RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CHMP4BQ9H444 224 aaKnown RBP10.9□□□□□ -0.67
USP54-203ENST00000418501 ROBO2Q9HCK4 1378 aa10.9□□□□□ -0.67
USP54-203ENST00000418501 PLEKHH1Q9ULM0 1364 aa10.9□□□□□ -0.67
USP54-203ENST00000418501 APAF1O14727 1248 aa10.89□□□□□ -0.67
USP54-203ENST00000418501 CT47B1P0C2W7 299 aaPredicted RBP10.89□□□□□ -0.67
USP54-203ENST00000418501 DMRT2Q9Y5R5 561 aa10.89□□□□□ -0.67
USP54-203ENST00000418501 AATKQ6ZMQ8 1374 aa10.89□□□□□ -0.67
USP54-203ENST00000418501 CHMP4AQ9BY43 222 aa10.88□□□□□ -0.67
USP54-203ENST00000418501 ACEP12821 1306 aa10.88□□□□□ -0.67
USP54-203ENST00000418501 AMPHP49418 695 aa10.88□□□□□ -0.67
USP54-203ENST00000418501 TTC21BQ7Z4L5 1316 aa10.88□□□□□ -0.67
USP54-203ENST00000418501 CCDC27Q2M243 656 aa10.88□□□□□ -0.67
USP54-203ENST00000418501 CCDC136Q96JN2 1154 aa10.88□□□□□ -0.67
USP54-203ENST00000418501 MYOM1P52179 1685 aa10.88□□□□□ -0.67
USP54-203ENST00000418501 CCDC146Q8IYE0 955 aa10.88□□□□□ -0.67
USP54-203ENST00000418501 PAK3O75914 559 aaPredicted RBP10.87□□□□□ -0.67
USP54-203ENST00000418501 PHF8Q9UPP1 1060 aa10.87□□□□□ -0.67
USP54-203ENST00000418501 KCNH5Q8NCM2 988 aa10.87□□□□□ -0.67
USP54-203ENST00000418501 AAMPQ13685 434 aa10.86□□□□□ -0.67
USP54-203ENST00000418501 ADGRB2O60241 1585 aa10.86□□□□□ -0.67
USP54-203ENST00000418501 ADAMTSL3P82987 1691 aa10.86□□□□□ -0.67
USP54-203ENST00000418501 TCP11L2Q8N4U5 519 aa10.86□□□□□ -0.67
USP54-203ENST00000418501 CDC42BPGQ6DT37 1551 aa10.85□□□□□ -0.67
USP54-203ENST00000418501 NUTM2FA1L443 756 aa10.85□□□□□ -0.67
USP54-203ENST00000418501 NEUROD2Q15784 382 aa10.85□□□□□ -0.67
USP54-203ENST00000418501 CPSF1Q10570 1443 aaKnown RBP10.85□□□□□ -0.67
USP54-203ENST00000418501 RRP1P56182 461 aaKnown RBP10.85□□□□□ -0.67
USP54-203ENST00000418501 IL16Q14005 1332 aa10.84□□□□□ -0.67
USP54-203ENST00000418501 NLRP6P59044 892 aa10.84□□□□□ -0.67
USP54-203ENST00000418501 C19orf44Q9H6X5 657 aa10.84□□□□□ -0.67
USP54-203ENST00000418501 ESCO1Q5FWF5 840 aa10.84□□□□□ -0.67
USP54-203ENST00000418501 NME9Q86XW9 330 aa10.84□□□□□ -0.67
USP54-203ENST00000418501 KIF24Q5T7B8 1368 aa10.84□□□□□ -0.67
USP54-203ENST00000418501 IPO8O15397 1037 aaKnown RBP10.84□□□□□ -0.67
USP54-203ENST00000418501 CADPS2Q86UW7 1296 aa10.84□□□□□ -0.67
USP54-203ENST00000418501 SLFN5Q08AF3 891 aa10.83□□□□□ -0.68
USP54-203ENST00000418501 RTF1Q92541 710 aaKnown RBP10.83□□□□□ -0.68
USP54-203ENST00000418501 ZNF142P52746 1687 aaPredicted RBP10.83□□□□□ -0.68
USP54-203ENST00000418501 ABTB2Q8N961 1025 aa10.83□□□□□ -0.68
USP54-203ENST00000418501 ZNF428Q96B54 188 aa10.83□□□□□ -0.68
USP54-203ENST00000418501 NCOA3Q9Y6Q9 1424 aa10.83□□□□□ -0.68
USP54-203ENST00000418501 PMFBP1Q8TBY8 1022 aa10.83□□□□□ -0.68
USP54-203ENST00000418501 NRXN3Q9Y4C0 1643 aa10.82□□□□□ -0.68
USP54-203ENST00000418501 USP6P35125 1406 aa10.82□□□□□ -0.68
USP54-203ENST00000418501 BCL11AQ9H165 835 aa10.82□□□□□ -0.68
USP54-203ENST00000418501 ADGRL3Q9HAR2 1447 aa10.82□□□□□ -0.68
USP54-203ENST00000418501 RIPK4P57078 832 aa10.81□□□□□ -0.68
USP54-203ENST00000418501 GNAI1P63096 354 aa10.81□□□□□ -0.68
USP54-203ENST00000418501 NCKAP5LQ9HCH0 1330 aa10.81□□□□□ -0.68
USP54-203ENST00000418501 MSH6P52701 1360 aa10.81□□□□□ -0.68
USP54-203ENST00000418501 WWC1Q8IX03 1113 aa10.81□□□□□ -0.68
USP54-203ENST00000418501 POLKQ9UBT6 870 aa10.81□□□□□ -0.68
USP54-203ENST00000418501 NKTRP30414 1462 aaKnown RBP10.81□□□□□ -0.68
USP54-203ENST00000418501 GAS2L2Q8NHY3 880 aa10.8□□□□□ -0.68
USP54-203ENST00000418501 CDK12Q9NYV4 1490 aaPredicted RBP10.8□□□□□ -0.68
USP54-203ENST00000418501 LMOD2Q6P5Q4 547 aa10.8□□□□□ -0.68
USP54-203ENST00000418501 PTPRUQ92729 1446 aa10.8□□□□□ -0.68
USP54-203ENST00000418501 ITSN1Q15811 1721 aa10.8□□□□□ -0.68
USP54-203ENST00000418501 NFE2L2Q16236 605 aa10.79□□□□□ -0.68
USP54-203ENST00000418501 PRKAR2BP31323 418 aa10.79□□□□□ -0.68
USP54-203ENST00000418501 TMPOP42166 694 aaKnown RBP10.79□□□□□ -0.68
USP54-203ENST00000418501 FLT4P35916 1363 aa10.79□□□□□ -0.68
USP54-203ENST00000418501 PRR36Q9H6K5 1346 aa10.79□□□□□ -0.68
USP54-203ENST00000418501 USP31Q70CQ4 1352 aa10.79□□□□□ -0.68
USP54-203ENST00000418501 SETD1AO15047 1707 aaKnown RBP10.79□□□□□ -0.68
USP54-203ENST00000418501 SBNO1A3KN83 1393 aa10.78□□□□□ -0.68
USP54-203ENST00000418501 IRX6P78412 446 aaPredicted RBP10.78□□□□□ -0.68
USP54-203ENST00000418501 PNPLA6Q8IY17 1366 aa10.78□□□□□ -0.68
USP54-203ENST00000418501 FTSJ3Q8IY81 847 aaKnown RBP10.78□□□□□ -0.68
USP54-203ENST00000418501 CD163L1Q9NR16 1453 aa10.77□□□□□ -0.69
USP54-203ENST00000418501 RTL1A6NKG5 1358 aa10.77□□□□□ -0.69
USP54-203ENST00000418501 SOX12O15370 315 aa10.77□□□□□ -0.69
USP54-203ENST00000418501 PDE3AQ14432 1141 aa10.77□□□□□ -0.69
USP54-203ENST00000418501 RRP7AQ9Y3A4 280 aaKnown RBP10.77□□□□□ -0.69
USP54-203ENST00000418501 KIF20BQ96Q89 1820 aa10.76□□□□□ -0.69
USP54-203ENST00000418501 RNF123Q5XPI4 1314 aa10.76□□□□□ -0.69
USP54-203ENST00000418501 NPHP3Q7Z494 1330 aa10.76□□□□□ -0.69
USP54-203ENST00000418501 DUSP27Q5VZP5 1158 aa10.76□□□□□ -0.69
USP54-203ENST00000418501 CDCA7LQ96GN5 454 aa10.76□□□□□ -0.69
USP54-203ENST00000418501 EMILIN1Q9Y6C2 1016 aa10.76□□□□□ -0.69
USP54-203ENST00000418501 KIF16BQ96L93 1317 aa10.76□□□□□ -0.69
USP54-203ENST00000418501 ANKRD26Q9UPS8 1709 aa10.76□□□□□ -0.69
USP54-203ENST00000418501 ZBTB7CA1YPR0 619 aa10.75□□□□□ -0.69
USP54-203ENST00000418501 DCCP43146 1447 aa10.75□□□□□ -0.69
USP54-203ENST00000418501 RRS1Q15050 365 aaKnown RBP10.75□□□□□ -0.69
USP54-203ENST00000418501 LAS1LQ9Y4W2 734 aaKnown RBP10.75□□□□□ -0.69
USP54-203ENST00000418501 XRN1Q8IZH2 1706 aaKnown RBP10.75□□□□□ -0.69
USP54-203ENST00000418501 HTATSF1O43719 755 aaKnown RBP10.75□□□□□ -0.69
USP54-203ENST00000418501 IFT57Q9NWB7 429 aa10.75□□□□□ -0.69
USP54-203ENST00000418501 ARHGEF10O15013 1369 aa10.74□□□□□ -0.69
USP54-203ENST00000418501 ZNF521Q96K83 1311 aa10.74□□□□□ -0.69
USP54-203ENST00000418501 SENP3-EIF4A1A0A087X0R7 540 aa10.74□□□□□ -0.69
USP54-203ENST00000418501 IL13P35225 146 aa10.74□□□□□ -0.69
USP54-203ENST00000418501 ZBTB47Q9UFB7 747 aaPredicted RBP10.74□□□□□ -0.69
USP54-203ENST00000418501 ZKSCAN2Q63HK3 967 aa10.74□□□□□ -0.69
USP54-203ENST00000418501 KRT28Q7Z3Y7 464 aa10.74□□□□□ -0.69
USP54-203ENST00000418501 HMOX1P09601 288 aa10.74□□□□□ -0.69
USP54-203ENST00000418501 SULT6B1Q6IMI4 303 aa10.73□□□□□ -0.69
USP54-203ENST00000418501 SMC4Q9NTJ3 1288 aa10.73□□□□□ -0.69
USP54-203ENST00000418501 RSPH6AQ9H0K4 717 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms