RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 TNS3Q68CZ2 1445 aa15.51■□□□□ 0.07
USP49-204ENST00000423567 HAP1P54257 671 aaPredicted RBP15.5■□□□□ 0.07
USP49-204ENST00000423567 ARHGEF10O15013 1369 aa15.49■□□□□ 0.07
USP49-204ENST00000423567 RGPD8O14715 1765 aaPredicted RBP15.49■□□□□ 0.07
USP49-204ENST00000423567 NGLY1Q96IV0 654 aa15.49■□□□□ 0.07
USP49-204ENST00000423567 CABP2Q9NPB3 220 aa15.49■□□□□ 0.07
USP49-204ENST00000423567 AFF2P51816 1311 aa15.48■□□□□ 0.07
USP49-204ENST00000423567 ABCB7O75027 752 aa15.48■□□□□ 0.07
USP49-204ENST00000423567 QRICH2Q9H0J4 1663 aa15.48■□□□□ 0.07
USP49-204ENST00000423567 COL22A1Q8NFW1 1626 aaPredicted RBP15.47■□□□□ 0.07
USP49-204ENST00000423567 PAK3O75914 559 aaPredicted RBP15.47■□□□□ 0.07
USP49-204ENST00000423567 ITSN1Q15811 1721 aa15.47■□□□□ 0.07
USP49-204ENST00000423567 POTEAQ6S8J7 498 aa15.47■□□□□ 0.07
USP49-204ENST00000423567 PLEKHG3A1L390 1219 aa15.46■□□□□ 0.07
USP49-204ENST00000423567 ACEP12821 1306 aa15.45■□□□□ 0.06
USP49-204ENST00000423567 PPIP5K1Q6PFW1 1433 aa15.45■□□□□ 0.06
USP49-204ENST00000423567 SOCS7O14512 581 aa15.45■□□□□ 0.06
USP49-204ENST00000423567 PLEKHG5O94827 1062 aa15.45■□□□□ 0.06
USP49-204ENST00000423567 POLR3AO14802 1390 aaPredicted RBP15.44■□□□□ 0.06
USP49-204ENST00000423567 SBNO2Q9Y2G9 1366 aa15.44■□□□□ 0.06
USP49-204ENST00000423567 CABP1Q9NZU7 370 aa15.43■□□□□ 0.06
USP49-204ENST00000423567 ATAD2Q6PL18 1390 aa15.42■□□□□ 0.06
USP49-204ENST00000423567 SLC24A1O60721 1099 aa15.42■□□□□ 0.06
USP49-204ENST00000423567 CABLES1Q8TDN4 633 aa15.42■□□□□ 0.06
USP49-204ENST00000423567 USP21Q9UK80 565 aa15.42■□□□□ 0.06
USP49-204ENST00000423567 ATF5Q9Y2D1 282 aaPredicted RBP15.42■□□□□ 0.06
USP49-204ENST00000423567 TOPAZ1Q8N9V7 1692 aa15.41■□□□□ 0.06
USP49-204ENST00000423567 RXRBP28702 533 aa15.41■□□□□ 0.06
USP49-204ENST00000423567 QTRT2Q9H974 415 aaKnown RBP15.41■□□□□ 0.06
USP49-204ENST00000423567 FNBP4Q8N3X1 1017 aaPredicted RBP15.4■□□□□ 0.06
USP49-204ENST00000423567 BRD4O60885 1362 aaPredicted RBP15.39■□□□□ 0.05
USP49-204ENST00000423567 ST20-MTHFSA0A0A6YYL1 179 aa15.39■□□□□ 0.05
USP49-204ENST00000423567 TRPC5Q9UL62 973 aaPredicted RBP15.39■□□□□ 0.05
USP49-204ENST00000423567 TRPM3Q9HCF6 1732 aaPredicted RBP15.39■□□□□ 0.05
USP49-204ENST00000423567 RBM6P78332 1123 aaKnown RBP15.38■□□□□ 0.05
USP49-204ENST00000423567 ABTB2Q8N961 1025 aa15.38■□□□□ 0.05
USP49-204ENST00000423567 USP47Q96K76 1375 aa15.37■□□□□ 0.05
USP49-204ENST00000423567 ZNF692Q9BU19 519 aaPredicted RBP15.37■□□□□ 0.05
USP49-204ENST00000423567 NUTM2GQ5VZR2 741 aa15.36■□□□□ 0.05
USP49-204ENST00000423567 TMC1Q8TDI8 760 aa15.36■□□□□ 0.05
USP49-204ENST00000423567 ALS2Q96Q42 1657 aa15.35■□□□□ 0.05
USP49-204ENST00000423567 NLRP13Q86W25 1043 aa15.35■□□□□ 0.05
USP49-204ENST00000423567 UNC5CLQ8IV45 518 aa15.35■□□□□ 0.05
USP49-204ENST00000423567 PUS7Q96PZ0 661 aaKnown RBP15.35■□□□□ 0.05
USP49-204ENST00000423567 USP6P35125 1406 aa15.34■□□□□ 0.05
USP49-204ENST00000423567 TMF1P82094 1093 aa15.34■□□□□ 0.05
USP49-204ENST00000423567 TESK2Q96S53 571 aa15.34■□□□□ 0.05
USP49-204ENST00000423567 HDGFL2Q7Z4V5 671 aaPredicted RBP15.33■□□□□ 0.04
USP49-204ENST00000423567 PRDM11Q9NQV5 511 aa15.33■□□□□ 0.04
USP49-204ENST00000423567 MARF1Q9Y4F3 1742 aaKnown RBP15.33■□□□□ 0.04
USP49-204ENST00000423567 ATRNO75882 1429 aa15.33■□□□□ 0.04
USP49-204ENST00000423567 BCL9LQ86UU0 1499 aa15.33■□□□□ 0.04
USP49-204ENST00000423567 SLIT2O94813 1529 aa15.33■□□□□ 0.04
USP49-204ENST00000423567 NLRP6P59044 892 aa15.32■□□□□ 0.04
USP49-204ENST00000423567 CDCA8Q53HL2 280 aa15.32■□□□□ 0.04
USP49-204ENST00000423567 TERF2IPQ9NYB0 399 aa15.32■□□□□ 0.04
USP49-204ENST00000423567 KTN1Q86UP2 1357 aaKnown RBP15.32■□□□□ 0.04
USP49-204ENST00000423567 CDK12Q9NYV4 1490 aaPredicted RBP15.32■□□□□ 0.04
USP49-204ENST00000423567 FAM83GA6ND36 823 aa15.31■□□□□ 0.04
USP49-204ENST00000423567 ATXN8OSP0DMR3 200 aa15.3■□□□□ 0.04
USP49-204ENST00000423567 POLA2Q14181 598 aa15.3■□□□□ 0.04
USP49-204ENST00000423567 TTC21BQ7Z4L5 1316 aa15.3■□□□□ 0.04
USP49-204ENST00000423567 TTC21AQ8NDW8 1320 aa15.3■□□□□ 0.04
USP49-204ENST00000423567 GJD4Q96KN9 370 aaPredicted RBP15.3■□□□□ 0.04
USP49-204ENST00000423567 ABCA3Q99758 1704 aa15.3■□□□□ 0.04
USP49-204ENST00000423567 NINLQ9Y2I6 1382 aa15.3■□□□□ 0.04
USP49-204ENST00000423567 CCDC9Q9Y3X0 531 aaKnown RBP15.3■□□□□ 0.04
USP49-204ENST00000423567 CPSF1Q10570 1443 aaKnown RBP15.29■□□□□ 0.04
USP49-204ENST00000423567 KIAA0232Q92628 1395 aa15.29■□□□□ 0.04
USP49-204ENST00000423567 USP19O94966 1318 aa15.29■□□□□ 0.04
USP49-204ENST00000423567 ZC3H6P61129 1189 aaKnown RBP15.29■□□□□ 0.04
USP49-204ENST00000423567 SLC12A5Q9H2X9 1139 aa15.29■□□□□ 0.04
USP49-204ENST00000423567 BTG4Q9NY30 223 aa15.29■□□□□ 0.04
USP49-204ENST00000423567 VPS72Q15906 364 aa15.28■□□□□ 0.04
USP49-204ENST00000423567 SSH2Q76I76 1423 aa15.27■□□□□ 0.04
USP49-204ENST00000423567 GCP02774 474 aa15.27■□□□□ 0.04
USP49-204ENST00000423567 EIF4G2P78344 907 aaKnown RBP eCLIP15.27■□□□□ 0.04
USP49-204ENST00000423567 RGS12O14924 1447 aa15.26■□□□□ 0.03
USP49-204ENST00000423567 CHRNA2Q15822 529 aa15.26■□□□□ 0.03
USP49-204ENST00000423567 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.26■□□□□ 0.03
USP49-204ENST00000423567 COL14A1Q05707 1796 aaKnown RBP15.26■□□□□ 0.03
USP49-204ENST00000423567 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.26■□□□□ 0.03
USP49-204ENST00000423567 KCNH5Q8NCM2 988 aa15.25■□□□□ 0.03
USP49-204ENST00000423567 NWD2Q9ULI1 1742 aa15.25■□□□□ 0.03
USP49-204ENST00000423567 CRYBG1Q9Y4K1 1723 aa15.25■□□□□ 0.03
USP49-204ENST00000423567 PLCH1Q4KWH8 1693 aa15.25■□□□□ 0.03
USP49-204ENST00000423567 PHRF1Q9P1Y6 1649 aaKnown RBP15.25■□□□□ 0.03
USP49-204ENST00000423567 A0A1W2PP64 1363 aa15.24■□□□□ 0.03
USP49-204ENST00000423567 CPDO75976 1380 aa15.24■□□□□ 0.03
USP49-204ENST00000423567 ZBTB7CA1YPR0 619 aa15.24■□□□□ 0.03
USP49-204ENST00000423567 EDC4Q6P2E9 1401 aaKnown RBP15.24■□□□□ 0.03
USP49-204ENST00000423567 AKAP12Q02952 1782 aa15.24■□□□□ 0.03
USP49-204ENST00000423567 NRKQ7Z2Y5 1582 aa15.24■□□□□ 0.03
USP49-204ENST00000423567 CD163L1Q9NR16 1453 aa15.23■□□□□ 0.03
USP49-204ENST00000423567 EVA1CP58658 441 aa15.23■□□□□ 0.03
USP49-204ENST00000423567 STRN4Q9NRL3 753 aa15.23■□□□□ 0.03
USP49-204ENST00000423567 A0A0G2JS52 829 aa15.22■□□□□ 0.03
USP49-204ENST00000423567 SOX12O15370 315 aa15.22■□□□□ 0.03
USP49-204ENST00000423567 MYT1Q01538 1121 aa15.22■□□□□ 0.03
USP49-204ENST00000423567 HSPA5P11021 654 aaKnown RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms