RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 VARSP26640 1264 aaKnown RBP12.66□□□□□ -0.38
LINC01040-201ENST00000425048 CFAP99D6REC4 459 aa12.65□□□□□ -0.38
LINC01040-201ENST00000425048 PDE4DQ08499 809 aa12.65□□□□□ -0.38
LINC01040-201ENST00000425048 CAPN5O15484 640 aaPredicted RBP12.64□□□□□ -0.39
LINC01040-201ENST00000425048 MPNDQ8N594 471 aa12.63□□□□□ -0.39
LINC01040-201ENST00000425048 NFX1Q12986 1120 aaKnown RBP12.62□□□□□ -0.39
LINC01040-201ENST00000425048 CSPP1Q1MSJ5 1256 aa12.62□□□□□ -0.39
LINC01040-201ENST00000425048 CABLES1Q8TDN4 633 aa12.61□□□□□ -0.39
LINC01040-201ENST00000425048 SLC24A3Q9HC58 644 aa12.6□□□□□ -0.39
LINC01040-201ENST00000425048 NUTM2BA6NNL0 878 aaPredicted RBP12.59□□□□□ -0.39
LINC01040-201ENST00000425048 NUTM2EB1AL46 878 aaPredicted RBP12.59□□□□□ -0.39
LINC01040-201ENST00000425048 TERTO14746 1132 aaKnown RBP12.59□□□□□ -0.39
LINC01040-201ENST00000425048 TUSC1Q2TAM9 212 aa12.59□□□□□ -0.39
LINC01040-201ENST00000425048 NUTM2DQ5VT03 806 aaPredicted RBP12.59□□□□□ -0.39
LINC01040-201ENST00000425048 MYSM1Q5VVJ2 828 aa12.59□□□□□ -0.39
LINC01040-201ENST00000425048 NUTM2AQ8IVF1 878 aaPredicted RBP12.59□□□□□ -0.39
LINC01040-201ENST00000425048 TLL2Q9Y6L7 1015 aa12.59□□□□□ -0.39
LINC01040-201ENST00000425048 FAM174AQ8TBP5 190 aa12.58□□□□□ -0.4
LINC01040-201ENST00000425048 F12P00748 615 aaPredicted RBP12.57□□□□□ -0.4
LINC01040-201ENST00000425048 TRIM46Q7Z4K8 759 aa12.57□□□□□ -0.4
LINC01040-201ENST00000425048 MAP10Q9P2G4 905 aa12.57□□□□□ -0.4
LINC01040-201ENST00000425048 LIMD1Q9UGP4 676 aa12.57□□□□□ -0.4
LINC01040-201ENST00000425048 TSC1Q92574 1164 aa12.56□□□□□ -0.4
LINC01040-201ENST00000425048 BMP1P13497 986 aa12.55□□□□□ -0.4
LINC01040-201ENST00000425048 NNTQ13423 1086 aa12.55□□□□□ -0.4
LINC01040-201ENST00000425048 PER1O15534 1290 aaPredicted RBP12.54□□□□□ -0.4
LINC01040-201ENST00000425048 LILRB3O75022 631 aa12.54□□□□□ -0.4
LINC01040-201ENST00000425048 QPCTQ16769 361 aa12.54□□□□□ -0.4
LINC01040-201ENST00000425048 FOXJ1Q92949 421 aa12.54□□□□□ -0.4
LINC01040-201ENST00000425048 RSPH6AQ9H0K4 717 aa12.53□□□□□ -0.4
LINC01040-201ENST00000425048 WIPF1O43516 503 aa12.52□□□□□ -0.41
LINC01040-201ENST00000425048 AGERQ15109 404 aa12.52□□□□□ -0.41
LINC01040-201ENST00000425048 CDK15Q96Q40 435 aa12.52□□□□□ -0.41
LINC01040-201ENST00000425048 ARID5BQ14865 1188 aa12.51□□□□□ -0.41
LINC01040-201ENST00000425048 BPHLQ86WA6 291 aaPredicted RBP12.51□□□□□ -0.41
LINC01040-201ENST00000425048 ARMC2Q8NEN0 867 aa12.51□□□□□ -0.41
LINC01040-201ENST00000425048 ADH1CP00326 375 aa12.5□□□□□ -0.41
LINC01040-201ENST00000425048 WDR4P57081 412 aaKnown RBP12.5□□□□□ -0.41
LINC01040-201ENST00000425048 SLC16A10Q8TF71 515 aa12.5□□□□□ -0.41
LINC01040-201ENST00000425048 INSM1Q01101 510 aaPredicted RBP12.49□□□□□ -0.41
LINC01040-201ENST00000425048 HELBQ8NG08 1087 aaPredicted RBP12.49□□□□□ -0.41
LINC01040-201ENST00000425048 ZFP42Q96MM3 310 aa12.49□□□□□ -0.41
LINC01040-201ENST00000425048 NXF1Q9UBU9 619 aaKnown RBP12.49□□□□□ -0.41
LINC01040-201ENST00000425048 TIMP2P16035 220 aa12.48□□□□□ -0.41
LINC01040-201ENST00000425048 CLK2P49760 499 aaKnown RBP12.48□□□□□ -0.41
LINC01040-201ENST00000425048 SCARF1Q14162 830 aa12.48□□□□□ -0.41
LINC01040-201ENST00000425048 RTL5Q5HYW3 569 aaPredicted RBP12.48□□□□□ -0.41
LINC01040-201ENST00000425048 NR5A1Q13285 461 aa12.47□□□□□ -0.41
LINC01040-201ENST00000425048 POLR3EQ9NVU0 708 aa12.47□□□□□ -0.41
LINC01040-201ENST00000425048 C4orf48Q5BLP8 95 aa12.46□□□□□ -0.41
LINC01040-201ENST00000425048 MRPL14Q6P1L8 145 aaKnown RBP12.46□□□□□ -0.41
LINC01040-201ENST00000425048 KLF16Q9BXK1 252 aaPredicted RBP12.46□□□□□ -0.41
LINC01040-201ENST00000425048 NPAS3Q8IXF0 933 aa12.45□□□□□ -0.42
LINC01040-201ENST00000425048 LCE2CQ5TA81 110 aa12.44□□□□□ -0.42
LINC01040-201ENST00000425048 GRM5P41594 1212 aa12.43□□□□□ -0.42
LINC01040-201ENST00000425048 NBPF14Q5TI25 921 aa12.43□□□□□ -0.42
LINC01040-201ENST00000425048 STK17AQ9UEE5 414 aa12.43□□□□□ -0.42
LINC01040-201ENST00000425048 PURBQ96QR8 312 aaKnown RBP12.42□□□□□ -0.42
LINC01040-201ENST00000425048 ZIC2O95409 532 aaPredicted RBP12.41□□□□□ -0.42
LINC01040-201ENST00000425048 SH3RF1Q7Z6J0 888 aa12.4□□□□□ -0.42
LINC01040-201ENST00000425048 IRF7Q92985 503 aa12.39□□□□□ -0.43
LINC01040-201ENST00000425048 ITPKCQ96DU7 683 aa12.39□□□□□ -0.43
LINC01040-201ENST00000425048 C1QTNF2Q9BXJ5 285 aa12.39□□□□□ -0.43
LINC01040-201ENST00000425048 ZFAND3Q9H8U3 227 aa12.39□□□□□ -0.43
LINC01040-201ENST00000425048 NR3C2P08235 984 aa12.38□□□□□ -0.43
LINC01040-201ENST00000425048 CTDSPL2Q05D32 466 aa12.38□□□□□ -0.43
LINC01040-201ENST00000425048 SH3BP5LQ7L8J4 393 aa12.38□□□□□ -0.43
LINC01040-201ENST00000425048 GPKOWQ92917 476 aaPredicted RBP eCLIP12.38□□□□□ -0.43
LINC01040-201ENST00000425048 SKIV2LQ15477 1246 aaKnown RBP12.37□□□□□ -0.43
LINC01040-201ENST00000425048 MAGEB6P1A0A0J9YX57 407 aa12.36□□□□□ -0.43
LINC01040-201ENST00000425048 VASH1Q7L8A9 365 aaPredicted RBP12.36□□□□□ -0.43
LINC01040-201ENST00000425048 TRMT44Q8IYL2 757 aaKnown RBP12.36□□□□□ -0.43
LINC01040-201ENST00000425048 MAP4K5Q9Y4K4 846 aa12.36□□□□□ -0.43
LINC01040-201ENST00000425048 H3BM21 787 aa12.35□□□□□ -0.43
LINC01040-201ENST00000425048 VEGFBP49765 207 aa12.35□□□□□ -0.43
LINC01040-201ENST00000425048 UPP2O95045 317 aa12.34□□□□□ -0.43
LINC01040-201ENST00000425048 GMPRP36959 345 aa12.34□□□□□ -0.43
LINC01040-201ENST00000425048 ATP1B4Q9UN42 357 aaPredicted RBP12.34□□□□□ -0.43
LINC01040-201ENST00000425048 C6orf118Q5T5N4 469 aa12.33□□□□□ -0.44
LINC01040-201ENST00000425048 DDRGK1Q96HY6 314 aa12.32□□□□□ -0.44
LINC01040-201ENST00000425048 CARD14Q9BXL6 1004 aa12.32□□□□□ -0.44
LINC01040-201ENST00000425048 KDM4CQ9H3R0 1056 aa12.32□□□□□ -0.44
LINC01040-201ENST00000425048 FSHRP23945 695 aa12.31□□□□□ -0.44
LINC01040-201ENST00000425048 SH3D19Q5HYK7 790 aa12.31□□□□□ -0.44
LINC01040-201ENST00000425048 PDXDC2PQ6P474 469 aa12.31□□□□□ -0.44
LINC01040-201ENST00000425048 EMILIN1Q9Y6C2 1016 aa12.31□□□□□ -0.44
LINC01040-201ENST00000425048 SOBPA7XYQ1 873 aa12.3□□□□□ -0.44
LINC01040-201ENST00000425048 MAN1A2O60476 641 aa12.3□□□□□ -0.44
LINC01040-201ENST00000425048 BMP2P12643 396 aa12.3□□□□□ -0.44
LINC01040-201ENST00000425048 PROCA1Q8NCQ7 364 aaPredicted RBP12.3□□□□□ -0.44
LINC01040-201ENST00000425048 GPBP1L1Q9HC44 474 aaPredicted RBP12.3□□□□□ -0.44
LINC01040-201ENST00000425048 ERFEQ4G0M1 354 aa12.29□□□□□ -0.44
LINC01040-201ENST00000425048 CCDC116Q8IYX3 515 aa12.29□□□□□ -0.44
LINC01040-201ENST00000425048 LRRN4Q8WUT4 740 aa12.29□□□□□ -0.44
LINC01040-201ENST00000425048 FAM117AQ9C073 453 aa12.29□□□□□ -0.44
LINC01040-201ENST00000425048 FKBPLQ9UIM3 349 aa12.29□□□□□ -0.44
LINC01040-201ENST00000425048 PPP2R2DQ66LE6 453 aa12.28□□□□□ -0.44
LINC01040-201ENST00000425048 LINC00528Q8N1L1 170 aa12.28□□□□□ -0.44
LINC01040-201ENST00000425048 MEIOBQ8N635 442 aa12.28□□□□□ -0.44
LINC01040-201ENST00000425048 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms