RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 NSD3Q9BZ95 1437 aa25.39■■□□□ 1.66
SHOX2-203ENST00000441443 IQSEC2Q5JU85 1478 aa25.39■■□□□ 1.66
SHOX2-203ENST00000441443 MLH3Q9UHC1 1453 aa25.39■■□□□ 1.66
SHOX2-203ENST00000441443 HDAC1Q13547 482 aaPredicted RBP25.39■■□□□ 1.65
SHOX2-203ENST00000441443 SMC5Q8IY18 1101 aa25.39■■□□□ 1.65
SHOX2-203ENST00000441443 RAB3GAP1Q15042 981 aa25.38■■□□□ 1.65
SHOX2-203ENST00000441443 TPM2P07951 284 aa25.38■■□□□ 1.65
SHOX2-203ENST00000441443 SHPRHQ149N8 1683 aa25.37■■□□□ 1.65
SHOX2-203ENST00000441443 VGFO15240 615 aaPredicted RBP25.37■■□□□ 1.65
SHOX2-203ENST00000441443 RBM25P49756 843 aaKnown RBP25.37■■□□□ 1.65
SHOX2-203ENST00000441443 MLECQ14165 292 aa25.37■■□□□ 1.65
SHOX2-203ENST00000441443 FBXO31Q5XUX0 539 aaPredicted RBP25.37■■□□□ 1.65
SHOX2-203ENST00000441443 LNPKQ9C0E8 428 aa25.37■■□□□ 1.65
SHOX2-203ENST00000441443 SNX21Q969T3 373 aa25.37■■□□□ 1.65
SHOX2-203ENST00000441443 CD2BP2O95400 341 aaKnown RBP25.37■■□□□ 1.65
SHOX2-203ENST00000441443 FAM69CQ0P6D2 419 aa25.37■■□□□ 1.65
SHOX2-203ENST00000441443 HECW2Q9P2P5 1572 aa25.37■■□□□ 1.65
SHOX2-203ENST00000441443 STAG3Q9UJ98 1225 aa25.37■■□□□ 1.65
SHOX2-203ENST00000441443 YEATS2Q9ULM3 1422 aa25.36■■□□□ 1.65
SHOX2-203ENST00000441443 EXOSC9Q06265 439 aaKnown RBP25.36■■□□□ 1.65
SHOX2-203ENST00000441443 U2AF1L5P0DN76 240 aaPredicted RBP25.35■■□□□ 1.65
SHOX2-203ENST00000441443 U2AF1Q01081 240 aaKnown RBP eCLIP25.35■■□□□ 1.65
SHOX2-203ENST00000441443 CCDC27Q2M243 656 aa25.34■■□□□ 1.65
SHOX2-203ENST00000441443 SKOR2Q2VWA4 1001 aaPredicted RBP25.34■■□□□ 1.65
SHOX2-203ENST00000441443 SRPK2P78362 688 aaKnown RBP25.34■■□□□ 1.65
SHOX2-203ENST00000441443 SSH1Q8WYL5 1049 aa25.34■■□□□ 1.65
SHOX2-203ENST00000441443 DDX19BQ9UMR2 479 aa25.34■■□□□ 1.65
SHOX2-203ENST00000441443 CIZ1Q9ULV3 898 aaPredicted RBP25.33■■□□□ 1.65
SHOX2-203ENST00000441443 NASPP49321 788 aaPredicted RBP25.33■■□□□ 1.65
SHOX2-203ENST00000441443 ABCC3O15438 1527 aa25.33■■□□□ 1.64
SHOX2-203ENST00000441443 ADGRB3O60242 1522 aa25.33■■□□□ 1.64
SHOX2-203ENST00000441443 PDCL3Q9H2J4 239 aa25.32■■□□□ 1.64
SHOX2-203ENST00000441443 NOB1Q9ULX3 412 aaKnown RBP25.32■■□□□ 1.64
SHOX2-203ENST00000441443 LMTK2Q8IWU2 1503 aa25.32■■□□□ 1.64
SHOX2-203ENST00000441443 TMEM57Q8N5G2 664 aa25.31■■□□□ 1.64
SHOX2-203ENST00000441443 RBM42Q9BTD8 480 aaKnown RBP25.31■■□□□ 1.64
SHOX2-203ENST00000441443 MINK1Q8N4C8 1332 aaPredicted RBP25.31■■□□□ 1.64
SHOX2-203ENST00000441443 SSFA2P28290 1259 aa25.31■■□□□ 1.64
SHOX2-203ENST00000441443 CCDC173Q0VFZ6 552 aa25.31■■□□□ 1.64
SHOX2-203ENST00000441443 ATF7IPQ6VMQ6 1270 aa25.31■■□□□ 1.64
SHOX2-203ENST00000441443 CFAP53Q96M91 514 aa25.3■■□□□ 1.64
SHOX2-203ENST00000441443 KIF2CQ99661 725 aa25.3■■□□□ 1.64
SHOX2-203ENST00000441443 RBM10P98175 930 aaKnown RBP25.29■■□□□ 1.64
SHOX2-203ENST00000441443 KIAA1210Q9ULL0 1709 aa25.29■■□□□ 1.64
SHOX2-203ENST00000441443 RPGRIP1LQ68CZ1 1315 aa25.29■■□□□ 1.64
SHOX2-203ENST00000441443 ZSCAN30Q86W11 494 aa25.29■■□□□ 1.64
SHOX2-203ENST00000441443 EVC2Q86UK5 1308 aa25.28■■□□□ 1.64
SHOX2-203ENST00000441443 NUCB1Q02818 461 aa25.27■■□□□ 1.64
SHOX2-203ENST00000441443 DDX49Q9Y6V7 483 aaKnown RBP25.27■■□□□ 1.64
SHOX2-203ENST00000441443 NRXN1Q9ULB1 1477 aa25.27■■□□□ 1.64
SHOX2-203ENST00000441443 PPP1R9BQ96SB3 815 aa25.26■■□□□ 1.63
SHOX2-203ENST00000441443 ZBTB40Q9NUA8 1239 aa25.26■■□□□ 1.63
SHOX2-203ENST00000441443 ANP32BQ92688 251 aaKnown RBP25.26■■□□□ 1.63
SHOX2-203ENST00000441443 CFAP74Q9C0B2 1584 aa25.26■■□□□ 1.63
SHOX2-203ENST00000441443 MSNP26038 577 aaKnown RBP25.26■■□□□ 1.63
SHOX2-203ENST00000441443 GAS2L2Q8NHY3 880 aa25.25■■□□□ 1.63
SHOX2-203ENST00000441443 CHD1LQ86WJ1 897 aa25.25■■□□□ 1.63
SHOX2-203ENST00000441443 K7ELQ4 463 aaPredicted RBP25.24■■□□□ 1.63
SHOX2-203ENST00000441443 GGNBP2Q9H3C7 697 aa25.24■■□□□ 1.63
SHOX2-203ENST00000441443 NEO1Q92859 1461 aa25.24■■□□□ 1.63
SHOX2-203ENST00000441443 OFD1O75665 1012 aa25.23■■□□□ 1.63
SHOX2-203ENST00000441443 SBNO2Q9Y2G9 1366 aa25.23■■□□□ 1.63
SHOX2-203ENST00000441443 IFT172Q9UG01 1749 aa25.23■■□□□ 1.63
SHOX2-203ENST00000441443 PRAM1Q96QH2 718 aa25.23■■□□□ 1.63
SHOX2-203ENST00000441443 GOLGA6L22H0YM25 854 aa25.22■■□□□ 1.63
SHOX2-203ENST00000441443 PTMSP20962 102 aa25.22■■□□□ 1.63
SHOX2-203ENST00000441443 U2SURPO15042 1029 aaKnown RBP25.21■■□□□ 1.63
SHOX2-203ENST00000441443 NCLP19338 710 aaKnown RBP25.21■■□□□ 1.63
SHOX2-203ENST00000441443 RIPK4P57078 832 aa25.21■■□□□ 1.63
SHOX2-203ENST00000441443 NEURL4Q96JN8 1562 aa25.21■■□□□ 1.63
SHOX2-203ENST00000441443 ANKRD45Q5TZF3 282 aa25.21■■□□□ 1.63
SHOX2-203ENST00000441443 SLC52A1Q9NWF4 448 aa25.21■■□□□ 1.63
SHOX2-203ENST00000441443 CT47B1P0C2W7 299 aaPredicted RBP25.2■■□□□ 1.62
SHOX2-203ENST00000441443 SIGLEC1Q9BZZ2 1709 aa25.2■■□□□ 1.62
SHOX2-203ENST00000441443 BAG4O95429 457 aaKnown RBP25.2■■□□□ 1.62
SHOX2-203ENST00000441443 ADGRB1O14514 1584 aa25.19■■□□□ 1.62
SHOX2-203ENST00000441443 DIP2CQ9Y2E4 1556 aa25.19■■□□□ 1.62
SHOX2-203ENST00000441443 R3HCC1Q9Y3T6 440 aaKnown RBP25.19■■□□□ 1.62
SHOX2-203ENST00000441443 KLHL40Q2TBA0 621 aa25.19■■□□□ 1.62
SHOX2-203ENST00000441443 BMP2KLQ5H9B9 411 aa25.19■■□□□ 1.62
SHOX2-203ENST00000441443 PPLO60437 1756 aa25.19■■□□□ 1.62
SHOX2-203ENST00000441443 FAM13BQ9NYF5 915 aa25.18■■□□□ 1.62
SHOX2-203ENST00000441443 CAMSAP1Q5T5Y3 1602 aa25.18■■□□□ 1.62
SHOX2-203ENST00000441443 TBC1D9Q6ZT07 1266 aa25.18■■□□□ 1.62
SHOX2-203ENST00000441443 TRIM35Q9UPQ4 493 aa25.18■■□□□ 1.62
SHOX2-203ENST00000441443 QRICH2Q9H0J4 1663 aa25.17■■□□□ 1.62
SHOX2-203ENST00000441443 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.17■■□□□ 1.62
SHOX2-203ENST00000441443 TMPOP42166 694 aaKnown RBP25.17■■□□□ 1.62
SHOX2-203ENST00000441443 C1orf115Q9H7X2 142 aa25.17■■□□□ 1.62
SHOX2-203ENST00000441443 MCTP1Q6DN14 999 aa25.16■■□□□ 1.62
SHOX2-203ENST00000441443 CAVIN1Q6NZI2 390 aaKnown RBP25.16■■□□□ 1.62
SHOX2-203ENST00000441443 SETBP1Q9Y6X0 1596 aa25.14■■□□□ 1.62
SHOX2-203ENST00000441443 XPCQ01831 940 aaPredicted RBP25.13■■□□□ 1.61
SHOX2-203ENST00000441443 ARID3AQ99856 593 aa25.13■■□□□ 1.61
SHOX2-203ENST00000441443 AK9Q5TCS8 1911 aa25.13■■□□□ 1.61
SHOX2-203ENST00000441443 GLI2P10070 1586 aa25.12■■□□□ 1.61
SHOX2-203ENST00000441443 IPO8O15397 1037 aaKnown RBP25.12■■□□□ 1.61
SHOX2-203ENST00000441443 FBLN1P23142 703 aa25.11■■□□□ 1.61
SHOX2-203ENST00000441443 PLEKHF1Q96S99 279 aa25.11■■□□□ 1.61
SHOX2-203ENST00000441443 RBSNQ9H1K0 784 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 161.2 ms