A1-204ENST00000447376 CDK12Q9NYV4 1490 aaPredicted RBP22.81■■□□□ 1.24
SF3A1-204ENST00000447376 FAM83GA6ND36 823 aa22.81■■□□□ 1.24
SF3A1-204ENST00000447376 ATRNO75882 1429 aa22.81■■□□□ 1.24
SF3A1-204ENST00000447376 CCDC9Q9Y3X0 531 aaKnown RBP22.8■■□□□ 1.24
SF3A1-204ENST00000447376 USP19O94966 1318 aa22.8■■□□□ 1.24
SF3A1-204ENST00000447376 MON2Q7Z3U7 1717 aa22.79■■□□□ 1.24
SF3A1-204ENST00000447376 ZC3H6P61129 1189 aaKnown RBP22.79■■□□□ 1.24
SF3A1-204ENST00000447376 BTG4Q9NY30 223 aa22.79■■□□□ 1.24
SF3A1-204ENST00000447376 SSH2Q76I76 1423 aa22.79■■□□□ 1.24
SF3A1-204ENST00000447376 KIAA0232Q92628 1395 aa22.78■■□□□ 1.24
SF3A1-204ENST00000447376 GCP02774 474 aa22.78■■□□□ 1.24
SF3A1-204ENST00000447376 EDC4Q6P2E9 1401 aaKnown RBP22.78■■□□□ 1.24
SF3A1-204ENST00000447376 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.78■■□□□ 1.24
SF3A1-204ENST00000447376 NRKQ7Z2Y5 1582 aa22.77■■□□□ 1.24
SF3A1-204ENST00000447376 KCNH5Q8NCM2 988 aa22.77■■□□□ 1.24
SF3A1-204ENST00000447376 GJD4Q96KN9 370 aaPredicted RBP22.77■■□□□ 1.24
SF3A1-204ENST00000447376 A0A1W2PP64 1363 aa22.76■■□□□ 1.23
SF3A1-204ENST00000447376 PIK3C2AO00443 1686 aa22.76■■□□□ 1.23
SF3A1-204ENST00000447376 CD163L1Q9NR16 1453 aa22.75■■□□□ 1.23
SF3A1-204ENST00000447376 HSPA5P11021 654 aaKnown RBP22.75■■□□□ 1.23
SF3A1-204ENST00000447376 VPS72Q15906 364 aa22.75■■□□□ 1.23
SF3A1-204ENST00000447376 CPDO75976 1380 aa22.75■■□□□ 1.23
SF3A1-204ENST00000447376 ZBTB7CA1YPR0 619 aa22.74■■□□□ 1.23
SF3A1-204ENST00000447376 ANKRD36BQ8N2N9 1353 aa22.74■■□□□ 1.23
SF3A1-204ENST00000447376 CHRNA2Q15822 529 aa22.73■■□□□ 1.23
SF3A1-204ENST00000447376 SLIT3O75094 1523 aa22.72■■□□□ 1.23
SF3A1-204ENST00000447376 EVA1CP58658 441 aa22.72■■□□□ 1.23
SF3A1-204ENST00000447376 POLR3GLQ9BT43 218 aa22.72■■□□□ 1.23
SF3A1-204ENST00000447376 RGS12O14924 1447 aa22.71■■□□□ 1.23
SF3A1-204ENST00000447376 SOX12O15370 315 aa22.7■■□□□ 1.22
SF3A1-204ENST00000447376 STRN4Q9NRL3 753 aa22.7■■□□□ 1.22
SF3A1-204ENST00000447376 NME9Q86XW9 330 aa22.69■■□□□ 1.22
SF3A1-204ENST00000447376 NRAPQ86VF7 1730 aa22.68■■□□□ 1.22
SF3A1-204ENST00000447376 USP31Q70CQ4 1352 aa22.68■■□□□ 1.22
SF3A1-204ENST00000447376 A0A0G2JS52 829 aa22.68■■□□□ 1.22
SF3A1-204ENST00000447376 MYT1Q01538 1121 aa22.68■■□□□ 1.22
SF3A1-204ENST00000447376 ZEB1P37275 1124 aaPredicted RBP22.67■■□□□ 1.22
SF3A1-204ENST00000447376 COG3Q96JB2 828 aa22.66■■□□□ 1.22
SF3A1-204ENST00000447376 AATKQ6ZMQ8 1374 aa22.65■■□□□ 1.22
SF3A1-204ENST00000447376 GLI3P10071 1580 aa22.65■■□□□ 1.22
SF3A1-204ENST00000447376 USP54Q70EL1 1684 aa22.64■■□□□ 1.21
SF3A1-204ENST00000447376 SPATA31A5Q5VU36 1347 aa22.62■■□□□ 1.21
SF3A1-204ENST00000447376 SPATA31A7Q8IWB4 1347 aa22.62■■□□□ 1.21
SF3A1-204ENST00000447376 ZRANB1Q9UGI0 708 aa22.62■■□□□ 1.21
SF3A1-204ENST00000447376 MYOM1P52179 1685 aa22.62■■□□□ 1.21
SF3A1-204ENST00000447376 LMO7Q8WWI1 1683 aa22.62■■□□□ 1.21
SF3A1-204ENST00000447376 ARHGEF25Q86VW2 580 aa22.61■■□□□ 1.21
SF3A1-204ENST00000447376 CAMTA1Q9Y6Y1 1673 aa22.61■■□□□ 1.21
SF3A1-204ENST00000447376 FAM98CQ17RN3 349 aaKnown RBP22.6■■□□□ 1.21
SF3A1-204ENST00000447376 SEPT12Q8IYM1 358 aa22.6■■□□□ 1.21
SF3A1-204ENST00000447376 OVOS2A0A0J9YW53 1432 aa22.59■■□□□ 1.21
SF3A1-204ENST00000447376 OVOS2Q6IE36 1432 aa22.59■■□□□ 1.21
SF3A1-204ENST00000447376 NFAT5O94916 1531 aa22.59■■□□□ 1.21
SF3A1-204ENST00000447376 USP35Q9P2H5 1018 aa22.59■■□□□ 1.21
SF3A1-204ENST00000447376 SPATA31A1Q5TZJ5 1347 aa22.58■■□□□ 1.21
SF3A1-204ENST00000447376 ABCC6O95255 1503 aa22.58■■□□□ 1.21
SF3A1-204ENST00000447376 COL5A2P05997 1499 aaPredicted RBP22.58■■□□□ 1.2
SF3A1-204ENST00000447376 NSD3Q9BZ95 1437 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms