RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 ARHGAP5Q13017 1502 aa14.28□□□□□ -0.12
HMGCS1-202ENST00000433297 CCDC27Q2M243 656 aa14.28□□□□□ -0.12
HMGCS1-202ENST00000433297 SAMD9LQ8IVG5 1584 aa14.27□□□□□ -0.12
HMGCS1-202ENST00000433297 ELL2O00472 640 aaPredicted RBP14.27□□□□□ -0.13
HMGCS1-202ENST00000433297 ARHGEF5Q12774 1597 aa14.27□□□□□ -0.13
HMGCS1-202ENST00000433297 SYCE3A1L190 88 aa14.27□□□□□ -0.13
HMGCS1-202ENST00000433297 SLC24A1O60721 1099 aa14.27□□□□□ -0.13
HMGCS1-202ENST00000433297 KIF16BQ96L93 1317 aa14.26□□□□□ -0.13
HMGCS1-202ENST00000433297 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.26□□□□□ -0.13
HMGCS1-202ENST00000433297 SCAPERQ9BY12 1400 aa14.26□□□□□ -0.13
HMGCS1-202ENST00000433297 TMPOP42166 694 aaKnown RBP14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 TMEM132EQ6IEE7 984 aa14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 LMBRD1Q9NUN5 540 aa14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 ERVK-7P63135 1459 aa14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 ZNF445P59923 1031 aa14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 SAFB2Q14151 953 aaKnown RBP eCLIP14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 JARID2Q92833 1246 aaPredicted RBP14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 ZKSCAN5Q9Y2L8 839 aa14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 APBB1O00213 710 aa14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 FOXD4L6Q3SYB3 417 aaPredicted RBP14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 FOXD4L3Q6VB84 417 aaPredicted RBP14.25□□□□□ -0.13
HMGCS1-202ENST00000433297 NUCB2P80303 420 aa14.24□□□□□ -0.13
HMGCS1-202ENST00000433297 ZNF500O60304 480 aaPredicted RBP14.24□□□□□ -0.13
HMGCS1-202ENST00000433297 TERF1P54274 439 aa14.24□□□□□ -0.13
HMGCS1-202ENST00000433297 ZGPATQ8N5A5 531 aaKnown RBP14.24□□□□□ -0.13
HMGCS1-202ENST00000433297 TSC1Q92574 1164 aa14.24□□□□□ -0.13
HMGCS1-202ENST00000433297 CSPP1Q1MSJ5 1256 aa14.23□□□□□ -0.13
HMGCS1-202ENST00000433297 IFT140Q96RY7 1462 aa14.23□□□□□ -0.13
HMGCS1-202ENST00000433297 CDC45O75419 566 aa14.23□□□□□ -0.13
HMGCS1-202ENST00000433297 CT47B1P0C2W7 299 aaPredicted RBP14.23□□□□□ -0.13
HMGCS1-202ENST00000433297 AFAP1Q8N556 730 aa14.23□□□□□ -0.13
HMGCS1-202ENST00000433297 TRIM35Q9UPQ4 493 aa14.23□□□□□ -0.13
HMGCS1-202ENST00000433297 MRC2Q9UBG0 1479 aa14.22□□□□□ -0.13
HMGCS1-202ENST00000433297 GPT2Q8TD30 523 aa14.22□□□□□ -0.13
HMGCS1-202ENST00000433297 MADDQ8WXG6 1647 aa14.22□□□□□ -0.13
HMGCS1-202ENST00000433297 RNF17Q9BXT8 1623 aaKnown RBP14.22□□□□□ -0.13
HMGCS1-202ENST00000433297 KDM5AP29375 1690 aaKnown RBP14.22□□□□□ -0.13
HMGCS1-202ENST00000433297 DYNC1I1O14576 645 aa14.22□□□□□ -0.13
HMGCS1-202ENST00000433297 HS1BP3Q53T59 392 aa14.22□□□□□ -0.13
HMGCS1-202ENST00000433297 STAC3Q96MF2 364 aa14.21□□□□□ -0.13
HMGCS1-202ENST00000433297 MYOM1P52179 1685 aa14.21□□□□□ -0.13
HMGCS1-202ENST00000433297 ABCA8O94911 1581 aa14.21□□□□□ -0.13
HMGCS1-202ENST00000433297 GGNBP2Q9H3C7 697 aa14.21□□□□□ -0.13
HMGCS1-202ENST00000433297 IQGAP1P46940 1657 aa14.21□□□□□ -0.13
HMGCS1-202ENST00000433297 AK9Q5TCS8 1911 aa14.21□□□□□ -0.14
HMGCS1-202ENST00000433297 FAM177BA6PVY3 158 aa14.21□□□□□ -0.14
HMGCS1-202ENST00000433297 SASS6Q6UVJ0 657 aa14.21□□□□□ -0.14
HMGCS1-202ENST00000433297 CCDC39Q9UFE4 941 aa14.21□□□□□ -0.14
HMGCS1-202ENST00000433297 NSFL1CQ9UNZ2 370 aaKnown RBP14.21□□□□□ -0.14
HMGCS1-202ENST00000433297 ATP10AO60312 1499 aa14.21□□□□□ -0.14
HMGCS1-202ENST00000433297 KIF3BO15066 747 aa14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 TMEM63CQ9P1W3 806 aa14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 UNC13BO14795 1591 aa14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 RABEP1Q15276 862 aa14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 NUTM2DQ5VT03 806 aaPredicted RBP14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 GCC1Q96CN9 775 aa14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 ZNF830Q96NB3 372 aaPredicted RBP14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 NOL8Q76FK4 1167 aaKnown RBP14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 PDLIM2Q96JY6 352 aa14.2□□□□□ -0.14
HMGCS1-202ENST00000433297 IBTKQ9P2D0 1353 aaPredicted RBP14.19□□□□□ -0.14
HMGCS1-202ENST00000433297 IQGAP3Q86VI3 1631 aa14.19□□□□□ -0.14
HMGCS1-202ENST00000433297 IQSEC2Q5JU85 1478 aa14.19□□□□□ -0.14
HMGCS1-202ENST00000433297 CBX1P83916 185 aa14.19□□□□□ -0.14
HMGCS1-202ENST00000433297 C16orf71Q8IYS4 520 aaPredicted RBP14.19□□□□□ -0.14
HMGCS1-202ENST00000433297 MTERF4Q7Z6M4 381 aaKnown RBP14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 SMAP1Q8IYB5 467 aaPredicted RBP14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 KANK1Q14678 1352 aa14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 SPAG9O60271 1321 aaKnown RBP14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 ZBTB7BO15156 539 aaPredicted RBP14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 LRSAM1Q6UWE0 723 aa14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 CLEC17AQ6ZS10 378 aa14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 THUMPD2Q9BTF0 503 aaKnown RBP14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 CABP2Q9NPB3 220 aa14.18□□□□□ -0.14
HMGCS1-202ENST00000433297 MAST1Q9Y2H9 1570 aa14.17□□□□□ -0.14
HMGCS1-202ENST00000433297 GSPT1P15170 499 aaKnown RBP14.17□□□□□ -0.14
HMGCS1-202ENST00000433297 PTPRTO14522 1441 aa14.17□□□□□ -0.14
HMGCS1-202ENST00000433297 ST18O60284 1047 aa14.17□□□□□ -0.14
HMGCS1-202ENST00000433297 PLCB2Q00722 1185 aa14.17□□□□□ -0.14
HMGCS1-202ENST00000433297 EFCAB2Q5VUJ9 269 aa14.17□□□□□ -0.14
HMGCS1-202ENST00000433297 CDC42BPBQ9Y5S2 1711 aa14.17□□□□□ -0.14
HMGCS1-202ENST00000433297 ZNF518AQ6AHZ1 1483 aa14.16□□□□□ -0.14
HMGCS1-202ENST00000433297 DUOX2Q9NRD8 1548 aa14.16□□□□□ -0.14
HMGCS1-202ENST00000433297 KIAA2012Q0VF49 1180 aa14.16□□□□□ -0.14
HMGCS1-202ENST00000433297 PPIP5K1Q6PFW1 1433 aa14.16□□□□□ -0.14
HMGCS1-202ENST00000433297 SIRT2Q8IXJ6 389 aa14.16□□□□□ -0.14
HMGCS1-202ENST00000433297 C17orf53Q8N3J3 647 aaPredicted RBP14.15□□□□□ -0.14
HMGCS1-202ENST00000433297 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.15□□□□□ -0.146e-7■■■□□ 15.3
HMGCS1-202ENST00000433297 ATAD2Q6PL18 1390 aa14.15□□□□□ -0.14
HMGCS1-202ENST00000433297 PLEKHF1Q96S99 279 aa14.15□□□□□ -0.14
HMGCS1-202ENST00000433297 TTC37Q6PGP7 1564 aa14.15□□□□□ -0.14
HMGCS1-202ENST00000433297 CEP152O94986 1710 aa14.15□□□□□ -0.14
HMGCS1-202ENST00000433297 CCDC94Q9BW85 323 aaPredicted RBP14.14□□□□□ -0.15
HMGCS1-202ENST00000433297 USP26Q9BXU7 913 aa14.14□□□□□ -0.15
HMGCS1-202ENST00000433297 GDPD2Q9HCC8 539 aa14.14□□□□□ -0.15
HMGCS1-202ENST00000433297 ZDHHC9Q9Y397 364 aa14.14□□□□□ -0.15
HMGCS1-202ENST00000433297 CWC22Q9HCG8 908 aaKnown RBP14.14□□□□□ -0.15
HMGCS1-202ENST00000433297 CD109Q6YHK3 1445 aa14.14□□□□□ -0.15
HMGCS1-202ENST00000433297 MCM5P33992 734 aa14.13□□□□□ -0.15
HMGCS1-202ENST00000433297 PLEKHM2Q8IWE5 1019 aa14.13□□□□□ -0.15
HMGCS1-202ENST00000433297 TSPYL6Q8N831 410 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms