RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 CASQ1P31415 396 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 RPGRIP1LQ68CZ1 1315 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 PPFIA3O75145 1194 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 LIG1P18858 919 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 MICALL1Q8N3F8 863 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 FAM117AQ9C073 453 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 CXorf56Q9H5V9 222 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 HDAC9Q9UKV0 1011 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 DDX49Q9Y6V7 483 aaKnown RBP6.53□□□□□ -1.36
PTPN4-203ENST00000430976 NAT2P11245 290 aa6.53□□□□□ -1.36
PTPN4-203ENST00000430976 SH3BGRP55822 239 aaPredicted RBP6.53□□□□□ -1.36
PTPN4-203ENST00000430976 DNAJC21Q5F1R6 531 aaKnown RBP6.53□□□□□ -1.36
PTPN4-203ENST00000430976 UHMK1Q8TAS1 419 aaKnown RBP6.53□□□□□ -1.36
PTPN4-203ENST00000430976 WASHC2AQ641Q2 1341 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 ABCD1P33897 745 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 PPP1R15AO75807 674 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-203ENST00000430976 CHAF1AQ13111 956 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-203ENST00000430976 MTA1Q13330 715 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 TOMM20Q15388 145 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 NFKBIBQ15653 356 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 DZIP1Q86YF9 867 aaKnown RBP6.52□□□□□ -1.37
PTPN4-203ENST00000430976 HS6ST3Q8IZP7 471 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 DNAI2Q9GZS0 605 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 hCG_2014768A0A024R1R8 64 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 PAX7P23759 505 aa6.52□□□□□ -1.37
PTPN4-203ENST00000430976 WDR75Q8IWA0 830 aaKnown RBP6.52□□□□□ -1.37
PTPN4-203ENST00000430976 C1orf131Q8NDD1 294 aaKnown RBP6.51□□□□□ -1.37
PTPN4-203ENST00000430976 NBPF3Q9H094 633 aa6.51□□□□□ -1.37
PTPN4-203ENST00000430976 YY1AP1Q9H869 796 aa6.51□□□□□ -1.37
PTPN4-203ENST00000430976 NAT1P18440 290 aa6.51□□□□□ -1.37
PTPN4-203ENST00000430976 RRM1P23921 792 aa6.51□□□□□ -1.37
PTPN4-203ENST00000430976 CCDC146Q8IYE0 955 aa6.51□□□□□ -1.37
PTPN4-203ENST00000430976 ERCC3P19447 782 aa6.51□□□□□ -1.37
PTPN4-203ENST00000430976 TRIM29Q14134 588 aa6.51□□□□□ -1.37
PTPN4-203ENST00000430976 DEF6Q9H4E7 631 aa6.51□□□□□ -1.37
PTPN4-203ENST00000430976 R3HCC1Q9Y3T6 440 aaKnown RBP6.51□□□□□ -1.37
PTPN4-203ENST00000430976 PUS10Q3MIT2 529 aaKnown RBP6.5□□□□□ -1.37
PTPN4-203ENST00000430976 HELBQ8NG08 1087 aaPredicted RBP6.5□□□□□ -1.37
PTPN4-203ENST00000430976 CCDC47Q96A33 483 aaKnown RBP6.5□□□□□ -1.37
PTPN4-203ENST00000430976 TRIM11Q96F44 468 aa6.5□□□□□ -1.37
PTPN4-203ENST00000430976 ECEL1O95672 775 aa6.5□□□□□ -1.37
PTPN4-203ENST00000430976 GAS2L2Q8NHY3 880 aa6.5□□□□□ -1.37
PTPN4-203ENST00000430976 NEUROD6Q96NK8 337 aa6.5□□□□□ -1.37
PTPN4-203ENST00000430976 KIF3AQ9Y496 699 aa6.5□□□□□ -1.37
PTPN4-203ENST00000430976 PARNO95453 639 aaKnown RBP6.5□□□□□ -1.37
PTPN4-203ENST00000430976 MNS1Q8NEH6 495 aa6.5□□□□□ -1.37
PTPN4-203ENST00000430976 MSNP26038 577 aaKnown RBP6.5□□□□□ -1.37
PTPN4-203ENST00000430976 MAP2K2P36507 400 aa6.5□□□□□ -1.37
PTPN4-203ENST00000430976 RABL2AQ9UBK7 228 aaPredicted RBP6.5□□□□□ -1.37
PTPN4-203ENST00000430976 NUB1Q9Y5A7 615 aa6.5□□□□□ -1.37
PTPN4-203ENST00000430976 CLCN1P35523 988 aa6.49□□□□□ -1.37
PTPN4-203ENST00000430976 SLC4A8Q2Y0W8 1093 aa6.49□□□□□ -1.37
PTPN4-203ENST00000430976 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.49□□□□□ -1.37
PTPN4-203ENST00000430976 FLCNQ8NFG4 579 aa6.49□□□□□ -1.37
PTPN4-203ENST00000430976 MRRFQ96E11 262 aaKnown RBP6.49□□□□□ -1.37
PTPN4-203ENST00000430976 KLF15Q9UIH9 416 aa6.49□□□□□ -1.37
PTPN4-203ENST00000430976 SRPK2P78362 688 aaKnown RBP6.49□□□□□ -1.37
PTPN4-203ENST00000430976 ZHX3Q9H4I2 956 aa6.49□□□□□ -1.37
PTPN4-203ENST00000430976 PPP4R2Q9NY27 417 aa6.49□□□□□ -1.37
PTPN4-203ENST00000430976 FBXO9Q9UK97 447 aaPredicted RBP6.49□□□□□ -1.37
PTPN4-203ENST00000430976 XBP1P17861 261 aa6.49□□□□□ -1.37
PTPN4-203ENST00000430976 NCAPGQ9BPX3 1015 aa6.49□□□□□ -1.37
PTPN4-203ENST00000430976 SHTN1A0MZ66 631 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 HNRNPUQ00839 825 aaKnown RBP eCLIP6.48□□□□□ -1.37
PTPN4-203ENST00000430976 PSMD2Q13200 908 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 HNRNPUL2Q1KMD3 747 aaKnown RBP6.48□□□□□ -1.37
PTPN4-203ENST00000430976 CENPOQ9BU64 300 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 UBAP1Q9NZ09 502 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 IPO5O00410 1097 aaKnown RBP6.48□□□□□ -1.37
PTPN4-203ENST00000430976 HMMRO75330 724 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 SLMAPQ14BN4 828 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 DRC1Q96MC2 740 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 MRGBPQ9NV56 204 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 MAP3K20Q9NYL2 800 aaKnown RBP6.48□□□□□ -1.37
PTPN4-203ENST00000430976 C9orf131Q5VYM1 1079 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 FMNL3Q8IVF7 1028 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 MAGEC2Q9UBF1 373 aaPredicted RBP6.48□□□□□ -1.37
PTPN4-203ENST00000430976 RSPH14Q9UHP6 348 aa6.48□□□□□ -1.37
PTPN4-203ENST00000430976 C11orf96Q7Z7L8 435 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 ZC3H15Q8WU90 426 aaKnown RBP6.47□□□□□ -1.37
PTPN4-203ENST00000430976 C22orf23Q9BZE7 217 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 CHCHD3Q9NX63 227 aaKnown RBP6.47□□□□□ -1.37
PTPN4-203ENST00000430976 IVNS1ABPQ9Y6Y0 642 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 GPS2Q13227 327 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 C10orf62Q5T681 223 aaPredicted RBP6.47□□□□□ -1.37
PTPN4-203ENST00000430976 CHCHD4Q8N4Q1 142 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 ITFG2Q969R8 447 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 FMNL2Q96PY5 1086 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 TRAIPQ9BWF2 469 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 TSPY2A6NKD2 308 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 NBPF7P0C2Y1 421 aaPredicted RBP6.47□□□□□ -1.37
PTPN4-203ENST00000430976 TSPY3P0CV98 308 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 TSPY8P0CW00 308 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 TSPY1Q01534 308 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 KRI1Q8N9T8 703 aaKnown RBP6.47□□□□□ -1.37
PTPN4-203ENST00000430976 SETDB1Q15047 1291 aa6.47□□□□□ -1.37
PTPN4-203ENST00000430976 CCDC92Q53HC0 331 aaPredicted RBP6.47□□□□□ -1.37
PTPN4-203ENST00000430976 KIF5CO60282 957 aa6.46□□□□□ -1.37
PTPN4-203ENST00000430976 FRAT2O75474 233 aaPredicted RBP6.46□□□□□ -1.37
PTPN4-203ENST00000430976 TSPY4P0CV99 314 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms