RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 UPF2Q9HAU5 1272 aaKnown RBP17.03■□□□□ 0.32
VPS54-203ENST00000409558 POLKQ9UBT6 870 aa17.03■□□□□ 0.32
VPS54-203ENST00000409558 MVPQ14764 893 aaKnown RBP17.02■□□□□ 0.32
VPS54-203ENST00000409558 FOXD4L1Q9NU39 408 aa17.02■□□□□ 0.32
VPS54-203ENST00000409558 MYOM1P52179 1685 aa17.02■□□□□ 0.32
VPS54-203ENST00000409558 FRMPD1Q5SYB0 1578 aa17.02■□□□□ 0.32
VPS54-203ENST00000409558 NECTIN2Q92692 538 aa17.02■□□□□ 0.31
VPS54-203ENST00000409558 LTV1Q96GA3 475 aaPredicted RBP17.02■□□□□ 0.31
VPS54-203ENST00000409558 AEBP1Q8IUX7 1158 aa17.01■□□□□ 0.31
VPS54-203ENST00000409558 ARAP3Q8WWN8 1544 aa17■□□□□ 0.31
VPS54-203ENST00000409558 TSPOAP1O95153 1857 aa17■□□□□ 0.31
VPS54-203ENST00000409558 MLH3Q9UHC1 1453 aa17■□□□□ 0.31
VPS54-203ENST00000409558 NUDT16Q96DE0 195 aaKnown RBP17■□□□□ 0.31
VPS54-203ENST00000409558 VWDEQ8N2E2 1590 aa17■□□□□ 0.31
VPS54-203ENST00000409558 DEPDC5O75140 1603 aa17■□□□□ 0.31
VPS54-203ENST00000409558 COG3Q96JB2 828 aa17■□□□□ 0.31
VPS54-203ENST00000409558 YTHDC2Q9H6S0 1430 aaKnown RBP17■□□□□ 0.31
VPS54-203ENST00000409558 ATF7IPQ6VMQ6 1270 aa16.99■□□□□ 0.31
VPS54-203ENST00000409558 ADGRB3O60242 1522 aa16.99■□□□□ 0.31
VPS54-203ENST00000409558 ANKRD45Q5TZF3 282 aa16.98■□□□□ 0.31
VPS54-203ENST00000409558 GZF1Q9H116 711 aaPredicted RBP16.98■□□□□ 0.31
VPS54-203ENST00000409558 HECW2Q9P2P5 1572 aa16.98■□□□□ 0.31
VPS54-203ENST00000409558 TULP4Q9NRJ4 1543 aa16.97■□□□□ 0.31
VPS54-203ENST00000409558 MCM10Q7L590 875 aa16.97■□□□□ 0.31
VPS54-203ENST00000409558 PLEKHF1Q96S99 279 aa16.97■□□□□ 0.31
VPS54-203ENST00000409558 ATAD2Q6PL18 1390 aa16.97■□□□□ 0.31
VPS54-203ENST00000409558 SBNO2Q9Y2G9 1366 aa16.97■□□□□ 0.31
VPS54-203ENST00000409558 SULT6B1Q6IMI4 303 aa16.97■□□□□ 0.31
VPS54-203ENST00000409558 ZNF428Q96B54 188 aa16.96■□□□□ 0.31
VPS54-203ENST00000409558 ADGRB1O14514 1584 aa16.95■□□□□ 0.3
VPS54-203ENST00000409558 QRICH2Q9H0J4 1663 aa16.95■□□□□ 0.3
VPS54-203ENST00000409558 WASLO00401 505 aaPredicted RBP16.95■□□□□ 0.3
VPS54-203ENST00000409558 BRPF3Q9ULD4 1205 aa16.95■□□□□ 0.3
VPS54-203ENST00000409558 GLI2P10070 1586 aa16.94■□□□□ 0.3
VPS54-203ENST00000409558 SLC4A10Q6U841 1118 aa16.94■□□□□ 0.3
VPS54-203ENST00000409558 METP08581 1390 aa16.93■□□□□ 0.3
VPS54-203ENST00000409558 TRHP20396 242 aaPredicted RBP16.93■□□□□ 0.3
VPS54-203ENST00000409558 NGEFQ8N5V2 710 aa16.93■□□□□ 0.3
VPS54-203ENST00000409558 HSP90AB2PQ58FF8 381 aa16.92■□□□□ 0.3
VPS54-203ENST00000409558 C8orf58Q8NAV2 365 aa16.92■□□□□ 0.3
VPS54-203ENST00000409558 DDX19BQ9UMR2 479 aa16.92■□□□□ 0.3
VPS54-203ENST00000409558 ABCC11Q96J66 1382 aa16.92■□□□□ 0.3
VPS54-203ENST00000409558 LMOD2Q6P5Q4 547 aa16.92■□□□□ 0.3
VPS54-203ENST00000409558 NGDNQ8NEJ9 315 aaKnown RBP16.91■□□□□ 0.3
VPS54-203ENST00000409558 MBIPQ9NS73 344 aa16.91■□□□□ 0.3
VPS54-203ENST00000409558 RSPH6AQ9H0K4 717 aa16.91■□□□□ 0.3
VPS54-203ENST00000409558 IPO8O15397 1037 aaKnown RBP16.91■□□□□ 0.3
VPS54-203ENST00000409558 FOXO3O43524 673 aa16.91■□□□□ 0.3
VPS54-203ENST00000409558 BECN1Q14457 450 aa16.91■□□□□ 0.3
VPS54-203ENST00000409558 TWISTNBQ3B726 338 aaPredicted RBP16.91■□□□□ 0.3
VPS54-203ENST00000409558 CCDC61Q9Y6R9 512 aa16.91■□□□□ 0.3
VPS54-203ENST00000409558 NRXN1Q9ULB1 1477 aa16.9■□□□□ 0.3
VPS54-203ENST00000409558 SIGLEC1Q9BZZ2 1709 aa16.9■□□□□ 0.3
VPS54-203ENST00000409558 FCHSD2O94868 740 aa16.9■□□□□ 0.3
VPS54-203ENST00000409558 RIMS2Q9UQ26 1411 aa16.89■□□□□ 0.3
VPS54-203ENST00000409558 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.29
VPS54-203ENST00000409558 CAMSAP1Q5T5Y3 1602 aa16.89■□□□□ 0.29
VPS54-203ENST00000409558 USP19O94966 1318 aa16.89■□□□□ 0.29
VPS54-203ENST00000409558 HSP90AA1P07900 732 aaKnown RBP16.89■□□□□ 0.29
VPS54-203ENST00000409558 NFE2L2Q16236 605 aa16.89■□□□□ 0.29
VPS54-203ENST00000409558 CCDC27Q2M243 656 aa16.88■□□□□ 0.29
VPS54-203ENST00000409558 PPIP5K1Q6PFW1 1433 aa16.88■□□□□ 0.29
VPS54-203ENST00000409558 NEXMIFQ5QGS0 1516 aa16.88■□□□□ 0.29
VPS54-203ENST00000409558 DIP2CQ9Y2E4 1556 aa16.87■□□□□ 0.29
VPS54-203ENST00000409558 PNNQ9H307 717 aaKnown RBP16.87■□□□□ 0.29
VPS54-203ENST00000409558 GSE1Q14687 1217 aa16.87■□□□□ 0.29
VPS54-203ENST00000409558 C22orf23Q9BZE7 217 aa16.86■□□□□ 0.29
VPS54-203ENST00000409558 LTKP29376 864 aa16.86■□□□□ 0.29
VPS54-203ENST00000409558 NEO1Q92859 1461 aa16.86■□□□□ 0.29
VPS54-203ENST00000409558 TBC1D2Q9BYX2 928 aa16.86■□□□□ 0.29
VPS54-203ENST00000409558 LMTK2Q8IWU2 1503 aa16.86■□□□□ 0.29
VPS54-203ENST00000409558 AMPHP49418 695 aa16.85■□□□□ 0.29
VPS54-203ENST00000409558 ACEP12821 1306 aa16.85■□□□□ 0.29
VPS54-203ENST00000409558 F6X3S4 739 aa16.84■□□□□ 0.29
VPS54-203ENST00000409558 VAMP4O75379 141 aa16.84■□□□□ 0.29
VPS54-203ENST00000409558 USHBP1Q8N6Y0 703 aa16.84■□□□□ 0.29
VPS54-203ENST00000409558 ZMYM3Q14202 1370 aa16.84■□□□□ 0.29
VPS54-203ENST00000409558 PRR36Q9H6K5 1346 aa16.84■□□□□ 0.29
VPS54-203ENST00000409558 PPLO60437 1756 aa16.84■□□□□ 0.29
VPS54-203ENST00000409558 PIK3C2BO00750 1634 aa16.83■□□□□ 0.29
VPS54-203ENST00000409558 KIF16BQ96L93 1317 aa16.83■□□□□ 0.29
VPS54-203ENST00000409558 SMARCA5O60264 1052 aaPredicted RBP16.83■□□□□ 0.29
VPS54-203ENST00000409558 IL13P35225 146 aa16.83■□□□□ 0.29
VPS54-203ENST00000409558 C16orf71Q8IYS4 520 aaPredicted RBP16.83■□□□□ 0.29
VPS54-203ENST00000409558 NSD2O96028 1365 aa16.83■□□□□ 0.28
VPS54-203ENST00000409558 XPCQ01831 940 aaPredicted RBP16.83■□□□□ 0.28
VPS54-203ENST00000409558 MYO5BQ9ULV0 1848 aa16.82■□□□□ 0.28
VPS54-203ENST00000409558 GNAI1P63096 354 aa16.82■□□□□ 0.28
VPS54-203ENST00000409558 ZBTB40Q9NUA8 1239 aa16.82■□□□□ 0.28
VPS54-203ENST00000409558 PTPRMP28827 1452 aa16.82■□□□□ 0.28
VPS54-203ENST00000409558 EIF4A2Q14240 407 aaKnown RBP16.82■□□□□ 0.28
VPS54-203ENST00000409558 TPRNQ4KMQ1 711 aa16.81■□□□□ 0.28
VPS54-203ENST00000409558 RBM42Q9BTD8 480 aaKnown RBP16.81■□□□□ 0.28
VPS54-203ENST00000409558 NLRP6P59044 892 aa16.81■□□□□ 0.28
VPS54-203ENST00000409558 KIAA1210Q9ULL0 1709 aa16.8■□□□□ 0.28
VPS54-203ENST00000409558 CHD1LQ86WJ1 897 aa16.8■□□□□ 0.28
VPS54-203ENST00000409558 AMOTL2Q9Y2J4 779 aa16.8■□□□□ 0.28
VPS54-203ENST00000409558 TSHZ3Q63HK5 1081 aa16.8■□□□□ 0.28
VPS54-203ENST00000409558 SETBP1Q9Y6X0 1596 aa16.8■□□□□ 0.28
VPS54-203ENST00000409558 HDGFP51858 240 aaKnown RBP16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms