RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CABP2Q9NPB3 220 aa17.49■□□□□ 0.39
COL6A3-207ENST00000433762 ZKSCAN2Q63HK3 967 aa17.48■□□□□ 0.39
COL6A3-207ENST00000433762 RRP7AQ9Y3A4 280 aaKnown RBP17.48■□□□□ 0.39
COL6A3-207ENST00000433762 SPATA31D1Q6ZQQ2 1576 aa17.48■□□□□ 0.39
COL6A3-207ENST00000433762 MVPQ14764 893 aaKnown RBP17.48■□□□□ 0.39
COL6A3-207ENST00000433762 USP19O94966 1318 aa17.48■□□□□ 0.39
COL6A3-207ENST00000433762 NEUROD2Q15784 382 aa17.47■□□□□ 0.39
COL6A3-207ENST00000433762 FRAT1Q92837 279 aaPredicted RBP17.47■□□□□ 0.39
COL6A3-207ENST00000433762 TMPOP42166 694 aaKnown RBP17.46■□□□□ 0.39
COL6A3-207ENST00000433762 SRPK2P78362 688 aaKnown RBP17.46■□□□□ 0.39
COL6A3-207ENST00000433762 NFKBIBQ15653 356 aa17.46■□□□□ 0.39
COL6A3-207ENST00000433762 HDGFL2Q7Z4V5 671 aaPredicted RBP17.46■□□□□ 0.39
COL6A3-207ENST00000433762 PPIP5K1Q6PFW1 1433 aa17.46■□□□□ 0.38
COL6A3-207ENST00000433762 ZNF428Q96B54 188 aa17.45■□□□□ 0.38
COL6A3-207ENST00000433762 FYB1O15117 783 aa17.45■□□□□ 0.38
COL6A3-207ENST00000433762 RLBP1P12271 317 aa17.45■□□□□ 0.38
COL6A3-207ENST00000433762 BECN1Q14457 450 aa17.45■□□□□ 0.38
COL6A3-207ENST00000433762 PCDHB15Q9Y5E8 787 aa17.45■□□□□ 0.38
COL6A3-207ENST00000433762 DZIP1LQ8IYY4 767 aaKnown RBP17.44■□□□□ 0.38
COL6A3-207ENST00000433762 KNDC1Q76NI1 1749 aa17.44■□□□□ 0.38
COL6A3-207ENST00000433762 HDAC1Q13547 482 aaPredicted RBP17.43■□□□□ 0.38
COL6A3-207ENST00000433762 TRIM35Q9UPQ4 493 aa17.43■□□□□ 0.38
COL6A3-207ENST00000433762 BRPF1P55201 1214 aaPredicted RBP17.42■□□□□ 0.38
COL6A3-207ENST00000433762 PRAM1Q96QH2 718 aa17.42■□□□□ 0.38
COL6A3-207ENST00000433762 UPF2Q9HAU5 1272 aaKnown RBP17.42■□□□□ 0.38
COL6A3-207ENST00000433762 DDX19BQ9UMR2 479 aa17.42■□□□□ 0.38
COL6A3-207ENST00000433762 KIF16BQ96L93 1317 aa17.42■□□□□ 0.38
COL6A3-207ENST00000433762 POGKQ9P215 609 aa17.42■□□□□ 0.38
COL6A3-207ENST00000433762 FCHSD2O94868 740 aa17.41■□□□□ 0.38
COL6A3-207ENST00000433762 ALDH1L2Q3SY69 923 aa17.41■□□□□ 0.38
COL6A3-207ENST00000433762 FAM135BQ49AJ0 1406 aa17.41■□□□□ 0.38
COL6A3-207ENST00000433762 A2ML1A8K2U0 1454 aa17.41■□□□□ 0.38
COL6A3-207ENST00000433762 LRRC7Q96NW7 1537 aa17.41■□□□□ 0.38
COL6A3-207ENST00000433762 DIAPH1O60610 1272 aaKnown RBP17.4■□□□□ 0.38
COL6A3-207ENST00000433762 FTSJ3Q8IY81 847 aaKnown RBP17.4■□□□□ 0.38
COL6A3-207ENST00000433762 PDZRN3Q9UPQ7 1066 aa17.4■□□□□ 0.38
COL6A3-207ENST00000433762 GSE1Q14687 1217 aa17.4■□□□□ 0.38
COL6A3-207ENST00000433762 NUTM2DQ5VT03 806 aaPredicted RBP17.4■□□□□ 0.38
COL6A3-207ENST00000433762 GGNBP2Q9H3C7 697 aa17.39■□□□□ 0.38
COL6A3-207ENST00000433762 IPO8O15397 1037 aaKnown RBP17.38■□□□□ 0.37
COL6A3-207ENST00000433762 ATF7IPQ6VMQ6 1270 aa17.38■□□□□ 0.37
COL6A3-207ENST00000433762 TBC1D32Q96NH3 1257 aa17.38■□□□□ 0.37
COL6A3-207ENST00000433762 MAP2P11137 1827 aaKnown RBP17.38■□□□□ 0.37
COL6A3-207ENST00000433762 MINK1Q8N4C8 1332 aaPredicted RBP17.38■□□□□ 0.37
COL6A3-207ENST00000433762 SMC4Q9NTJ3 1288 aa17.38■□□□□ 0.37
COL6A3-207ENST00000433762 STK26Q9P289 416 aa17.38■□□□□ 0.37
COL6A3-207ENST00000433762 MON2Q7Z3U7 1717 aa17.38■□□□□ 0.37
COL6A3-207ENST00000433762 CDK12Q9NYV4 1490 aaPredicted RBP17.37■□□□□ 0.37
COL6A3-207ENST00000433762 EXOSC9Q06265 439 aaKnown RBP17.37■□□□□ 0.37
COL6A3-207ENST00000433762 CDK19Q9BWU1 502 aa17.37■□□□□ 0.37
COL6A3-207ENST00000433762 EDC4Q6P2E9 1401 aaKnown RBP17.37■□□□□ 0.37
COL6A3-207ENST00000433762 U2SURPO15042 1029 aaKnown RBP17.37■□□□□ 0.37
COL6A3-207ENST00000433762 CPSF1Q10570 1443 aaKnown RBP17.36■□□□□ 0.37
COL6A3-207ENST00000433762 NRXN3Q9Y4C0 1643 aa17.36■□□□□ 0.37
COL6A3-207ENST00000433762 CALD1Q05682 793 aaKnown RBP17.36■□□□□ 0.37
COL6A3-207ENST00000433762 CHMP4BQ9H444 224 aaKnown RBP17.36■□□□□ 0.37
COL6A3-207ENST00000433762 AATKQ6ZMQ8 1374 aa17.36■□□□□ 0.37
COL6A3-207ENST00000433762 TRIM27P14373 513 aa17.36■□□□□ 0.37
COL6A3-207ENST00000433762 RIMS2Q9UQ26 1411 aa17.35■□□□□ 0.37
COL6A3-207ENST00000433762 SLC4A3P48751 1232 aa17.35■□□□□ 0.37
COL6A3-207ENST00000433762 SAFB2Q14151 953 aaKnown RBP eCLIP17.35■□□□□ 0.37
COL6A3-207ENST00000433762 SMC5Q8IY18 1101 aa17.35■□□□□ 0.37
COL6A3-207ENST00000433762 SIRT1Q96EB6 747 aa17.35■□□□□ 0.37
COL6A3-207ENST00000433762 BCL2L13Q9BXK5 485 aa17.35■□□□□ 0.37
COL6A3-207ENST00000433762 TNNQ9UQP3 1299 aa17.35■□□□□ 0.37
COL6A3-207ENST00000433762 AKAP12Q02952 1782 aa17.35■□□□□ 0.37
COL6A3-207ENST00000433762 SSH1Q8WYL5 1049 aa17.35■□□□□ 0.37
COL6A3-207ENST00000433762 TECPR2O15040 1411 aa17.34■□□□□ 0.37
COL6A3-207ENST00000433762 RIPK4P57078 832 aa17.34■□□□□ 0.37
COL6A3-207ENST00000433762 PIK3R4Q99570 1358 aa17.33■□□□□ 0.37
COL6A3-207ENST00000433762 CPS1P31327 1500 aa17.33■□□□□ 0.36
COL6A3-207ENST00000433762 TSR2Q969E8 191 aaKnown RBP17.33■□□□□ 0.36
COL6A3-207ENST00000433762 SEC24BO95487 1268 aa17.32■□□□□ 0.36
COL6A3-207ENST00000433762 ARHGAP45Q92619 1136 aa17.32■□□□□ 0.36
COL6A3-207ENST00000433762 RSPH6AQ9H0K4 717 aa17.32■□□□□ 0.36
COL6A3-207ENST00000433762 ITSN1Q15811 1721 aa17.32■□□□□ 0.36
COL6A3-207ENST00000433762 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.31■□□□□ 0.36
COL6A3-207ENST00000433762 ZBTB40Q9NUA8 1239 aa17.31■□□□□ 0.36
COL6A3-207ENST00000433762 CABP1Q9NZU7 370 aa17.31■□□□□ 0.36
COL6A3-207ENST00000433762 PTCH1Q13635 1447 aa17.31■□□□□ 0.36
COL6A3-207ENST00000433762 MLECQ14165 292 aa17.31■□□□□ 0.36
COL6A3-207ENST00000433762 C3P01024 1663 aa17.31■□□□□ 0.36
COL6A3-207ENST00000433762 NRKQ7Z2Y5 1582 aa17.3■□□□□ 0.36
COL6A3-207ENST00000433762 FBXO31Q5XUX0 539 aaPredicted RBP17.3■□□□□ 0.36
COL6A3-207ENST00000433762 POLKQ9UBT6 870 aa17.3■□□□□ 0.36
COL6A3-207ENST00000433762 STAG3Q9UJ98 1225 aa17.3■□□□□ 0.36
COL6A3-207ENST00000433762 NFE2L2Q16236 605 aa17.29■□□□□ 0.36
COL6A3-207ENST00000433762 NOB1Q9ULX3 412 aaKnown RBP17.29■□□□□ 0.36
COL6A3-207ENST00000433762 ITPRIPQ8IWB1 547 aa17.28■□□□□ 0.36
COL6A3-207ENST00000433762 ANTXR1Q9H6X2 564 aa17.28■□□□□ 0.36
COL6A3-207ENST00000433762 DLG5Q8TDM6 1919 aa17.28■□□□□ 0.36
COL6A3-207ENST00000433762 LMOD3Q0VAK6 560 aa17.28■□□□□ 0.36
COL6A3-207ENST00000433762 IFT57Q9NWB7 429 aa17.27■□□□□ 0.36
COL6A3-207ENST00000433762 KIF24Q5T7B8 1368 aa17.27■□□□□ 0.35
COL6A3-207ENST00000433762 FRAT2O75474 233 aaPredicted RBP17.26■□□□□ 0.35
COL6A3-207ENST00000433762 GNAI1P63096 354 aa17.26■□□□□ 0.35
COL6A3-207ENST00000433762 WASLO00401 505 aaPredicted RBP17.25■□□□□ 0.35
COL6A3-207ENST00000433762 TMEM57Q8N5G2 664 aa17.25■□□□□ 0.35
COL6A3-207ENST00000433762 PRKAR2BP31323 418 aa17.25■□□□□ 0.35
COL6A3-207ENST00000433762 ZNF853P0CG23 659 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms