RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ATP7BP35670 1465 aa9.02□□□□□ -0.97
USP54-202ENST00000413442 LRP6O75581 1613 aa9.02□□□□□ -0.97
USP54-202ENST00000413442 USP21Q9UK80 565 aa9.01□□□□□ -0.97
USP54-202ENST00000413442 NINLQ9Y2I6 1382 aa9□□□□□ -0.97
USP54-202ENST00000413442 ADAMTS2O95450 1211 aa9□□□□□ -0.97
USP54-202ENST00000413442 TOPAZ1Q8N9V7 1692 aa9□□□□□ -0.97
USP54-202ENST00000413442 ALS2Q96Q42 1657 aa9□□□□□ -0.97
USP54-202ENST00000413442 TTC21AQ8NDW8 1320 aa9□□□□□ -0.97
USP54-202ENST00000413442 TRPM3Q9HCF6 1732 aaPredicted RBP9□□□□□ -0.97
USP54-202ENST00000413442 PPIP5K1Q6PFW1 1433 aa8.99□□□□□ -0.97
USP54-202ENST00000413442 PAK3O75914 559 aaPredicted RBP8.99□□□□□ -0.97
USP54-202ENST00000413442 XPCQ01831 940 aaPredicted RBP8.99□□□□□ -0.97
USP54-202ENST00000413442 LMOD2Q6P5Q4 547 aa8.99□□□□□ -0.97
USP54-202ENST00000413442 UNC5CLQ8IV45 518 aa8.99□□□□□ -0.97
USP54-202ENST00000413442 TERF2IPQ9NYB0 399 aa8.99□□□□□ -0.97
USP54-202ENST00000413442 CABP1Q9NZU7 370 aa8.99□□□□□ -0.97
USP54-202ENST00000413442 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.99□□□□□ -0.97
USP54-202ENST00000413442 NWD2Q9ULI1 1742 aa8.99□□□□□ -0.97
USP54-202ENST00000413442 ADRA2BP18089 450 aa8.98□□□□□ -0.97
USP54-202ENST00000413442 CCDC125Q86Z20 511 aa8.98□□□□□ -0.97
USP54-202ENST00000413442 ABTB2Q8N961 1025 aa8.98□□□□□ -0.97
USP54-202ENST00000413442 KCNH5Q8NCM2 988 aa8.98□□□□□ -0.97
USP54-202ENST00000413442 CCER1Q8TC90 406 aaPredicted RBP8.98□□□□□ -0.97
USP54-202ENST00000413442 GJD4Q96KN9 370 aaPredicted RBP8.98□□□□□ -0.97
USP54-202ENST00000413442 CABP2Q9NPB3 220 aa8.98□□□□□ -0.97
USP54-202ENST00000413442 SLIT2O94813 1529 aa8.97□□□□□ -0.97
USP54-202ENST00000413442 ONECUT3O60422 494 aaPredicted RBP8.97□□□□□ -0.97
USP54-202ENST00000413442 TMF1P82094 1093 aa8.97□□□□□ -0.97
USP54-202ENST00000413442 VPS72Q15906 364 aa8.97□□□□□ -0.97
USP54-202ENST00000413442 HDGFL2Q7Z4V5 671 aaPredicted RBP8.97□□□□□ -0.97
USP54-202ENST00000413442 BCL9LQ86UU0 1499 aa8.96□□□□□ -0.97
USP54-202ENST00000413442 FAM83GA6ND36 823 aa8.96□□□□□ -0.98
USP54-202ENST00000413442 CPDO75976 1380 aa8.96□□□□□ -0.98
USP54-202ENST00000413442 COL14A1Q05707 1796 aaKnown RBP8.96□□□□□ -0.98
USP54-202ENST00000413442 ATRNO75882 1429 aa8.96□□□□□ -0.98
USP54-202ENST00000413442 USP6P35125 1406 aa8.96□□□□□ -0.98
USP54-202ENST00000413442 CPSF1Q10570 1443 aaKnown RBP8.96□□□□□ -0.98
USP54-202ENST00000413442 ST20-MTHFSA0A0A6YYL1 179 aa8.95□□□□□ -0.98
USP54-202ENST00000413442 C11orf95C9JLR9 678 aaPredicted RBP8.95□□□□□ -0.98
USP54-202ENST00000413442 GCP02774 474 aa8.94□□□□□ -0.98
USP54-202ENST00000413442 NLRP6P59044 892 aa8.94□□□□□ -0.98
USP54-202ENST00000413442 TESK2Q96S53 571 aa8.94□□□□□ -0.98
USP54-202ENST00000413442 USP19O94966 1318 aa8.94□□□□□ -0.98
USP54-202ENST00000413442 SSH2Q76I76 1423 aa8.94□□□□□ -0.98
USP54-202ENST00000413442 AKAP12Q02952 1782 aa8.94□□□□□ -0.98
USP54-202ENST00000413442 CABLES1Q8TDN4 633 aa8.93□□□□□ -0.98
USP54-202ENST00000413442 PRDM11Q9NQV5 511 aa8.93□□□□□ -0.98
USP54-202ENST00000413442 THRAP3Q9Y2W1 955 aaKnown RBP8.93□□□□□ -0.98
USP54-202ENST00000413442 TTC21BQ7Z4L5 1316 aa8.93□□□□□ -0.98
USP54-202ENST00000413442 KTN1Q86UP2 1357 aaKnown RBP8.93□□□□□ -0.98
USP54-202ENST00000413442 ABCA3Q99758 1704 aa8.93□□□□□ -0.98
USP54-202ENST00000413442 CRYBG1Q9Y4K1 1723 aa8.92□□□□□ -0.98
USP54-202ENST00000413442 USP31Q70CQ4 1352 aa8.92□□□□□ -0.98
USP54-202ENST00000413442 EVA1CP58658 441 aa8.92□□□□□ -0.98
USP54-202ENST00000413442 EIF4G2P78344 907 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP54-202ENST00000413442 BTG4Q9NY30 223 aa8.92□□□□□ -0.98
USP54-202ENST00000413442 EDC4Q6P2E9 1401 aaKnown RBP8.91□□□□□ -0.98
USP54-202ENST00000413442 AATKQ6ZMQ8 1374 aa8.91□□□□□ -0.98
USP54-202ENST00000413442 USP47Q96K76 1375 aa8.91□□□□□ -0.98
USP54-202ENST00000413442 TMC1Q8TDI8 760 aa8.91□□□□□ -0.98
USP54-202ENST00000413442 BARGINQ6ZT62 677 aa8.9□□□□□ -0.98
USP54-202ENST00000413442 CDCA7Q9BWT1 371 aaPredicted RBP8.9□□□□□ -0.98
USP54-202ENST00000413442 SLC12A5Q9H2X9 1139 aa8.9□□□□□ -0.98
USP54-202ENST00000413442 MON2Q7Z3U7 1717 aa8.9□□□□□ -0.98
USP54-202ENST00000413442 PLCH1Q4KWH8 1693 aa8.9□□□□□ -0.98
USP54-202ENST00000413442 PHRF1Q9P1Y6 1649 aaKnown RBP8.9□□□□□ -0.99
USP54-202ENST00000413442 KIAA0232Q92628 1395 aa8.89□□□□□ -0.99
USP54-202ENST00000413442 SPATA31A5Q5VU36 1347 aa8.89□□□□□ -0.99
USP54-202ENST00000413442 SPATA31A7Q8IWB4 1347 aa8.89□□□□□ -0.99
USP54-202ENST00000413442 UPF1Q92900 1129 aaKnown RBP eCLIP8.89□□□□□ -0.99
USP54-202ENST00000413442 CCDC9Q9Y3X0 531 aaKnown RBP8.89□□□□□ -0.99
USP54-202ENST00000413442 SLIT3O75094 1523 aa8.89□□□□□ -0.99
USP54-202ENST00000413442 ABCC6O95255 1503 aa8.89□□□□□ -0.99
USP54-202ENST00000413442 ANKRD36BQ8N2N9 1353 aa8.88□□□□□ -0.99
USP54-202ENST00000413442 USP54Q70EL1 1684 aa8.88□□□□□ -0.99
USP54-202ENST00000413442 ZC3H6P61129 1189 aaKnown RBP8.88□□□□□ -0.99
USP54-202ENST00000413442 ARHGEF25Q86VW2 580 aa8.88□□□□□ -0.99
USP54-202ENST00000413442 SPATA31A1Q5TZJ5 1347 aa8.87□□□□□ -0.99
USP54-202ENST00000413442 SEPT12Q8IYM1 358 aa8.87□□□□□ -0.99
USP54-202ENST00000413442 RGS12O14924 1447 aa8.87□□□□□ -0.99
USP54-202ENST00000413442 NRAPQ86VF7 1730 aa8.86□□□□□ -0.99
USP54-202ENST00000413442 CD163L1Q9NR16 1453 aa8.86□□□□□ -0.99
USP54-202ENST00000413442 NUTM2GQ5VZR2 741 aa8.86□□□□□ -0.99
USP54-202ENST00000413442 KRT27Q7Z3Y8 459 aa8.86□□□□□ -0.99
USP54-202ENST00000413442 TCP11L2Q8N4U5 519 aa8.86□□□□□ -0.99
USP54-202ENST00000413442 COG3Q96JB2 828 aa8.86□□□□□ -0.99
USP54-202ENST00000413442 GLI3P10071 1580 aa8.86□□□□□ -0.99
USP54-202ENST00000413442 NRKQ7Z2Y5 1582 aa8.86□□□□□ -0.99
USP54-202ENST00000413442 PIK3C2AO00443 1686 aa8.85□□□□□ -0.99
USP54-202ENST00000413442 LMO7Q8WWI1 1683 aa8.85□□□□□ -0.99
USP54-202ENST00000413442 SF3B2Q13435 895 aaKnown RBP8.85□□□□□ -0.99
USP54-202ENST00000413442 CRB1P82279 1406 aa8.85□□□□□ -0.99
USP54-202ENST00000413442 A0A1W2PP64 1363 aa8.85□□□□□ -0.99
USP54-202ENST00000413442 KIF24Q5T7B8 1368 aa8.85□□□□□ -0.99
USP54-202ENST00000413442 CAMTA1Q9Y6Y1 1673 aa8.85□□□□□ -0.99
USP54-202ENST00000413442 WDR17Q8IZU2 1322 aa8.84□□□□□ -0.99
USP54-202ENST00000413442 CHRNA2Q15822 529 aa8.84□□□□□ -0.99
USP54-202ENST00000413442 FAM196AQ6ZSG2 479 aa8.84□□□□□ -0.99
USP54-202ENST00000413442 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP54-202ENST00000413442 CARD10Q9BWT7 1032 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms