RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 RRP7AQ9Y3A4 280 aaKnown RBP27.14■■□□□ 1.93
USP39-203ENST00000409470 IQSEC2Q5JU85 1478 aa27.14■■□□□ 1.93
USP39-203ENST00000409470 COL3A1P02461 1466 aaPredicted RBP27.13■■□□□ 1.93
USP39-203ENST00000409470 DIP2AQ14689 1571 aa27.13■■□□□ 1.93
USP39-203ENST00000409470 PLIN1O60240 522 aa27.12■■□□□ 1.93
USP39-203ENST00000409470 EXOC6Q8TAG9 804 aa27.12■■□□□ 1.93
USP39-203ENST00000409470 ZNF692Q9BU19 519 aaPredicted RBP27.11■■□□□ 1.93
USP39-203ENST00000409470 NME9Q86XW9 330 aa27.11■■□□□ 1.93
USP39-203ENST00000409470 DMRT2Q9Y5R5 561 aa27.11■■□□□ 1.93
USP39-203ENST00000409470 NKTRP30414 1462 aaKnown RBP27.1■■□□□ 1.93
USP39-203ENST00000409470 ITSN1Q15811 1721 aa27.1■■□□□ 1.93
USP39-203ENST00000409470 MON2Q7Z3U7 1717 aa27.09■■□□□ 1.93
USP39-203ENST00000409470 DIAPH1O60610 1272 aaKnown RBP27.09■■□□□ 1.93
USP39-203ENST00000409470 DNAJC5Q9H3Z4 198 aa27.09■■□□□ 1.93
USP39-203ENST00000409470 AKAP12Q02952 1782 aa27.08■■□□□ 1.93
USP39-203ENST00000409470 PTCH1Q13635 1447 aa27.08■■□□□ 1.93
USP39-203ENST00000409470 NUTM2FA1L443 756 aa27.07■■□□□ 1.92
USP39-203ENST00000409470 PPM1GO15355 546 aaPredicted RBP27.07■■□□□ 1.92
USP39-203ENST00000409470 PNPLA6Q8IY17 1366 aa27.07■■□□□ 1.92
USP39-203ENST00000409470 POLKQ9UBT6 870 aa27.06■■□□□ 1.92
USP39-203ENST00000409470 COG3Q96JB2 828 aa27.06■■□□□ 1.92
USP39-203ENST00000409470 FBLN1P23142 703 aa27.05■■□□□ 1.92
USP39-203ENST00000409470 CCDC27Q2M243 656 aa27.05■■□□□ 1.92
USP39-203ENST00000409470 PHF23Q9BUL5 403 aaPredicted RBP27.05■■□□□ 1.92
USP39-203ENST00000409470 ZRANB1Q9UGI0 708 aa27.04■■□□□ 1.92
USP39-203ENST00000409470 NCBP3Q53F19 620 aaKnown RBP27.04■■□□□ 1.92
USP39-203ENST00000409470 WDR63Q8IWG1 891 aa27.04■■□□□ 1.92
USP39-203ENST00000409470 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.04■■□□□ 1.92
USP39-203ENST00000409470 ADAMTSL3P82987 1691 aa27.04■■□□□ 1.92
USP39-203ENST00000409470 TOPAZ1Q8N9V7 1692 aa27.03■■□□□ 1.92
USP39-203ENST00000409470 ACEP12821 1306 aa27.02■■□□□ 1.92
USP39-203ENST00000409470 MAPK8IP3Q9UPT6 1336 aa27.02■■□□□ 1.92
USP39-203ENST00000409470 PLEKHG3A1L390 1219 aa27.02■■□□□ 1.92
USP39-203ENST00000409470 MAP2P11137 1827 aaKnown RBP27.01■■□□□ 1.91
USP39-203ENST00000409470 PLEKHF1Q96S99 279 aa27.01■■□□□ 1.91
USP39-203ENST00000409470 ANKLE2Q86XL3 938 aa27■■□□□ 1.91
USP39-203ENST00000409470 CRBNQ96SW2 442 aa27■■□□□ 1.91
USP39-203ENST00000409470 PNNQ9H307 717 aaKnown RBP27■■□□□ 1.91
USP39-203ENST00000409470 XRN1Q8IZH2 1706 aaKnown RBP26.99■■□□□ 1.91
USP39-203ENST00000409470 EMILIN1Q9Y6C2 1016 aa26.99■■□□□ 1.91
USP39-203ENST00000409470 AATKQ6ZMQ8 1374 aa26.99■■□□□ 1.91
USP39-203ENST00000409470 PIK3R4Q99570 1358 aa26.99■■□□□ 1.91
USP39-203ENST00000409470 ZNF142P52746 1687 aaPredicted RBP26.97■■□□□ 1.91
USP39-203ENST00000409470 TTC21BQ7Z4L5 1316 aa26.97■■□□□ 1.91
USP39-203ENST00000409470 KCNA6P17658 529 aa26.97■■□□□ 1.91
USP39-203ENST00000409470 C20orf194Q5TEA3 1177 aa26.97■■□□□ 1.91
USP39-203ENST00000409470 TMPOP42166 694 aaKnown RBP26.95■■□□□ 1.91
USP39-203ENST00000409470 USP6P35125 1406 aa26.95■■□□□ 1.9
USP39-203ENST00000409470 FCHSD2O94868 740 aa26.94■■□□□ 1.9
USP39-203ENST00000409470 CDK12Q9NYV4 1490 aaPredicted RBP26.94■■□□□ 1.9
USP39-203ENST00000409470 NRKQ7Z2Y5 1582 aa26.93■■□□□ 1.9
USP39-203ENST00000409470 MYH16Q9H6N6 1097 aa26.93■■□□□ 1.9
USP39-203ENST00000409470 SETD1BQ9UPS6 1966 aaKnown RBP26.92■■□□□ 1.9
USP39-203ENST00000409470 BCAR3O75815 825 aa26.92■■□□□ 1.9
USP39-203ENST00000409470 RRS1Q15050 365 aaKnown RBP26.92■■□□□ 1.9
USP39-203ENST00000409470 RBM19Q9Y4C8 960 aaKnown RBP26.92■■□□□ 1.9
USP39-203ENST00000409470 PMFBP1Q8TBY8 1022 aa26.92■■□□□ 1.9
USP39-203ENST00000409470 NEFMP07197 916 aa26.9■■□□□ 1.9
USP39-203ENST00000409470 NGDNQ8NEJ9 315 aaKnown RBP26.89■■□□□ 1.9
USP39-203ENST00000409470 PRKAR2BP31323 418 aa26.89■■□□□ 1.89
USP39-203ENST00000409470 IL13P35225 146 aa26.89■■□□□ 1.89
USP39-203ENST00000409470 RIPK4P57078 832 aa26.89■■□□□ 1.89
USP39-203ENST00000409470 RSPH6AQ9H0K4 717 aa26.89■■□□□ 1.89
USP39-203ENST00000409470 LRRC7Q96NW7 1537 aa26.88■■□□□ 1.89
USP39-203ENST00000409470 TRIM35Q9UPQ4 493 aa26.88■■□□□ 1.89
USP39-203ENST00000409470 OVOS2A0A0J9YW53 1432 aa26.86■■□□□ 1.89
USP39-203ENST00000409470 OVOS2Q6IE36 1432 aa26.86■■□□□ 1.89
USP39-203ENST00000409470 RGPD8O14715 1765 aaPredicted RBP26.86■■□□□ 1.89
USP39-203ENST00000409470 HMOX1P09601 288 aa26.86■■□□□ 1.89
USP39-203ENST00000409470 TTC21AQ8NDW8 1320 aa26.85■■□□□ 1.89
USP39-203ENST00000409470 SSH2Q76I76 1423 aa26.84■■□□□ 1.89
USP39-203ENST00000409470 ANKARQ7Z5J8 1434 aa26.84■■□□□ 1.89
USP39-203ENST00000409470 CHD2O14647 1828 aaKnown RBP26.84■■□□□ 1.89
USP39-203ENST00000409470 CANXP27824 592 aaKnown RBP26.83■■□□□ 1.89
USP39-203ENST00000409470 RARSP54136 660 aaKnown RBP26.82■■□□□ 1.88
USP39-203ENST00000409470 IL16Q14005 1332 aa26.8■■□□□ 1.88
USP39-203ENST00000409470 FMN2Q9NZ56 1722 aa26.8■■□□□ 1.88
USP39-203ENST00000409470 FANCIQ9NVI1 1328 aa26.8■■□□□ 1.88
USP39-203ENST00000409470 TSR2Q969E8 191 aaKnown RBP26.8■■□□□ 1.88
USP39-203ENST00000409470 NALCNQ8IZF0 1738 aa26.78■■□□□ 1.88
USP39-203ENST00000409470 NPHP4O75161 1426 aaPredicted RBP26.78■■□□□ 1.88
USP39-203ENST00000409470 USP31Q70CQ4 1352 aa26.78■■□□□ 1.88
USP39-203ENST00000409470 PHACTR3Q96KR7 559 aa26.78■■□□□ 1.88
USP39-203ENST00000409470 SOX12O15370 315 aa26.77■■□□□ 1.88
USP39-203ENST00000409470 PDE3AQ14432 1141 aa26.77■■□□□ 1.88
USP39-203ENST00000409470 NFE2L2Q16236 605 aa26.77■■□□□ 1.88
USP39-203ENST00000409470 FRAT1Q92837 279 aaPredicted RBP26.77■■□□□ 1.88
USP39-203ENST00000409470 CT47B1P0C2W7 299 aaPredicted RBP26.75■■□□□ 1.87
USP39-203ENST00000409470 RBM33Q96EV2 1170 aaKnown RBP26.75■■□□□ 1.87
USP39-203ENST00000409470 EIF4A2Q14240 407 aaKnown RBP26.74■■□□□ 1.87
USP39-203ENST00000409470 EXOSC9Q06265 439 aaKnown RBP26.73■■□□□ 1.87
USP39-203ENST00000409470 BCL2L13Q9BXK5 485 aa26.73■■□□□ 1.87
USP39-203ENST00000409470 HSP90AB2PQ58FF8 381 aa26.7■■□□□ 1.86
USP39-203ENST00000409470 PANK1Q8TE04 598 aa26.7■■□□□ 1.86
USP39-203ENST00000409470 PIK3C2AO00443 1686 aa26.7■■□□□ 1.86
USP39-203ENST00000409470 PEAK1Q9H792 1746 aa26.69■■□□□ 1.86
USP39-203ENST00000409470 NLRP6P59044 892 aa26.69■■□□□ 1.86
USP39-203ENST00000409470 CALD1Q05682 793 aaKnown RBP26.69■■□□□ 1.86
USP39-203ENST00000409470 PHF8Q9UPP1 1060 aa26.68■■□□□ 1.86
USP39-203ENST00000409470 MAP3K19Q56UN5 1328 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms