RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 SPATA31A3Q5VYP0 1347 aa16.73■□□□□ 0.27
LINC00539-202ENST00000423575 EDC4Q6P2E9 1401 aaKnown RBP16.73■□□□□ 0.27
LINC00539-202ENST00000423575 ZNF316A6NFI3 1004 aaPredicted RBP16.73■□□□□ 0.27
LINC00539-202ENST00000423575 PANK3Q9H999 370 aa16.73■□□□□ 0.27
LINC00539-202ENST00000423575 BRD4O60885 1362 aaPredicted RBP16.73■□□□□ 0.27
LINC00539-202ENST00000423575 TTC21BQ7Z4L5 1316 aa16.72■□□□□ 0.27
LINC00539-202ENST00000423575 CARD14Q9BXL6 1004 aa16.72■□□□□ 0.27
LINC00539-202ENST00000423575 NSD3Q9BZ95 1437 aa16.71■□□□□ 0.27
LINC00539-202ENST00000423575 PAK3O75914 559 aaPredicted RBP16.71■□□□□ 0.27
LINC00539-202ENST00000423575 LRRC59Q96AG4 307 aaKnown RBP16.71■□□□□ 0.27
LINC00539-202ENST00000423575 PNPLA6Q8IY17 1366 aa16.7■□□□□ 0.26
LINC00539-202ENST00000423575 ALS2Q96Q42 1657 aa16.69■□□□□ 0.26
LINC00539-202ENST00000423575 ILDR1Q86SU0 546 aaPredicted RBP16.69■□□□□ 0.26
LINC00539-202ENST00000423575 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.69■□□□□ 0.26
LINC00539-202ENST00000423575 TTC21AQ8NDW8 1320 aa16.69■□□□□ 0.26
LINC00539-202ENST00000423575 ARHGEF10O15013 1369 aa16.68■□□□□ 0.26
LINC00539-202ENST00000423575 JCADQ9P266 1359 aa16.68■□□□□ 0.26
LINC00539-202ENST00000423575 LMOD2Q6P5Q4 547 aa16.68■□□□□ 0.26
LINC00539-202ENST00000423575 NME9Q86XW9 330 aa16.68■□□□□ 0.26
LINC00539-202ENST00000423575 PIK3C2AO00443 1686 aa16.67■□□□□ 0.26
LINC00539-202ENST00000423575 NUTM2GQ5VZR2 741 aa16.67■□□□□ 0.26
LINC00539-202ENST00000423575 ABTB2Q8N961 1025 aa16.66■□□□□ 0.26
LINC00539-202ENST00000423575 MED1Q15648 1581 aaPredicted RBP16.65■□□□□ 0.26
LINC00539-202ENST00000423575 DDX10Q13206 875 aaKnown RBP16.65■□□□□ 0.26
LINC00539-202ENST00000423575 ZRANB1Q9UGI0 708 aa16.65■□□□□ 0.26
LINC00539-202ENST00000423575 SHPRHQ149N8 1683 aa16.65■□□□□ 0.26
LINC00539-202ENST00000423575 COL22A1Q8NFW1 1626 aaPredicted RBP16.64■□□□□ 0.25
LINC00539-202ENST00000423575 PER1O15534 1290 aaPredicted RBP16.64■□□□□ 0.25
LINC00539-202ENST00000423575 USP19O94966 1318 aa16.64■□□□□ 0.25
LINC00539-202ENST00000423575 USP31Q70CQ4 1352 aa16.64■□□□□ 0.25
LINC00539-202ENST00000423575 OVOS2A0A0J9YW53 1432 aa16.63■□□□□ 0.25
LINC00539-202ENST00000423575 OVOS2Q6IE36 1432 aa16.63■□□□□ 0.25
LINC00539-202ENST00000423575 FYB1O15117 783 aa16.63■□□□□ 0.25
LINC00539-202ENST00000423575 PLEKHG5O94827 1062 aa16.63■□□□□ 0.25
LINC00539-202ENST00000423575 CGNL1Q0VF96 1302 aa16.63■□□□□ 0.25
LINC00539-202ENST00000423575 NLRP6P59044 892 aa16.62■□□□□ 0.25
LINC00539-202ENST00000423575 CABLES1Q8TDN4 633 aa16.62■□□□□ 0.25
LINC00539-202ENST00000423575 GGNBP2Q9H3C7 697 aa16.62■□□□□ 0.25
LINC00539-202ENST00000423575 KNSTRNQ9Y448 316 aa16.62■□□□□ 0.25
LINC00539-202ENST00000423575 AMER1Q5JTC6 1135 aaPredicted RBP16.61■□□□□ 0.25
LINC00539-202ENST00000423575 NLRP13Q86W25 1043 aa16.61■□□□□ 0.25
LINC00539-202ENST00000423575 USP54Q70EL1 1684 aa16.6■□□□□ 0.25
LINC00539-202ENST00000423575 MARF1Q9Y4F3 1742 aaKnown RBP16.6■□□□□ 0.25
LINC00539-202ENST00000423575 SPATA31A6Q5VVP1 1343 aa16.6■□□□□ 0.25
LINC00539-202ENST00000423575 SLIT3O75094 1523 aa16.6■□□□□ 0.25
LINC00539-202ENST00000423575 LRP6O75581 1613 aa16.59■□□□□ 0.25
LINC00539-202ENST00000423575 CRYBG1Q9Y4K1 1723 aa16.59■□□□□ 0.25
LINC00539-202ENST00000423575 ABCA3Q99758 1704 aa16.59■□□□□ 0.25
LINC00539-202ENST00000423575 KIF20BQ96Q89 1820 aa16.59■□□□□ 0.25
LINC00539-202ENST00000423575 NUTM2BA6NNL0 878 aaPredicted RBP16.58■□□□□ 0.24
LINC00539-202ENST00000423575 NUTM2EB1AL46 878 aaPredicted RBP16.58■□□□□ 0.24
LINC00539-202ENST00000423575 NUTM2AQ8IVF1 878 aaPredicted RBP16.58■□□□□ 0.24
LINC00539-202ENST00000423575 COG3Q96JB2 828 aa16.58■□□□□ 0.24
LINC00539-202ENST00000423575 NSD2O96028 1365 aa16.58■□□□□ 0.24
LINC00539-202ENST00000423575 PHRF1Q9P1Y6 1649 aaKnown RBP16.58■□□□□ 0.24
LINC00539-202ENST00000423575 NPC1L1Q9UHC9 1359 aa16.57■□□□□ 0.24
LINC00539-202ENST00000423575 NFAT5O94916 1531 aa16.56■□□□□ 0.24
LINC00539-202ENST00000423575 GCP02774 474 aa16.56■□□□□ 0.24
LINC00539-202ENST00000423575 SOX12O15370 315 aa16.55■□□□□ 0.24
LINC00539-202ENST00000423575 HAP1P54257 671 aaPredicted RBP16.55■□□□□ 0.24
LINC00539-202ENST00000423575 CC2D1BQ5T0F9 858 aaKnown RBP16.55■□□□□ 0.24
LINC00539-202ENST00000423575 ADAMTS2O95450 1211 aa16.54■□□□□ 0.24
LINC00539-202ENST00000423575 CNGB1Q14028 1251 aaPredicted RBP16.53■□□□□ 0.24
LINC00539-202ENST00000423575 KCNH5Q8NCM2 988 aa16.53■□□□□ 0.24
LINC00539-202ENST00000423575 KIAA0232Q92628 1395 aa16.52■□□□□ 0.24
LINC00539-202ENST00000423575 ZC3H6P61129 1189 aaKnown RBP16.52■□□□□ 0.24
LINC00539-202ENST00000423575 ANKRD26Q9UPS8 1709 aa16.52■□□□□ 0.24
LINC00539-202ENST00000423575 CPDO75976 1380 aa16.51■□□□□ 0.23
LINC00539-202ENST00000423575 FBLN1P23142 703 aa16.51■□□□□ 0.23
LINC00539-202ENST00000423575 MORC1Q86VD1 984 aa16.51■□□□□ 0.23
LINC00539-202ENST00000423575 TNNT2P45379 298 aaPredicted RBP16.5■□□□□ 0.23
LINC00539-202ENST00000423575 ARHGEF25Q86VW2 580 aa16.49■□□□□ 0.23
LINC00539-202ENST00000423575 PRDM11Q9NQV5 511 aa16.49■□□□□ 0.23
LINC00539-202ENST00000423575 AATKQ6ZMQ8 1374 aa16.49■□□□□ 0.23
LINC00539-202ENST00000423575 MAP3K19Q56UN5 1328 aa16.48■□□□□ 0.23
LINC00539-202ENST00000423575 ZBTB7CA1YPR0 619 aa16.48■□□□□ 0.23
LINC00539-202ENST00000423575 RRS1Q15050 365 aaKnown RBP16.48■□□□□ 0.23
LINC00539-202ENST00000423575 CHRNA2Q15822 529 aa16.48■□□□□ 0.23
LINC00539-202ENST00000423575 MEX3CQ5U5Q3 659 aaKnown RBP16.48■□□□□ 0.23
LINC00539-202ENST00000423575 FAM83GA6ND36 823 aa16.47■□□□□ 0.23
LINC00539-202ENST00000423575 C8orf37Q96NL8 207 aa16.47■□□□□ 0.23
LINC00539-202ENST00000423575 PARD3Q8TEW0 1356 aa16.47■□□□□ 0.23
LINC00539-202ENST00000423575 POLKQ9UBT6 870 aa16.45■□□□□ 0.22
LINC00539-202ENST00000423575 EMILIN1Q9Y6C2 1016 aa16.45■□□□□ 0.22
LINC00539-202ENST00000423575 SLIT2O94813 1529 aa16.45■□□□□ 0.22
LINC00539-202ENST00000423575 SMG6Q86US8 1419 aaKnown RBP16.45■□□□□ 0.22
LINC00539-202ENST00000423575 LMO7Q8WWI1 1683 aa16.44■□□□□ 0.22
LINC00539-202ENST00000423575 ABCC6O95255 1503 aa16.44■□□□□ 0.22
LINC00539-202ENST00000423575 COL14A1Q05707 1796 aaKnown RBP16.43■□□□□ 0.22
LINC00539-202ENST00000423575 RTL1A6NKG5 1358 aa16.43■□□□□ 0.22
LINC00539-202ENST00000423575 PEAK1Q9H792 1746 aa16.43■□□□□ 0.22
LINC00539-202ENST00000423575 NGLY1Q96IV0 654 aa16.43■□□□□ 0.22
LINC00539-202ENST00000423575 COL18A1P39060 1754 aa16.43■□□□□ 0.22
LINC00539-202ENST00000423575 CAMTA1Q9Y6Y1 1673 aa16.43■□□□□ 0.22
LINC00539-202ENST00000423575 AFF2P51816 1311 aa16.43■□□□□ 0.22
LINC00539-202ENST00000423575 LTN1O94822 1766 aa16.42■□□□□ 0.22
LINC00539-202ENST00000423575 HOXC9P31274 260 aa16.42■□□□□ 0.22
LINC00539-202ENST00000423575 AMPHP49418 695 aa16.42■□□□□ 0.22
LINC00539-202ENST00000423575 FNBP4Q8N3X1 1017 aaPredicted RBP16.42■□□□□ 0.22
LINC00539-202ENST00000423575 BTG4Q9NY30 223 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms