RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MYOM1P52179 1685 aa18.31■□□□□ 0.52
LIMS1-204ENST00000409441 SOS2Q07890 1332 aaPredicted RBP18.31■□□□□ 0.52
LIMS1-204ENST00000409441 USP6P35125 1406 aa18.31■□□□□ 0.52
LIMS1-204ENST00000409441 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.31■□□□□ 0.52
LIMS1-204ENST00000409441 PER1O15534 1290 aaPredicted RBP18.3■□□□□ 0.52
LIMS1-204ENST00000409441 TTC21BQ7Z4L5 1316 aa18.29■□□□□ 0.52
LIMS1-204ENST00000409441 KNSTRNQ9Y448 316 aa18.29■□□□□ 0.52
LIMS1-204ENST00000409441 SSH2Q76I76 1423 aa18.28■□□□□ 0.52
LIMS1-204ENST00000409441 BRD4O60885 1362 aaPredicted RBP18.28■□□□□ 0.52
LIMS1-204ENST00000409441 FBXO41Q8TF61 875 aa18.27■□□□□ 0.52
LIMS1-204ENST00000409441 PXDNQ92626 1479 aa18.27■□□□□ 0.52
LIMS1-204ENST00000409441 EDC4Q6P2E9 1401 aaKnown RBP18.27■□□□□ 0.51
LIMS1-204ENST00000409441 NSD3Q9BZ95 1437 aa18.27■□□□□ 0.51
LIMS1-204ENST00000409441 LMOD2Q6P5Q4 547 aa18.27■□□□□ 0.51
LIMS1-204ENST00000409441 ABTB2Q8N961 1025 aa18.27■□□□□ 0.51
LIMS1-204ENST00000409441 LRRC59Q96AG4 307 aaKnown RBP18.27■□□□□ 0.51
LIMS1-204ENST00000409441 SBNO1A3KN83 1393 aa18.26■□□□□ 0.51
LIMS1-204ENST00000409441 TTC21AQ8NDW8 1320 aa18.26■□□□□ 0.51
LIMS1-204ENST00000409441 HSPA1LP34931 641 aa18.25■□□□□ 0.51
LIMS1-204ENST00000409441 AKAP12Q02952 1782 aa18.25■□□□□ 0.51
LIMS1-204ENST00000409441 SPATA31A3Q5VYP0 1347 aa18.25■□□□□ 0.51
LIMS1-204ENST00000409441 FYB1O15117 783 aa18.24■□□□□ 0.51
LIMS1-204ENST00000409441 MAPK8IP2Q13387 824 aaPredicted RBP18.24■□□□□ 0.51
LIMS1-204ENST00000409441 NME9Q86XW9 330 aa18.24■□□□□ 0.51
LIMS1-204ENST00000409441 CGNL1Q0VF96 1302 aa18.24■□□□□ 0.51
LIMS1-204ENST00000409441 AHDC1Q5TGY3 1603 aaPredicted RBP18.24■□□□□ 0.51
LIMS1-204ENST00000409441 NHSL1Q5SYE7 1610 aa18.23■□□□□ 0.51
LIMS1-204ENST00000409441 NUTM2GQ5VZR2 741 aa18.23■□□□□ 0.51
LIMS1-204ENST00000409441 AMER1Q5JTC6 1135 aaPredicted RBP18.23■□□□□ 0.51
LIMS1-204ENST00000409441 ZRANB1Q9UGI0 708 aa18.23■□□□□ 0.51
LIMS1-204ENST00000409441 NLRP6P59044 892 aa18.22■□□□□ 0.51
LIMS1-204ENST00000409441 MON2Q7Z3U7 1717 aa18.22■□□□□ 0.51
LIMS1-204ENST00000409441 GGNBP2Q9H3C7 697 aa18.21■□□□□ 0.51
LIMS1-204ENST00000409441 TNS3Q68CZ2 1445 aa18.2■□□□□ 0.5
LIMS1-204ENST00000409441 CNGB1Q14028 1251 aaPredicted RBP18.2■□□□□ 0.5
LIMS1-204ENST00000409441 PHLPP1O60346 1717 aa18.2■□□□□ 0.5
LIMS1-204ENST00000409441 PLEKHG5O94827 1062 aa18.2■□□□□ 0.5
LIMS1-204ENST00000409441 CC2D1BQ5T0F9 858 aaKnown RBP18.2■□□□□ 0.5
LIMS1-204ENST00000409441 NLRP13Q86W25 1043 aa18.2■□□□□ 0.5
LIMS1-204ENST00000409441 ARHGEF10O15013 1369 aa18.19■□□□□ 0.5
LIMS1-204ENST00000409441 COG3Q96JB2 828 aa18.19■□□□□ 0.5
LIMS1-204ENST00000409441 TRPM3Q9HCF6 1732 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-204ENST00000409441 USP31Q70CQ4 1352 aa18.17■□□□□ 0.5
LIMS1-204ENST00000409441 NRKQ7Z2Y5 1582 aa18.17■□□□□ 0.5
LIMS1-204ENST00000409441 COL16A1Q07092 1604 aaPredicted RBP18.17■□□□□ 0.5
LIMS1-204ENST00000409441 CABLES1Q8TDN4 633 aa18.16■□□□□ 0.5
LIMS1-204ENST00000409441 MORC1Q86VD1 984 aa18.16■□□□□ 0.5
LIMS1-204ENST00000409441 NPC1L1Q9UHC9 1359 aa18.15■□□□□ 0.5
LIMS1-204ENST00000409441 NSD2O96028 1365 aa18.15■□□□□ 0.5
LIMS1-204ENST00000409441 PNPLA6Q8IY17 1366 aa18.15■□□□□ 0.5
LIMS1-204ENST00000409441 JCADQ9P266 1359 aa18.14■□□□□ 0.49
LIMS1-204ENST00000409441 ALS2Q96Q42 1657 aa18.13■□□□□ 0.49
LIMS1-204ENST00000409441 PIK3C2AO00443 1686 aa18.13■□□□□ 0.49
LIMS1-204ENST00000409441 GCP02774 474 aa18.12■□□□□ 0.49
LIMS1-204ENST00000409441 SOX12O15370 315 aa18.12■□□□□ 0.49
LIMS1-204ENST00000409441 TNNT2P45379 298 aaPredicted RBP18.12■□□□□ 0.49
LIMS1-204ENST00000409441 KCNH5Q8NCM2 988 aa18.12■□□□□ 0.49
LIMS1-204ENST00000409441 USP19O94966 1318 aa18.11■□□□□ 0.49
LIMS1-204ENST00000409441 OVOS2A0A0J9YW53 1432 aa18.11■□□□□ 0.49
LIMS1-204ENST00000409441 OVOS2Q6IE36 1432 aa18.11■□□□□ 0.49
LIMS1-204ENST00000409441 FBLN1P23142 703 aa18.11■□□□□ 0.49
LIMS1-204ENST00000409441 HAP1P54257 671 aaPredicted RBP18.11■□□□□ 0.49
LIMS1-204ENST00000409441 PRKRIP1Q9H875 184 aaPredicted RBP18.11■□□□□ 0.49
LIMS1-204ENST00000409441 NUTM2BA6NNL0 878 aaPredicted RBP18.09■□□□□ 0.49
LIMS1-204ENST00000409441 NUTM2EB1AL46 878 aaPredicted RBP18.09■□□□□ 0.49
LIMS1-204ENST00000409441 NUTM2AQ8IVF1 878 aaPredicted RBP18.09■□□□□ 0.49
LIMS1-204ENST00000409441 ZC3H6P61129 1189 aaKnown RBP18.08■□□□□ 0.48
LIMS1-204ENST00000409441 RALBP1Q15311 655 aa18.08■□□□□ 0.48
LIMS1-204ENST00000409441 KIF20BQ96Q89 1820 aa18.07■□□□□ 0.48
LIMS1-204ENST00000409441 MED1Q15648 1581 aaPredicted RBP18.07■□□□□ 0.48
LIMS1-204ENST00000409441 SPATA31A6Q5VVP1 1343 aa18.07■□□□□ 0.48
LIMS1-204ENST00000409441 ILDR1Q86SU0 546 aaPredicted RBP18.05■□□□□ 0.48
LIMS1-204ENST00000409441 PARD3Q8TEW0 1356 aa18.05■□□□□ 0.48
LIMS1-204ENST00000409441 ADAMTS2O95450 1211 aa18.05■□□□□ 0.48
LIMS1-204ENST00000409441 RRS1Q15050 365 aaKnown RBP18.05■□□□□ 0.48
LIMS1-204ENST00000409441 COL22A1Q8NFW1 1626 aaPredicted RBP18.04■□□□□ 0.48
LIMS1-204ENST00000409441 SLIT3O75094 1523 aa18.04■□□□□ 0.48
LIMS1-204ENST00000409441 ZBTB7CA1YPR0 619 aa18.04■□□□□ 0.48
LIMS1-204ENST00000409441 ARHGEF25Q86VW2 580 aa18.04■□□□□ 0.48
LIMS1-204ENST00000409441 POLKQ9UBT6 870 aa18.04■□□□□ 0.48
LIMS1-204ENST00000409441 AATKQ6ZMQ8 1374 aa18.04■□□□□ 0.48
LIMS1-204ENST00000409441 SHPRHQ149N8 1683 aa18.03■□□□□ 0.48
LIMS1-204ENST00000409441 PPP2R1AP30153 589 aa18.03■□□□□ 0.48
LIMS1-204ENST00000409441 MARF1Q9Y4F3 1742 aaKnown RBP18.03■□□□□ 0.48
LIMS1-204ENST00000409441 USP54Q70EL1 1684 aa18.02■□□□□ 0.48
LIMS1-204ENST00000409441 FAM83GA6ND36 823 aa18.02■□□□□ 0.48
LIMS1-204ENST00000409441 PPM1GO15355 546 aaPredicted RBP18.02■□□□□ 0.48
LIMS1-204ENST00000409441 MAP3K19Q56UN5 1328 aa18.02■□□□□ 0.48
LIMS1-204ENST00000409441 MTHFSP49914 203 aa18.01■□□□□ 0.47
LIMS1-204ENST00000409441 PRDM11Q9NQV5 511 aa18.01■□□□□ 0.47
LIMS1-204ENST00000409441 EMILIN1Q9Y6C2 1016 aa18.01■□□□□ 0.47
LIMS1-204ENST00000409441 KIAA0232Q92628 1395 aa18.01■□□□□ 0.47
LIMS1-204ENST00000409441 CPDO75976 1380 aa18.01■□□□□ 0.47
LIMS1-204ENST00000409441 AMPHP49418 695 aa18.01■□□□□ 0.47
LIMS1-204ENST00000409441 CACNB1Q02641 598 aaPredicted RBP18.01■□□□□ 0.47
LIMS1-204ENST00000409441 CHRNA2Q15822 529 aa18.01■□□□□ 0.47
LIMS1-204ENST00000409441 ANKRD26Q9UPS8 1709 aa18.01■□□□□ 0.47
LIMS1-204ENST00000409441 NFAT5O94916 1531 aa18■□□□□ 0.47
LIMS1-204ENST00000409441 MYBBP1AQ9BQG0 1328 aaKnown RBP17.98■□□□□ 0.47
LIMS1-204ENST00000409441 CRYBG1Q9Y4K1 1723 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms