RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 SBNO1A3KN83 1393 aa16.87■□□□□ 0.29
LINC00339-204ENST00000434233 NSD3Q9BZ95 1437 aa16.87■□□□□ 0.29
LINC00339-204ENST00000434233 CGNL1Q0VF96 1302 aa16.86■□□□□ 0.29
LINC00339-204ENST00000434233 FYB1O15117 783 aa16.85■□□□□ 0.29
LINC00339-204ENST00000434233 PAK3O75914 559 aaPredicted RBP16.85■□□□□ 0.29
LINC00339-204ENST00000434233 XPCQ01831 940 aaPredicted RBP16.85■□□□□ 0.29
LINC00339-204ENST00000434233 AMER1Q5JTC6 1135 aaPredicted RBP16.85■□□□□ 0.29
LINC00339-204ENST00000434233 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.85■□□□□ 0.29
LINC00339-204ENST00000434233 PXDNQ92626 1479 aa16.85■□□□□ 0.29
LINC00339-204ENST00000434233 AHDC1Q5TGY3 1603 aaPredicted RBP16.85■□□□□ 0.29
LINC00339-204ENST00000434233 LRRC59Q96AG4 307 aaKnown RBP16.84■□□□□ 0.29
LINC00339-204ENST00000434233 NPC1L1Q9UHC9 1359 aa16.84■□□□□ 0.29
LINC00339-204ENST00000434233 SPATA31A3Q5VYP0 1347 aa16.83■□□□□ 0.28
LINC00339-204ENST00000434233 NRKQ7Z2Y5 1582 aa16.83■□□□□ 0.28
LINC00339-204ENST00000434233 ABTB2Q8N961 1025 aa16.83■□□□□ 0.28
LINC00339-204ENST00000434233 TRPM3Q9HCF6 1732 aaPredicted RBP16.83■□□□□ 0.28
LINC00339-204ENST00000434233 USP31Q70CQ4 1352 aa16.81■□□□□ 0.28
LINC00339-204ENST00000434233 NLRP13Q86W25 1043 aa16.81■□□□□ 0.28
LINC00339-204ENST00000434233 NME9Q86XW9 330 aa16.81■□□□□ 0.28
LINC00339-204ENST00000434233 NSD2O96028 1365 aa16.8■□□□□ 0.28
LINC00339-204ENST00000434233 PHLPP1O60346 1717 aa16.8■□□□□ 0.28
LINC00339-204ENST00000434233 NLRP6P59044 892 aa16.8■□□□□ 0.28
LINC00339-204ENST00000434233 DIEXFQ68CQ4 756 aaKnown RBP16.8■□□□□ 0.28
LINC00339-204ENST00000434233 GGNBP2Q9H3C7 697 aa16.8■□□□□ 0.28
LINC00339-204ENST00000434233 TNS3Q68CZ2 1445 aa16.79■□□□□ 0.28
LINC00339-204ENST00000434233 CC2D1BQ5T0F9 858 aaKnown RBP16.79■□□□□ 0.28
LINC00339-204ENST00000434233 LMOD2Q6P5Q4 547 aa16.79■□□□□ 0.28
LINC00339-204ENST00000434233 COG3Q96JB2 828 aa16.79■□□□□ 0.28
LINC00339-204ENST00000434233 ALS2Q96Q42 1657 aa16.78■□□□□ 0.28
LINC00339-204ENST00000434233 ARHGEF10O15013 1369 aa16.78■□□□□ 0.28
LINC00339-204ENST00000434233 KIF20BQ96Q89 1820 aa16.78■□□□□ 0.28
LINC00339-204ENST00000434233 FBXO41Q8TF61 875 aa16.78■□□□□ 0.28
LINC00339-204ENST00000434233 ZRANB1Q9UGI0 708 aa16.78■□□□□ 0.28
LINC00339-204ENST00000434233 RALBP1Q15311 655 aa16.76■□□□□ 0.27
LINC00339-204ENST00000434233 NUTM2GQ5VZR2 741 aa16.76■□□□□ 0.27
LINC00339-204ENST00000434233 MORC1Q86VD1 984 aa16.76■□□□□ 0.27
LINC00339-204ENST00000434233 COL16A1Q07092 1604 aaPredicted RBP16.76■□□□□ 0.27
LINC00339-204ENST00000434233 PIK3C2AO00443 1686 aa16.75■□□□□ 0.27
LINC00339-204ENST00000434233 ANP32CO43423 234 aa16.75■□□□□ 0.27
LINC00339-204ENST00000434233 ANKRD26Q9UPS8 1709 aa16.74■□□□□ 0.27
LINC00339-204ENST00000434233 OVOS2A0A0J9YW53 1432 aa16.74■□□□□ 0.27
LINC00339-204ENST00000434233 OVOS2Q6IE36 1432 aa16.74■□□□□ 0.27
LINC00339-204ENST00000434233 HSPA1LP34931 641 aa16.74■□□□□ 0.27
LINC00339-204ENST00000434233 KCNH5Q8NCM2 988 aa16.74■□□□□ 0.27
LINC00339-204ENST00000434233 USP54Q70EL1 1684 aa16.74■□□□□ 0.27
LINC00339-204ENST00000434233 CNGB1Q14028 1251 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-204ENST00000434233 PRKRIP1Q9H875 184 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-204ENST00000434233 USP19O94966 1318 aa16.72■□□□□ 0.27
LINC00339-204ENST00000434233 PNPLA6Q8IY17 1366 aa16.72■□□□□ 0.27
LINC00339-204ENST00000434233 PARD3Q8TEW0 1356 aa16.72■□□□□ 0.27
LINC00339-204ENST00000434233 GCP02774 474 aa16.71■□□□□ 0.27
LINC00339-204ENST00000434233 JCADQ9P266 1359 aa16.71■□□□□ 0.27
LINC00339-204ENST00000434233 MARF1Q9Y4F3 1742 aaKnown RBP16.7■□□□□ 0.26
LINC00339-204ENST00000434233 AATKQ6ZMQ8 1374 aa16.7■□□□□ 0.26
LINC00339-204ENST00000434233 CABLES1Q8TDN4 633 aa16.69■□□□□ 0.26
LINC00339-204ENST00000434233 COL22A1Q8NFW1 1626 aaPredicted RBP16.69■□□□□ 0.26
LINC00339-204ENST00000434233 SLIT3O75094 1523 aa16.69■□□□□ 0.26
LINC00339-204ENST00000434233 MED1Q15648 1581 aaPredicted RBP16.68■□□□□ 0.26
LINC00339-204ENST00000434233 PPP2R1AP30153 589 aa16.67■□□□□ 0.26
LINC00339-204ENST00000434233 TNNT2P45379 298 aaPredicted RBP16.67■□□□□ 0.26
LINC00339-204ENST00000434233 MAP2P11137 1827 aaKnown RBP16.67■□□□□ 0.26
LINC00339-204ENST00000434233 SHPRHQ149N8 1683 aa16.66■□□□□ 0.26
LINC00339-204ENST00000434233 FBLN1P23142 703 aa16.66■□□□□ 0.26
LINC00339-204ENST00000434233 POLKQ9UBT6 870 aa16.66■□□□□ 0.26
LINC00339-204ENST00000434233 CRYBG1Q9Y4K1 1723 aa16.66■□□□□ 0.26
LINC00339-204ENST00000434233 MYBBP1AQ9BQG0 1328 aaKnown RBP16.66■□□□□ 0.26
LINC00339-204ENST00000434233 PLEKHG5O94827 1062 aa16.65■□□□□ 0.26
LINC00339-204ENST00000434233 HAP1P54257 671 aaPredicted RBP16.65■□□□□ 0.26
LINC00339-204ENST00000434233 ARHGEF25Q86VW2 580 aa16.65■□□□□ 0.26
LINC00339-204ENST00000434233 SPATA31A6Q5VVP1 1343 aa16.65■□□□□ 0.26
LINC00339-204ENST00000434233 PHRF1Q9P1Y6 1649 aaKnown RBP16.64■□□□□ 0.25
LINC00339-204ENST00000434233 SOX12O15370 315 aa16.64■□□□□ 0.25
LINC00339-204ENST00000434233 MTHFSP49914 203 aa16.63■□□□□ 0.25
LINC00339-204ENST00000434233 ZC3H6P61129 1189 aaKnown RBP16.63■□□□□ 0.25
LINC00339-204ENST00000434233 RRS1Q15050 365 aaKnown RBP16.63■□□□□ 0.25
LINC00339-204ENST00000434233 NFAT5O94916 1531 aa16.63■□□□□ 0.25
LINC00339-204ENST00000434233 CPDO75976 1380 aa16.63■□□□□ 0.25
LINC00339-204ENST00000434233 MAP3K19Q56UN5 1328 aa16.62■□□□□ 0.25
LINC00339-204ENST00000434233 KIF24Q5T7B8 1368 aa16.62■□□□□ 0.25
LINC00339-204ENST00000434233 AMPHP49418 695 aa16.61■□□□□ 0.25
LINC00339-204ENST00000434233 MIER1Q8N108 512 aa16.61■□□□□ 0.25
LINC00339-204ENST00000434233 EMILIN1Q9Y6C2 1016 aa16.61■□□□□ 0.25
LINC00339-204ENST00000434233 ABCA3Q99758 1704 aa16.61■□□□□ 0.25
LINC00339-204ENST00000434233 NUTM2BA6NNL0 878 aaPredicted RBP16.6■□□□□ 0.25
LINC00339-204ENST00000434233 NUTM2EB1AL46 878 aaPredicted RBP16.6■□□□□ 0.25
LINC00339-204ENST00000434233 NUTM2AQ8IVF1 878 aaPredicted RBP16.6■□□□□ 0.25
LINC00339-204ENST00000434233 IP6K1Q92551 441 aa16.6■□□□□ 0.25
LINC00339-204ENST00000434233 INSRP06213 1382 aa16.59■□□□□ 0.25
LINC00339-204ENST00000434233 KIAA0232Q92628 1395 aa16.59■□□□□ 0.25
LINC00339-204ENST00000434233 SMG6Q86US8 1419 aaKnown RBP16.59■□□□□ 0.25
LINC00339-204ENST00000434233 LTN1O94822 1766 aa16.59■□□□□ 0.25
LINC00339-204ENST00000434233 FAM83GA6ND36 823 aa16.58■□□□□ 0.24
LINC00339-204ENST00000434233 CCER2I3L3R5 266 aa16.58■□□□□ 0.24
LINC00339-204ENST00000434233 PPM1GO15355 546 aaPredicted RBP16.58■□□□□ 0.24
LINC00339-204ENST00000434233 HOXC9P31274 260 aa16.58■□□□□ 0.24
LINC00339-204ENST00000434233 CFAP53Q96M91 514 aa16.58■□□□□ 0.24
LINC00339-204ENST00000434233 PRDM11Q9NQV5 511 aa16.58■□□□□ 0.24
LINC00339-204ENST00000434233 RTL1A6NKG5 1358 aa16.57■□□□□ 0.24
LINC00339-204ENST00000434233 FLT4P35916 1363 aa16.57■□□□□ 0.24
LINC00339-204ENST00000434233 ZBTB7CA1YPR0 619 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms